Wall clock time and date at job start Tue Mar 31 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99634 * 2 1 4 4 H 1.48496 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47169 * 300.00329 * 3 2 1 6 6 H 1.48501 * 109.46912 * 60.00499 * 3 2 1 7 7 C 1.38810 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99900 * 195.19150 * 7 2 1 9 9 N 1.36941 * 119.99921 * 15.18401 * 7 2 1 10 10 C 1.47162 * 120.70586 * 25.34374 * 9 7 2 11 11 C 1.53888 * 108.07002 * 132.77907 * 10 9 7 12 12 H 1.09000 * 112.09643 * 181.88309 * 11 10 9 13 13 C 1.54543 * 107.83118 * 305.84459 * 11 10 9 14 14 C 1.54275 * 104.85315 * 89.07203 * 13 11 10 15 15 C 1.54550 * 104.84783 * 0.02562 * 14 13 11 16 16 H 1.09000 * 112.18448 * 146.41125 * 15 14 13 17 17 C 1.46191 * 120.06758 * 204.37183 * 9 7 2 18 18 N 1.48314 * 107.20665 * 58.33734 * 11 10 9 19 19 C 1.34767 * 128.07726 * 106.70313 * 18 11 10 20 20 O 1.21282 * 120.00472 * 0.02562 * 19 18 11 21 21 C 1.50702 * 119.99980 * 179.97438 * 19 18 11 22 22 H 1.09007 * 110.48969 * 38.75161 * 21 19 18 23 23 C 1.54106 * 110.54954 * 275.89639 * 21 19 18 24 24 N 1.47050 * 103.86240 * 241.40320 * 23 21 19 25 25 C 1.33956 * 109.18178 * 359.97438 * 24 23 21 26 26 O 1.21583 * 123.04135 * 180.02562 * 25 24 23 27 27 N 1.33942 * 113.91214 * 0.02562 * 25 24 23 28 28 H 0.97002 * 120.00556 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.75606 * 13.11511 * 10 9 7 30 30 H 1.09007 * 109.74687 * 252.43424 * 10 9 7 31 31 H 1.09000 * 110.35950 * 207.91745 * 13 11 10 32 32 H 1.09004 * 110.36044 * 330.11944 * 13 11 10 33 33 H 1.09004 * 110.36285 * 118.83747 * 14 13 11 34 34 H 1.08990 * 110.36791 * 241.04784 * 14 13 11 35 35 H 1.08998 * 109.24834 * 107.80511 * 17 9 7 36 36 H 1.08998 * 110.10500 * 347.22261 * 17 9 7 37 37 H 1.08997 * 110.54996 * 359.97438 * 23 21 19 38 38 H 1.09004 * 110.54339 * 122.81409 * 23 21 19 39 39 H 0.96998 * 125.41452 * 179.97438 * 24 23 21 40 40 H 0.97006 * 125.40938 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0620 -1.2184 0.2446 9 7 1.3615 -2.3672 -0.3117 10 6 0.1553 -2.3537 -1.1546 11 6 0.3115 -3.4443 -2.2290 12 1 -0.5363 -3.4697 -2.9137 13 6 1.6481 -3.1964 -2.9641 14 6 2.6976 -3.9839 -2.1527 15 6 1.8998 -4.6367 -1.0012 16 1 2.3028 -5.6100 -0.7214 17 6 1.8767 -3.6453 0.1764 18 7 0.4988 -4.7340 -1.5210 19 6 -0.3815 -5.7462 -1.3909 20 8 -1.4834 -5.6596 -1.8901 21 6 0.0038 -6.9861 -0.6259 22 1 0.5968 -6.7248 0.2507 23 6 0.7759 -7.9635 -1.5333 24 7 -0.0688 -9.1669 -1.5543 25 6 -1.1537 -8.9564 -0.7973 26 8 -2.0232 -9.7912 -0.6381 27 7 -1.1939 -7.7429 -0.2316 28 1 -0.4851 0.8400 0.0004 29 1 0.0499 -1.3792 -1.6314 30 1 -0.7233 -2.5615 -0.5437 31 1 1.5954 -3.5752 -3.9848 32 1 1.8879 -2.1331 -2.9667 33 1 3.1610 -4.7500 -2.7744 34 1 3.4556 -3.3084 -1.7563 35 1 1.2205 -4.0211 0.9613 36 1 2.8852 -3.5171 0.5697 37 1 0.8803 -7.5522 -2.5373 38 1 1.7535 -8.1897 -1.1075 39 1 0.1281 -9.9835 -2.0393 40 1 -1.9008 -7.4152 0.3462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017867846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:13 Heat of formation + Delta-G solvation = -4.231315 kcal Electronic energy + Delta-G solvation = -25007.879416 eV Core-core repulsion = 21438.262238 eV Total energy + Delta-G solvation = -3569.617177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36554 -39.94151 -37.89849 -36.16917 -34.24240 -33.10450 -31.54582 -31.32738 -30.45621 -28.99283 -26.33461 -24.30718 -23.82139 -22.86442 -21.86480 -20.85880 -20.23012 -18.58542 -17.89276 -17.67463 -16.39472 -16.34932 -15.80190 -15.33395 -15.10795 -14.76365 -14.57813 -14.11090 -14.01521 -13.53656 -13.42361 -13.09962 -13.00409 -12.85778 -12.34971 -12.22511 -12.03301 -11.59463 -11.22305 -10.95242 -10.67541 -10.58155 -10.44714 -10.37774 -10.08994 -10.03275 -9.92845 -9.79043 -9.49478 -8.90380 -8.64327 -8.38138 -6.83376 -5.90200 -3.33482 2.49929 2.79413 2.94097 3.23910 3.29238 3.37291 3.39045 3.87540 4.15136 4.36537 4.39437 4.72016 4.93006 5.03597 5.11619 5.19329 5.27360 5.29386 5.42849 5.47108 5.64797 5.69462 5.95126 6.03419 6.19131 6.27529 6.30913 6.46082 6.50479 6.62422 6.82828 6.85391 7.04060 7.18776 7.25467 7.48045 7.65207 7.89440 8.26591 8.33160 8.53515 9.06066 9.69455 10.22228 11.18007 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.004218 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.706728 B = 6636.946819 C = 6852.466159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.173 3.827 11 C 0.104 3.896 12 H 0.087 0.913 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.104 3.896 16 H 0.087 0.913 17 C 0.140 3.860 18 N -0.603 5.603 19 C 0.519 3.481 20 O -0.537 6.537 21 C 0.107 3.893 22 H 0.114 0.886 23 C 0.108 3.892 24 N -0.740 5.740 25 C 0.707 3.293 26 O -0.589 6.589 27 N -0.713 5.713 28 H 0.255 0.745 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.431 0.569 40 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -11.909 -3.774 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.047 3.953 11 C 0.000 4.000 12 H 0.105 0.895 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.001 4.001 16 H 0.105 0.895 17 C 0.012 3.988 18 N -0.337 5.337 19 C 0.304 3.696 20 O -0.414 6.414 21 C -0.004 4.004 22 H 0.132 0.868 23 C -0.018 4.018 24 N -0.403 5.403 25 C 0.406 3.594 26 O -0.467 6.467 27 N -0.374 5.374 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.272 0.728 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 6.375 -12.195 -3.911 14.306 hybrid contribution 0.281 0.944 0.110 0.991 sum 6.657 -11.251 -3.802 13.615 Atomic orbital electron populations 1.70013 1.05244 1.25606 1.53894 1.25011 0.95292 0.98380 1.00756 0.86224 0.79218 0.83949 0.77360 1.20252 1.21538 1.21743 1.19222 0.92165 0.84310 1.42870 0.91208 1.43798 1.29811 1.01025 1.56301 1.21325 0.88317 0.96024 0.89622 1.23268 0.97671 0.83339 0.95742 0.89488 1.22322 0.94068 1.01929 0.96787 1.22287 0.97975 0.98757 0.95862 1.23413 0.80760 0.99018 0.96889 0.89529 1.21260 0.98294 0.87148 0.92066 1.49583 1.14423 1.16561 1.53122 1.20082 0.84646 0.83314 0.81517 1.90732 1.21163 1.80463 1.49031 1.21831 0.88112 0.91643 0.98778 0.86789 1.22221 0.94613 0.84400 1.00596 1.45034 1.23541 1.17806 1.53952 1.15837 0.82225 0.82663 0.78680 1.90985 1.40986 1.47372 1.67383 1.44838 1.25354 1.13853 1.53393 0.93476 0.88597 0.95730 0.93023 0.89430 0.92704 0.89704 0.96456 0.91570 0.89597 0.88774 0.72753 0.72313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.73 11.02 55.49 0.61 -24.12 16 2 C 0.00 0.11 4.99 -17.43 -0.09 0.03 16 3 Si 0.90 20.22 29.58 -169.99 -5.03 15.19 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.23 9.61 -15.06 -0.14 -6.38 16 8 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 9 N -0.59 -12.74 2.30 -171.81 -0.40 -13.14 16 10 C 0.17 3.82 4.60 -3.22 -0.01 3.81 16 11 C 0.10 1.84 4.08 -65.66 -0.27 1.58 16 12 H 0.09 1.61 7.92 -51.93 -0.41 1.20 16 13 C -0.11 -1.72 6.20 -25.25 -0.16 -1.88 16 14 C -0.11 -1.45 6.19 -25.25 -0.16 -1.60 16 15 C 0.10 1.37 3.91 -64.81 -0.25 1.12 16 16 H 0.09 0.81 7.38 -51.93 -0.38 0.42 16 17 C 0.14 2.40 5.95 -3.71 -0.02 2.38 16 18 N -0.60 -9.39 2.80 -151.89 -0.43 -9.81 16 19 C 0.52 8.19 7.04 -10.99 -0.08 8.11 16 20 O -0.54 -10.77 16.91 5.56 0.09 -10.68 16 21 C 0.11 1.23 3.43 -68.20 -0.23 1.00 16 22 H 0.11 1.07 7.63 -51.93 -0.40 0.68 16 23 C 0.11 0.93 7.70 -3.16 -0.02 0.91 16 24 N -0.74 -7.73 6.37 -64.70 -0.41 -8.14 16 25 C 0.71 10.31 8.92 -88.40 -0.79 9.52 16 26 O -0.59 -10.90 18.05 5.29 0.10 -10.81 16 27 N -0.71 -9.52 5.63 -59.32 -0.33 -9.85 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.10 2.37 6.20 -51.93 -0.32 2.05 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 37 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.43 3.48 8.96 -40.82 -0.37 3.11 16 40 H 0.43 5.65 8.96 -40.82 -0.37 5.29 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -33.29 321.82 -8.70 -42.00 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.53 Total: 5.91 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: -2.23 Total: 18.60 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.96 Total: -65.07 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.19 Total: -21.49 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.29 -8.70 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017867846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.766 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds