Wall clock time and date at job start Tue Mar 31 2020 03:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99770 * 2 1 4 4 O 1.20826 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00131 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55954 * 54.93857 * 5 3 2 7 7 C 1.53073 * 117.51077 * 200.64846 * 5 3 2 8 8 C 1.53006 * 117.49764 * 269.25770 * 5 3 2 9 9 H 1.08995 * 117.49910 * 144.99684 * 8 5 3 10 10 C 1.50701 * 117.49674 * 359.97438 * 8 5 3 11 11 O 1.21277 * 120.00259 * 303.41999 * 10 8 5 12 12 N 1.34776 * 119.99713 * 123.42774 * 10 8 5 13 13 C 1.46507 * 119.99794 * 179.97438 * 12 10 8 14 14 H 1.09002 * 115.51407 * 350.41059 * 13 12 10 15 15 C 1.53000 * 117.44155 * 204.99963 * 13 12 10 16 16 H 1.09002 * 119.53670 * 4.15910 * 15 13 12 17 17 C 1.54388 * 118.12071 * 160.85489 * 15 13 12 18 18 N 1.48150 * 104.61840 * 87.18926 * 17 15 13 19 19 C 1.36938 * 127.83570 * 140.39127 * 18 17 15 20 20 H 1.07998 * 119.99914 * 194.66796 * 19 18 17 21 21 C 1.38809 * 119.99964 * 14.67270 * 19 18 17 22 22 N 1.31620 * 120.00226 * 5.29759 * 21 19 18 23 23 Si 1.86805 * 119.99741 * 185.30677 * 21 19 18 24 24 H 1.48490 * 109.47372 * 59.99346 * 23 21 19 25 25 H 1.48497 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46826 * 299.99575 * 23 21 19 27 27 C 1.48145 * 104.32305 * 320.41159 * 18 17 15 28 28 C 1.53001 * 117.40408 * 135.77259 * 13 12 10 29 29 H 1.08996 * 119.54009 * 355.89342 * 28 13 12 30 30 H 1.08993 * 109.46887 * 299.99094 * 1 2 3 31 31 H 1.08996 * 109.47264 * 59.99500 * 1 2 3 32 32 H 1.09005 * 109.46330 * 179.97438 * 1 2 3 33 33 H 1.08989 * 117.51584 * 0.02562 * 7 5 3 34 34 H 1.09005 * 117.48604 * 214.95955 * 7 5 3 35 35 H 0.96999 * 120.00459 * 359.97438 * 12 10 8 36 36 H 1.09002 * 110.40462 * 205.97024 * 17 15 13 37 37 H 1.08996 * 110.40994 * 328.39976 * 17 15 13 38 38 H 0.97007 * 119.99623 * 179.97438 * 22 21 19 39 39 H 1.08997 * 110.40660 * 280.80678 * 27 18 17 40 40 H 1.09004 * 110.50569 * 158.41887 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0652 0.7357 -0.8058 7 6 4.2060 2.5806 0.4782 8 6 4.2714 1.3293 1.3562 9 1 5.2340 0.8255 1.4437 10 6 3.4077 1.3003 2.5908 11 8 2.5415 2.1351 2.7447 12 7 3.5981 0.3468 3.5241 13 6 2.7588 0.3189 4.7246 14 1 2.1181 1.1887 4.8699 15 6 3.3380 -0.3468 5.9746 16 1 4.3643 -0.7137 5.9613 17 6 2.7019 -0.0088 7.3401 18 7 1.5870 -0.9740 7.4824 19 6 1.1893 -1.6372 8.6125 20 1 0.5217 -2.4827 8.5357 21 6 1.6441 -1.2228 9.8568 22 7 2.3723 -0.1314 9.9613 23 14 1.2227 -2.2142 11.3829 24 1 1.7624 -3.5905 11.2438 25 1 1.8235 -1.5656 12.5760 26 1 -0.2525 -2.2747 11.5421 27 6 1.0005 -1.0593 6.1247 28 6 2.2162 -1.0395 5.1732 29 1 2.4068 -1.9224 4.5630 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0278 -0.0005 33 1 3.5385 3.3822 0.7939 34 1 5.1257 2.8998 -0.0124 35 1 4.2907 -0.3210 3.4010 36 1 3.4277 -0.1456 8.1417 37 1 2.3223 1.0130 7.3401 38 1 2.6898 0.1583 10.8309 39 1 0.3553 -0.2015 5.9349 40 1 0.4415 -1.9877 6.0079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025705338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:53 Heat of formation + Delta-G solvation = -25.929775 kcal Electronic energy + Delta-G solvation = -23513.289282 eV Core-core repulsion = 19910.438438 eV Total energy + Delta-G solvation = -3602.850844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98980 -39.76730 -38.55922 -36.91532 -35.93105 -34.48758 -32.65203 -30.29747 -28.34677 -27.14433 -26.13771 -25.03240 -24.19398 -21.61329 -20.85147 -20.49416 -19.85487 -19.28525 -18.31616 -17.14231 -16.95834 -16.72843 -16.33340 -15.88452 -15.18943 -14.72211 -14.50684 -14.34993 -13.67381 -13.39318 -13.25392 -13.14898 -12.76248 -12.36774 -12.22602 -12.15592 -11.59870 -11.49492 -11.14032 -11.05885 -11.00405 -10.90178 -10.83166 -10.58945 -10.38879 -10.22976 -10.16792 -9.90213 -9.74431 -9.20961 -8.74985 -8.35951 -6.88766 -5.78992 -3.15278 1.87219 2.37865 2.44430 2.99544 3.38550 3.42689 3.44065 3.49688 4.22259 4.24299 4.37193 4.42994 4.47421 4.65639 4.82401 4.98808 5.09975 5.14846 5.21595 5.32488 5.36964 5.37288 5.44544 5.56582 5.77787 5.82028 5.89889 6.12976 6.21091 6.24596 6.51573 6.67971 6.77995 6.88819 7.34786 7.51729 7.53931 7.62102 7.71363 8.20953 8.21256 9.10536 9.72732 10.49055 11.33961 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.003185 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.715860 B = 8787.855856 C = 9338.767978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.486 3.514 4 O -0.484 6.484 5 C -0.138 4.138 6 H 0.148 0.852 7 C -0.112 4.112 8 C -0.166 4.166 9 H 0.137 0.863 10 C 0.533 3.467 11 O -0.525 6.525 12 N -0.689 5.689 13 C 0.095 3.905 14 H 0.131 0.869 15 C -0.177 4.177 16 H 0.103 0.897 17 C 0.182 3.818 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.156 3.844 28 C -0.185 4.185 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.024 0.976 38 H 0.255 0.745 39 H 0.027 0.973 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -0.090 -21.480 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.327 3.673 4 O -0.369 6.369 5 C -0.157 4.157 6 H 0.166 0.834 7 C -0.149 4.149 8 C -0.187 4.187 9 H 0.155 0.845 10 C 0.319 3.681 11 O -0.401 6.401 12 N -0.337 5.337 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.198 4.198 16 H 0.121 0.879 17 C 0.056 3.944 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.029 3.971 28 C -0.206 4.206 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.803 0.810 -21.051 21.607 hybrid contribution 0.127 -1.039 0.653 1.234 sum 4.930 -0.229 -20.398 20.987 Atomic orbital electron populations 1.23292 0.75843 1.03795 1.02726 1.86456 1.23732 1.32993 1.84129 1.22391 0.90247 0.81693 0.72965 1.90690 1.66441 1.36322 1.43480 1.21756 0.88891 1.06095 0.98960 0.83445 1.23192 1.02584 0.90819 0.98303 1.22421 1.01059 1.05966 0.89252 0.84487 1.19511 0.83851 0.81360 0.83404 1.90786 1.33527 1.38312 1.77505 1.45270 1.37070 1.30991 1.20376 1.21875 0.97190 0.97646 0.84323 0.85178 1.24723 0.97586 1.03678 0.93846 0.87914 1.21157 0.91030 0.91619 0.90591 1.45175 1.32285 1.50176 1.04043 1.18973 1.25601 1.08005 0.82949 0.90509 1.24898 1.00742 0.97120 0.97487 1.69841 1.39886 1.23259 1.23382 0.86156 0.78001 0.79118 0.82216 1.21084 1.21511 1.20983 1.21109 0.91833 0.98764 0.85369 1.24377 0.99157 0.95152 1.01924 0.87914 0.91490 0.91999 0.87970 0.85970 0.86139 0.76593 0.88271 0.95804 0.93449 0.95551 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.40 10.57 -39.26 -0.41 -4.81 16 3 C 0.49 6.37 6.19 36.01 0.22 6.59 16 4 O -0.48 -7.88 16.04 -19.17 -0.31 -8.19 16 5 C -0.14 -1.24 6.30 -91.73 -0.58 -1.82 16 6 H 0.15 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.11 -0.97 9.55 -26.69 -0.25 -1.22 16 8 C -0.17 -1.52 6.19 -91.76 -0.57 -2.09 16 9 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.53 7.53 6.92 -10.99 -0.08 7.46 16 11 O -0.53 -9.80 14.98 5.56 0.08 -9.71 16 12 N -0.69 -9.25 5.56 -53.80 -0.30 -9.55 16 13 C 0.10 1.63 5.98 -67.93 -0.41 1.23 16 14 H 0.13 2.58 7.40 -51.93 -0.38 2.19 16 15 C -0.18 -3.33 7.06 -89.22 -0.63 -3.96 16 16 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 17 C 0.18 4.40 5.76 -2.41 -0.01 4.39 16 18 N -0.59 -15.31 3.38 -168.86 -0.57 -15.88 16 19 C -0.23 -6.33 10.37 -15.06 -0.16 -6.49 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.16 5.44 -17.43 -0.09 -0.25 16 22 N -0.92 -26.77 10.67 55.49 0.59 -26.18 16 23 Si 0.92 21.85 29.56 -169.99 -5.02 16.83 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.16 3.34 7.04 -2.41 -0.02 3.32 16 28 C -0.18 -3.32 7.06 -89.21 -0.63 -3.95 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 1.43 7.41 -51.94 -0.38 1.05 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 4.07 8.83 -40.82 -0.36 3.71 16 36 H 0.10 2.66 6.30 -51.93 -0.33 2.33 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -35.18 342.10 -8.57 -43.75 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.65 Total: 3.94 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.13 Total: 4.65 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.28 Total: -51.61 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.64 Total: -22.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.18 -8.57 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025705338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.824 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds