Wall clock time and date at job start Tue Mar 31 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35369 * 116.99799 * 2 1 4 4 C 1.36091 * 125.57431 * 179.97438 * 3 2 1 5 5 C 1.39916 * 107.17328 * 179.97438 * 4 3 2 6 6 C 1.37818 * 106.67820 * 359.97438 * 5 4 3 7 7 C 1.46128 * 126.03065 * 179.97438 * 6 5 4 8 8 O 1.21767 * 120.00168 * 6.28782 * 7 6 5 9 9 N 1.34783 * 120.00021 * 186.29172 * 7 6 5 10 10 C 1.46501 * 119.99729 * 356.38170 * 9 7 6 11 11 C 1.46500 * 120.00231 * 176.38707 * 9 7 6 12 12 H 1.09002 * 110.63704 * 358.30639 * 11 9 7 13 13 C 1.55155 * 110.72098 * 234.97492 * 11 9 7 14 14 C 1.55129 * 101.48656 * 205.96712 * 13 11 9 15 15 N 1.47420 * 104.72100 * 37.29484 * 14 13 11 16 16 C 1.36935 * 125.64921 * 155.82001 * 15 14 13 17 17 H 1.08002 * 120.00380 * 185.69781 * 16 15 14 18 18 C 1.38811 * 119.99820 * 5.69499 * 16 15 14 19 19 N 1.31620 * 120.00108 * 34.86797 * 18 16 15 20 20 Si 1.86799 * 120.00215 * 214.87030 * 18 16 15 21 21 H 1.48498 * 109.47684 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47162 * 300.00199 * 20 18 16 23 23 H 1.48501 * 109.47176 * 59.99773 * 20 18 16 24 24 C 1.47020 * 108.70514 * 335.55318 * 15 14 13 25 25 O 1.34005 * 125.57898 * 0.27807 * 3 2 1 26 26 H 1.09000 * 109.47402 * 300.00440 * 1 2 3 27 27 H 1.08996 * 109.47125 * 60.00382 * 1 2 3 28 28 H 1.09005 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08000 * 126.41662 * 359.97438 * 4 3 2 30 30 H 1.08006 * 126.65532 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.47557 * 275.68626 * 10 9 7 32 32 H 1.08997 * 109.47298 * 35.69052 * 10 9 7 33 33 H 1.09008 * 109.46701 * 155.69076 * 10 9 7 34 34 H 1.09006 * 111.00299 * 324.20889 * 13 11 9 35 35 H 1.09000 * 111.00563 * 88.01836 * 13 11 9 36 36 H 1.08994 * 110.49400 * 278.45341 * 14 13 11 37 37 H 1.09002 * 110.33960 * 156.06146 * 14 13 11 38 38 H 0.96999 * 120.00196 * 355.63455 * 19 18 16 39 39 H 1.08998 * 109.88604 * 120.70672 * 24 15 14 40 40 H 1.09001 * 109.88436 * 241.87364 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4091 0.0005 5 6 3.5984 2.7925 -0.0003 6 6 2.3521 3.3810 -0.0019 7 6 2.0794 4.8166 -0.0026 8 8 2.9957 5.6103 -0.1173 9 7 0.8137 5.2622 0.1238 10 6 -0.2964 4.3079 0.1822 11 6 0.5479 6.7007 0.2027 12 1 1.4797 7.2656 0.1747 13 6 -0.2657 7.0395 1.4796 14 6 -0.9884 8.3428 1.0488 15 7 -1.3264 8.1320 -0.3706 16 6 -2.3371 8.7564 -1.0516 17 1 -2.5639 8.4664 -2.0669 18 6 -3.0702 9.7622 -0.4368 19 7 -2.4828 10.5813 0.4095 20 14 -4.8904 9.9530 -0.8107 21 1 -5.4391 11.0920 -0.0316 22 1 -5.0733 10.2114 -2.2616 23 1 -5.6061 8.7071 -0.4358 24 6 -0.3945 7.1451 -0.9357 25 8 1.4264 2.3956 0.0053 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.1528 0.6453 0.0013 30 1 4.5515 3.3006 -0.0006 31 1 -0.5935 4.0338 -0.8300 32 1 0.0196 3.4155 0.7224 33 1 -1.1413 4.7646 0.6977 34 1 -0.9809 6.2493 1.7082 35 1 0.3952 7.2224 2.3269 36 1 -0.3250 9.2007 1.1574 37 1 -1.8946 8.4858 1.6374 38 1 -1.5538 10.4437 0.6522 39 1 -0.9487 6.2865 -1.3146 40 1 0.1841 7.5997 -1.7398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033534811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:39 Heat of formation + Delta-G solvation = -12.120063 kcal Electronic energy + Delta-G solvation = -23985.614709 eV Core-core repulsion = 20383.362699 eV Total energy + Delta-G solvation = -3602.252010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.00996 -39.86972 -38.81167 -37.54502 -35.11569 -33.41897 -32.34634 -29.99186 -29.19162 -28.01520 -27.42758 -26.49601 -24.41079 -22.95576 -22.23364 -20.66410 -20.27484 -19.51662 -18.70956 -17.64149 -17.54332 -17.32629 -16.44125 -15.72354 -15.57827 -14.71103 -14.55441 -14.35600 -13.81957 -13.56595 -13.47266 -13.43143 -13.22977 -13.04889 -12.86277 -12.56622 -12.36206 -12.00069 -11.88154 -11.67782 -11.13508 -10.83266 -10.77726 -10.44789 -10.25873 -10.18707 -10.08551 -10.01453 -9.68561 -8.64116 -8.29291 -8.23874 -6.99455 -6.22399 -3.06422 0.88667 1.94441 2.13204 2.75687 3.08256 3.13301 3.48317 3.52839 3.70905 4.42348 4.56168 4.59348 4.64232 4.69836 4.97365 5.10513 5.17458 5.20835 5.22455 5.33411 5.38785 5.46400 5.55700 5.58921 5.61620 5.80370 5.92616 6.04630 6.06809 6.22706 6.30724 6.39165 6.56517 6.77291 6.85876 6.90909 6.96377 7.37597 7.74368 8.05457 8.47392 8.97641 9.82119 10.35172 11.18849 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.003549 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.048233 B = 7887.159729 C = 8628.631231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.203 3.797 4 C -0.241 4.241 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.602 3.398 8 O -0.525 6.525 9 N -0.592 5.592 10 C 0.074 3.926 11 C 0.127 3.873 12 H 0.108 0.892 13 C -0.144 4.144 14 C 0.144 3.856 15 N -0.602 5.602 16 C -0.350 4.350 17 H 0.070 0.930 18 C -0.024 4.024 19 N -0.912 5.912 20 Si 1.067 2.933 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.295 1.295 24 C 0.133 3.867 25 O -0.181 6.181 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.270 0.730 39 H 0.031 0.969 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 -21.606 1.828 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.107 3.893 4 C -0.260 4.260 5 C -0.106 4.106 6 C -0.142 4.142 7 C 0.391 3.609 8 O -0.403 6.403 9 N -0.323 5.323 10 C -0.069 4.069 11 C 0.024 3.976 12 H 0.126 0.874 13 C -0.184 4.184 14 C 0.018 3.982 15 N -0.330 5.330 16 C -0.477 4.477 17 H 0.088 0.912 18 C -0.226 4.226 19 N -0.554 5.554 20 Si 0.897 3.103 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.222 1.222 24 C 0.006 3.994 25 O -0.082 6.082 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.179 0.821 30 H 0.184 0.816 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.875 -20.308 1.992 21.234 hybrid contribution 1.109 -1.142 -0.437 1.650 sum 6.984 -21.450 1.555 22.612 Atomic orbital electron populations 1.23198 0.76537 1.04995 1.02859 1.86395 1.23193 1.18998 1.89191 1.20953 0.89771 0.78662 0.99914 1.20761 0.92091 0.96848 1.16336 1.21969 0.97795 0.92498 0.98318 1.21992 0.86929 0.87330 1.17990 1.16480 0.83185 0.83990 0.77261 1.90892 1.44193 1.53804 1.51457 1.47718 1.05793 1.07754 1.70998 1.21980 0.90300 0.92252 1.02339 1.22308 0.99995 0.78479 0.96808 0.87369 1.23256 0.98893 0.99986 0.96219 1.21589 0.97429 0.92606 0.86560 1.44569 1.35113 1.47640 1.05714 1.19696 1.08305 1.20212 0.99460 0.91164 1.25707 1.05141 0.92331 0.99441 1.70858 1.15009 1.30301 1.39198 0.83441 0.75450 0.75807 0.75556 1.21146 1.22014 1.22227 1.21493 0.90897 0.93237 0.93799 1.84276 1.37036 1.14060 1.72795 0.91713 0.91635 0.87177 0.82061 0.81555 0.92360 0.90598 0.89673 0.91084 0.91316 0.95547 0.92326 0.91788 0.95145 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.38 10.55 -41.03 -0.43 -2.82 16 3 C 0.20 2.17 7.86 29.96 0.24 2.40 16 4 C -0.24 -2.44 10.89 -39.73 -0.43 -2.88 16 5 C -0.09 -0.99 10.67 -39.11 -0.42 -1.41 16 6 C -0.09 -1.25 6.80 -36.57 -0.25 -1.49 16 7 C 0.60 9.76 7.63 -13.09 -0.10 9.66 16 8 O -0.52 -9.93 16.25 5.13 0.08 -9.85 16 9 N -0.59 -9.38 2.88 -173.57 -0.50 -9.88 16 10 C 0.07 0.95 8.40 59.85 0.50 1.46 16 11 C 0.13 2.34 3.35 -66.10 -0.22 2.11 16 12 H 0.11 2.12 7.00 -51.93 -0.36 1.75 16 13 C -0.14 -2.60 6.60 -24.46 -0.16 -2.76 16 14 C 0.14 3.33 5.18 -2.41 -0.01 3.31 16 15 N -0.60 -15.36 3.37 -169.94 -0.57 -15.93 16 16 C -0.35 -9.94 10.01 -15.06 -0.15 -10.09 16 17 H 0.07 2.00 8.02 -52.49 -0.42 1.58 16 18 C -0.02 -0.69 4.96 -17.43 -0.09 -0.78 16 19 N -0.91 -27.56 12.96 55.49 0.72 -26.84 16 20 Si 1.07 25.30 30.03 -169.99 -5.11 20.19 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.13 2.85 6.88 -3.07 -0.02 2.83 16 25 O -0.18 -2.13 6.73 -19.27 -0.13 -2.26 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.08 0.85 5.33 -51.93 -0.28 0.58 16 33 H 0.08 1.12 6.13 -51.92 -0.32 0.81 16 34 H 0.07 1.20 6.15 -51.93 -0.32 0.88 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 37 H 0.06 1.47 7.49 -51.93 -0.39 1.08 16 38 H 0.27 8.13 5.76 -40.82 -0.24 7.89 16 39 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -33.40 328.99 -6.24 -39.64 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.23 Total: -0.77 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.03 Total: 3.57 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.35 Total: -52.65 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.48 Total: -14.93 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.11 Total: 20.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.40 -6.24 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033534811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.520 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds