Wall clock time and date at job start Tue Mar 31 2020 04:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35368 * 127.24421 * 2 1 4 4 N 1.35031 * 107.22256 * 179.84614 * 3 2 1 5 5 H 0.97009 * 124.88323 * 180.18499 * 4 3 2 6 6 N 1.28466 * 110.23571 * 0.43436 * 4 3 2 7 7 C 1.31807 * 110.07181 * 359.73280 * 6 4 3 8 8 C 1.47706 * 126.51854 * 179.97438 * 7 6 4 9 9 O 1.21572 * 120.00047 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00496 * 0.04314 * 8 7 6 11 11 C 1.46501 * 120.00666 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47161 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.51180 * 60.00001 * 12 11 10 14 14 C 1.53296 * 109.50909 * 180.10396 * 12 11 10 15 15 N 1.47150 * 108.38210 * 172.22669 * 14 12 11 16 16 C 1.36942 * 120.98191 * 129.48193 * 15 14 12 17 17 H 1.08001 * 120.00215 * 206.22329 * 16 15 14 18 18 C 1.38816 * 119.99679 * 26.23248 * 16 15 14 19 19 N 1.31617 * 120.00291 * 16.89853 * 18 16 15 20 20 Si 1.86800 * 119.99646 * 196.90738 * 18 16 15 21 21 H 1.48494 * 109.47623 * 59.99276 * 20 18 16 22 22 H 1.48500 * 109.47167 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47072 * 299.99349 * 20 18 16 24 24 C 1.47153 * 118.03834 * 309.46407 * 15 14 12 25 25 C 1.53295 * 108.38369 * 50.53404 * 24 15 14 26 26 O 1.42958 * 109.26362 * 307.72402 * 25 24 15 27 27 H 1.08998 * 109.47168 * 269.68073 * 1 2 3 28 28 H 1.08999 * 109.46786 * 149.68130 * 1 2 3 29 29 H 1.09003 * 109.47184 * 29.68747 * 1 2 3 30 30 H 1.07994 * 126.38725 * 359.97438 * 3 2 1 31 31 H 0.97004 * 119.99105 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.46931 * 300.00398 * 11 10 8 33 33 H 1.09003 * 109.46744 * 59.99595 * 11 10 8 34 34 H 1.08998 * 109.67884 * 291.94746 * 14 12 11 35 35 H 1.08999 * 109.68329 * 52.46510 * 14 12 11 36 36 H 0.96998 * 120.00077 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.68168 * 170.26189 * 24 15 14 38 38 H 1.08998 * 109.67624 * 290.77646 * 24 15 14 39 39 H 1.08999 * 109.51250 * 67.62579 * 25 24 15 40 40 H 1.09003 * 109.51210 * 187.77772 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 0.0035 5 1 4.3887 1.1730 0.0068 6 7 3.5998 -0.6693 -0.0036 7 6 2.3635 -1.1263 -0.0062 8 6 1.9507 -2.5445 -0.0145 9 8 0.7699 -2.8338 -0.0166 10 7 2.8829 -3.5178 -0.0194 11 6 2.4734 -4.9244 -0.0271 12 6 3.7159 -5.8172 -0.0322 13 1 4.3114 -5.6174 0.8586 14 6 3.2884 -7.2894 -0.0429 15 7 4.4879 -8.1195 -0.2364 16 6 4.7578 -9.1731 0.5957 17 1 5.7767 -9.5018 0.7377 18 6 3.7217 -9.8187 1.2565 19 7 2.4803 -9.6581 0.8495 20 14 4.0892 -10.9151 2.7235 21 1 4.7495 -10.1154 3.7863 22 1 2.8209 -11.4826 3.2474 23 1 4.9895 -12.0188 2.3033 24 6 5.3886 -7.7843 -1.3507 25 6 5.7137 -6.2881 -1.2764 26 8 4.4955 -5.5440 -1.1990 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3633 -0.8871 -0.5188 29 1 -0.3634 0.8928 -0.5090 30 1 2.0220 2.1138 -0.0004 31 1 3.8250 -3.2869 -0.0179 32 1 1.8782 -5.1344 0.8615 33 1 1.8787 -5.1248 -0.9184 34 1 2.8168 -7.5415 0.9069 35 1 2.5863 -7.4619 -0.8586 36 1 1.7564 -10.1095 1.3111 37 1 6.3077 -8.3644 -1.2671 38 1 4.8987 -8.0075 -2.2985 39 1 6.3173 -6.0902 -0.3906 40 1 6.2659 -5.9907 -2.1679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035362546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:57 Heat of formation + Delta-G solvation = -9.397954 kcal Electronic energy + Delta-G solvation = -23565.361896 eV Core-core repulsion = 19995.520676 eV Total energy + Delta-G solvation = -3569.841219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.61298 -40.69790 -39.84534 -36.47985 -35.87743 -33.96323 -33.28932 -32.93043 -31.82410 -29.12865 -28.08284 -27.38601 -25.21571 -24.71620 -23.14701 -21.69986 -21.48053 -20.89604 -19.13812 -18.89510 -18.10638 -17.54476 -17.12500 -16.81031 -16.77479 -16.11213 -15.67655 -15.55252 -15.40026 -15.04165 -14.69714 -14.58170 -14.19922 -13.98642 -13.79453 -13.69561 -13.18837 -13.02297 -12.98661 -12.64996 -12.53690 -12.19868 -12.12413 -11.88939 -11.82223 -11.35166 -11.14622 -10.79714 -10.55189 -10.48746 -10.10732 -9.76414 -8.76162 -7.91230 -5.39001 0.51989 1.20358 1.46608 1.49341 1.56389 1.90362 2.27737 2.34331 2.48614 2.78286 3.23303 3.43326 3.49777 3.93857 4.02211 4.05933 4.19076 4.26971 4.43885 4.50081 4.52976 4.58589 4.60277 4.66837 4.81228 4.93626 4.95855 5.05555 5.06054 5.21437 5.21943 5.32649 5.51773 5.57280 5.59441 6.17573 6.25500 6.31974 6.46452 6.89723 7.04899 7.14945 7.73764 8.27872 9.14646 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.003350 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.152677 B = 8356.735311 C = 8934.288674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.177 4.177 3 C 0.010 3.990 4 N -0.362 5.362 5 H 0.465 0.535 6 N -0.273 5.273 7 C -0.043 4.043 8 C 0.594 3.406 9 O -0.567 6.567 10 N -0.700 5.700 11 C 0.143 3.857 12 C 0.076 3.924 13 H 0.062 0.938 14 C 0.161 3.839 15 N -0.615 5.615 16 C -0.269 4.269 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.274 1.274 24 C 0.103 3.897 25 C 0.056 3.944 26 O -0.391 6.391 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.234 0.766 31 H 0.414 0.586 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.002 0.998 36 H 0.252 0.748 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 24.437 -1.458 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.187 4.187 3 C -0.135 4.135 4 N -0.078 5.078 5 H 0.314 0.686 6 N -0.111 5.111 7 C -0.202 4.202 8 C 0.380 3.620 9 O -0.445 6.445 10 N -0.351 5.351 11 C 0.019 3.981 12 C 0.017 3.983 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.339 5.339 16 C -0.399 4.399 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.799 3.201 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.200 1.200 24 C -0.023 4.023 25 C -0.021 4.021 26 O -0.310 6.310 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.774 23.850 -1.546 24.197 hybrid contribution -0.060 -0.829 0.756 1.124 sum 3.715 23.021 -0.790 23.332 Atomic orbital electron populations 1.20141 0.87831 1.03045 1.02400 1.20732 0.98357 0.90780 1.08806 1.23319 0.82953 1.01667 1.05601 1.43367 1.09881 1.03468 1.51127 0.68579 1.73479 1.22463 0.95719 1.19479 1.21709 0.90937 0.94320 1.13242 1.17315 0.85045 0.83801 0.75853 1.90745 1.18100 1.83466 1.52177 1.45698 1.10480 1.05300 1.73599 1.21180 0.95387 0.79135 1.02435 1.22763 0.91844 0.95322 0.88399 0.92028 1.21075 0.88448 0.86931 1.00150 1.44347 1.25436 1.32505 1.31634 1.19524 0.92600 1.08010 1.19768 0.90820 1.25863 0.95484 1.00043 1.03188 1.70174 0.99557 1.46950 1.41334 0.85278 0.76592 0.78645 0.79546 1.20179 1.22047 1.19976 1.21817 0.94611 0.95899 0.89931 1.23095 0.85473 0.90926 1.02645 1.87800 1.34900 1.64964 1.43379 0.91479 0.92945 0.88956 0.74963 0.74955 0.90174 0.91884 0.91323 0.97983 0.93880 0.90829 0.96588 0.92887 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.93 71.24 0.71 -0.82 16 2 C -0.18 -3.77 6.25 -19.72 -0.12 -3.90 16 3 C 0.01 0.11 11.97 83.54 1.00 1.11 16 4 N -0.36 -4.62 6.83 -57.51 -0.39 -5.01 16 5 H 0.47 1.80 8.96 -219.98 -1.97 -0.17 16 6 N -0.27 -6.20 11.92 -48.18 -0.57 -6.77 16 7 C -0.04 -1.19 7.13 42.46 0.30 -0.88 16 8 C 0.59 20.27 7.82 86.75 0.68 20.95 16 9 O -0.57 -22.52 15.11 -3.94 -0.06 -22.58 16 10 N -0.70 -23.03 5.45 -466.11 -2.54 -25.57 16 11 C 0.14 5.30 5.37 86.38 0.46 5.76 16 12 C 0.08 3.03 2.86 30.69 0.09 3.11 16 13 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 14 C 0.16 7.99 4.73 86.35 0.41 8.39 16 15 N -0.61 -31.46 3.05 -697.54 -2.13 -33.58 16 16 C -0.27 -14.82 9.65 84.03 0.81 -14.01 16 17 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 18 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 19 N -0.93 -55.74 11.14 21.65 0.24 -55.50 16 20 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.10 4.27 6.74 86.35 0.58 4.85 16 25 C 0.06 1.89 6.98 72.08 0.50 2.39 16 26 O -0.39 -14.74 10.14 -148.98 -1.51 -16.25 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.38 6.72 -2.39 -0.02 1.37 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.23 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.41 12.45 8.08 -92.71 -0.75 11.70 16 32 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 3.78 6.14 -2.39 -0.01 3.76 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 36 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -75.83 334.31 -0.73 -76.57 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -1.64 Total: 17.34 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 5.84 Total: 24.59 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.39 Total: -126.44 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.57 Total: -38.83 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.83 -0.73 -76.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035362546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.167 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds