Wall clock time and date at job start Tue Mar 31 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33320 * 126.10696 * 2 1 4 4 C 1.30858 * 109.68346 * 180.02562 * 3 2 1 5 5 N 1.34489 * 109.16711 * 359.72722 * 4 3 2 6 6 H 0.97000 * 126.47485 * 180.29031 * 5 4 3 7 7 C 1.36664 * 126.10638 * 180.02562 * 2 1 3 8 8 C 1.46757 * 126.84652 * 359.97438 * 7 2 1 9 9 O 1.21683 * 119.99967 * 0.02562 * 8 7 2 10 10 N 1.34780 * 120.00074 * 180.02562 * 8 7 2 11 11 C 1.46496 * 119.99861 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47357 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.51076 * 305.10676 * 12 11 10 14 14 C 1.53297 * 109.51837 * 184.99928 * 12 11 10 15 15 N 1.47150 * 108.38389 * 187.72271 * 14 12 11 16 16 C 1.36938 * 120.97958 * 230.51296 * 15 14 12 17 17 H 1.07996 * 119.99416 * 153.64134 * 16 15 14 18 18 C 1.38805 * 119.99903 * 333.91044 * 16 15 14 19 19 N 1.31622 * 120.00630 * 342.82560 * 18 16 15 20 20 Si 1.86809 * 119.99701 * 162.82502 * 18 16 15 21 21 H 1.48500 * 109.47242 * 60.00087 * 20 18 16 22 22 H 1.48498 * 109.46878 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46785 * 300.00268 * 20 18 16 24 24 C 1.47153 * 118.03738 * 50.79398 * 15 14 12 25 25 C 1.53716 * 108.15464 * 309.15395 * 24 15 14 26 26 O 1.42954 * 109.15071 * 52.53895 * 25 24 15 27 27 H 1.09000 * 109.47151 * 269.97220 * 1 2 3 28 28 H 1.09003 * 109.46979 * 29.97838 * 1 2 3 29 29 H 1.09004 * 109.47172 * 149.97584 * 1 2 3 30 30 H 1.08006 * 125.41453 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00134 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.47272 * 60.00630 * 11 10 8 33 33 H 1.08998 * 109.47580 * 300.00053 * 11 10 8 34 34 H 1.09001 * 109.67341 * 67.99955 * 14 12 11 35 35 H 1.08995 * 109.70996 * 307.47198 * 14 12 11 36 36 H 0.96992 * 120.00430 * 179.97438 * 19 18 16 37 37 H 1.08994 * 109.68585 * 68.92759 * 24 15 14 38 38 H 1.08997 * 109.68117 * 189.48802 * 24 15 14 39 39 H 1.09001 * 109.66024 * 292.56678 * 25 24 15 40 40 H 1.09005 * 109.48103 * 172.40478 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6122 -0.6362 0.0051 6 1 4.4189 -1.1748 0.0100 7 6 2.3123 -1.1041 -0.0005 8 6 1.8821 -2.5072 -0.0006 9 8 0.6962 -2.7800 -0.0007 10 7 2.8005 -3.4937 -0.0006 11 6 2.3709 -4.8943 -0.0001 12 6 3.6005 -5.8049 -0.0009 13 1 4.2442 -5.5468 -0.8419 14 6 3.1554 -7.2664 -0.1263 15 7 4.3332 -8.1281 0.0621 16 6 4.6327 -9.1186 -0.8348 17 1 5.6538 -9.4500 -0.9521 18 6 3.6247 -9.6926 -1.5971 19 7 2.3659 -9.5467 -1.2409 20 14 4.0545 -10.6721 -3.1286 21 1 4.9198 -11.8198 -2.7555 22 1 2.8083 -11.1758 -3.7599 23 1 4.7770 -9.7988 -4.0881 24 6 5.1763 -7.8981 1.2461 25 6 5.5259 -6.4022 1.3018 26 8 4.3218 -5.6359 1.2219 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 4.3970 1.3745 -0.0011 31 1 3.7458 -3.2763 -0.0001 32 1 1.7730 -5.0913 -0.8900 33 1 1.7734 -5.0909 0.8900 34 1 2.7301 -7.4369 -1.1153 35 1 2.4105 -7.4906 0.6371 36 1 1.6616 -9.9475 -1.7738 37 1 4.6317 -8.1843 2.1458 38 1 6.0899 -8.4871 1.1663 39 1 6.1766 -6.1463 0.4656 40 1 6.0356 -6.1828 2.2400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035622540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:41 Heat of formation + Delta-G solvation = -1.321749 kcal Electronic energy + Delta-G solvation = -23624.690755 eV Core-core repulsion = 20055.199746 eV Total energy + Delta-G solvation = -3569.491009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39352 -39.40843 -38.41812 -35.04358 -34.45842 -33.37191 -31.61587 -31.32113 -30.72955 -27.81952 -27.11247 -25.51943 -23.42883 -23.07868 -21.96542 -21.09570 -20.11892 -19.63478 -18.82064 -17.07717 -16.28384 -16.16704 -15.84659 -15.67820 -15.19321 -14.59849 -14.43987 -14.38788 -14.16345 -13.88398 -13.33648 -13.08072 -13.03421 -12.86766 -12.84286 -12.31949 -12.17615 -11.62755 -11.17327 -10.90457 -10.81985 -10.59666 -10.50485 -10.35594 -10.21978 -10.12298 -9.91297 -9.75074 -9.18962 -9.10672 -8.62996 -8.60705 -6.84018 -5.91636 -3.35952 1.15219 2.66321 2.67191 3.13806 3.26825 3.30459 3.36781 3.37453 4.14023 4.24935 4.37409 4.66160 4.90084 5.05560 5.09782 5.28252 5.42998 5.50795 5.53456 5.73413 5.74701 5.81579 5.84264 5.91131 5.97789 6.01910 6.12052 6.25057 6.39582 6.44445 6.51257 6.69600 6.95495 6.97470 7.38675 7.41406 7.63262 7.72124 7.73002 8.14138 8.25574 9.03137 9.66037 10.22819 11.16391 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.003386 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.839773 B = 8268.112810 C = 8801.819650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.094 3.906 3 N -0.501 5.501 4 C 0.216 3.784 5 N -0.555 5.555 6 H 0.423 0.577 7 C -0.088 4.088 8 C 0.590 3.410 9 O -0.524 6.524 10 N -0.719 5.719 11 C 0.133 3.867 12 C 0.055 3.945 13 H 0.055 0.945 14 C 0.153 3.847 15 N -0.594 5.594 16 C -0.260 4.260 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.391 6.391 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.215 0.785 31 H 0.394 0.606 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.257 0.743 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 16.898 2.545 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 N -0.221 5.221 4 C -0.068 4.068 5 N -0.160 5.160 6 H 0.262 0.738 7 C -0.204 4.204 8 C 0.376 3.624 9 O -0.400 6.400 10 N -0.369 5.369 11 C 0.010 3.990 12 C -0.005 4.005 13 H 0.073 0.927 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.389 4.389 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.210 1.210 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.311 6.311 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.231 0.769 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.183 17.462 2.604 17.940 hybrid contribution 1.758 -1.695 -0.909 2.606 sum 4.941 15.768 1.695 16.610 Atomic orbital electron populations 1.20301 0.86462 1.03686 1.03089 1.21084 0.96957 0.86598 0.99402 1.70136 1.00477 1.30522 1.20998 1.25120 0.97424 0.82081 1.02156 1.43355 1.08117 1.08824 1.55706 0.73819 1.21042 0.84267 0.95284 1.19805 1.16828 0.86012 0.82511 0.77019 1.90830 1.15958 1.82834 1.50391 1.45897 1.09134 1.06876 1.75015 1.21477 0.96438 0.77604 1.03517 1.23161 0.92096 0.98661 0.86567 0.92691 1.21302 0.89194 0.83800 1.03105 1.44059 1.28617 1.36196 1.22930 1.19135 0.92565 1.12903 1.14338 0.91378 1.25065 0.95417 0.98406 1.00578 1.70000 0.98733 1.47285 1.38427 0.86328 0.77252 0.79849 0.83086 1.20775 1.21427 1.20964 1.21682 0.95700 0.93371 0.90999 1.23091 0.86032 0.93473 1.00235 1.87779 1.37435 1.67288 1.38587 0.90743 0.91162 0.89133 0.76874 0.77241 0.89512 0.90306 0.88524 0.94938 0.93252 0.95454 0.91924 0.93890 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.88 36.00 0.36 -0.57 16 2 C 0.09 1.23 7.15 -82.52 -0.59 0.64 16 3 N -0.50 -6.10 11.20 -10.65 -0.12 -6.22 16 4 C 0.22 1.81 13.01 -90.58 -1.18 0.64 16 5 N -0.55 -4.72 6.07 -10.79 -0.07 -4.79 16 6 H 0.42 2.27 8.32 -40.82 -0.34 1.93 16 7 C -0.09 -1.11 7.08 -82.14 -0.58 -1.69 16 8 C 0.59 8.65 7.79 -12.82 -0.10 8.55 16 9 O -0.52 -9.24 14.82 5.20 0.08 -9.17 16 10 N -0.72 -9.71 5.50 -61.59 -0.34 -10.05 16 11 C 0.13 2.15 5.35 -4.04 -0.02 2.12 16 12 C 0.05 0.98 2.81 -26.58 -0.07 0.90 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.15 3.48 4.73 -3.53 -0.02 3.46 16 15 N -0.59 -14.39 3.04 -171.58 -0.52 -14.91 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.03 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 19 N -0.90 -25.32 11.15 55.49 0.62 -24.71 16 20 Si 0.91 20.97 29.59 -169.99 -5.03 15.94 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 2.18 6.76 -3.31 -0.02 2.16 16 25 C 0.05 0.82 7.00 37.53 0.26 1.08 16 26 O -0.39 -6.88 10.34 -35.23 -0.36 -7.25 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.18 6.48 -51.93 -0.34 0.84 16 30 H 0.21 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.39 4.36 7.72 -40.82 -0.31 4.04 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -33.11 333.31 -8.42 -41.53 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.50 Total: 4.29 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.20 Total: 10.31 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.43 Total: -60.68 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.29 Total: -16.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.11 -8.42 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035622540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.207 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds