Wall clock time and date at job start Tue Mar 31 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30654 * 128.64071 * 2 1 4 4 O 1.20836 * 109.61501 * 179.97438 * 3 2 1 5 5 N 1.20904 * 115.91228 * 359.97438 * 4 3 2 6 6 C 1.31605 * 109.17745 * 359.69760 * 5 4 3 7 7 C 1.48275 * 128.71156 * 180.27990 * 6 5 4 8 8 O 1.21499 * 120.00315 * 174.71553 * 7 6 5 9 9 N 1.34777 * 120.00105 * 354.71202 * 7 6 5 10 10 C 1.46933 * 120.62927 * 5.36769 * 9 7 6 11 11 C 1.52754 * 109.00706 * 233.58016 * 10 9 7 12 12 C 1.53032 * 109.38668 * 305.59091 * 11 10 9 13 13 H 1.09005 * 109.44706 * 301.22375 * 12 11 10 14 14 N 1.46504 * 109.45911 * 181.26261 * 12 11 10 15 15 C 1.36933 * 120.00480 * 84.93105 * 14 12 11 16 16 H 1.08008 * 119.99772 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00293 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99811 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99887 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47159 * 90.00082 * 19 17 15 21 21 H 1.48501 * 109.47009 * 210.00078 * 19 17 15 22 22 H 1.48496 * 109.46953 * 329.99905 * 19 17 15 23 23 C 1.53040 * 109.54223 * 61.24046 * 12 11 10 24 24 C 1.46925 * 120.63145 * 185.64633 * 9 7 6 25 25 H 1.09001 * 109.58412 * 246.15550 * 24 9 7 26 26 C 1.52995 * 109.58735 * 6.58196 * 24 9 7 27 27 H 1.08997 * 109.47272 * 90.03038 * 1 2 3 28 28 H 1.09002 * 109.47341 * 210.03097 * 1 2 3 29 29 H 1.09007 * 109.47065 * 330.03125 * 1 2 3 30 30 H 1.09001 * 109.58287 * 353.42111 * 10 9 7 31 31 H 1.08999 * 109.58388 * 113.84264 * 10 9 7 32 32 H 1.09007 * 109.56501 * 185.55012 * 11 10 9 33 33 H 1.08999 * 109.38789 * 65.52082 * 11 10 9 34 34 H 0.97005 * 119.99771 * 264.92951 * 14 12 11 35 35 H 0.96998 * 119.99559 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.50022 * 178.68462 * 23 12 11 37 37 H 1.08998 * 109.52327 * 58.59998 * 23 12 11 38 38 H 1.09006 * 109.47007 * 52.55844 * 26 24 9 39 39 H 1.09004 * 109.47236 * 172.55336 * 26 24 9 40 40 H 1.08998 * 109.47541 * 292.55669 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 0.0005 5 7 3.6101 -0.5737 0.0014 6 6 2.4279 -1.1520 0.0081 7 6 2.1033 -2.5987 0.0173 8 8 0.9483 -2.9616 0.1196 9 7 3.0895 -3.5113 -0.0879 10 6 4.4982 -3.0938 -0.0943 11 6 5.1836 -3.6747 -1.3297 12 6 4.9768 -5.1907 -1.3597 13 1 5.3886 -5.6312 -0.4516 14 7 5.6591 -5.7534 -2.5277 15 6 6.9902 -6.0669 -2.4581 16 1 7.5373 -5.8990 -1.5421 17 6 7.6364 -6.6004 -3.5647 18 7 8.9161 -6.9013 -3.4978 19 14 6.6900 -6.8915 -5.1487 20 1 6.7654 -5.6775 -6.0005 21 1 7.2826 -8.0433 -5.8748 22 1 5.2697 -7.1851 -4.8298 23 6 3.4808 -5.5017 -1.4442 24 6 2.7761 -4.9420 -0.2044 25 1 3.1280 -5.4667 0.6839 26 6 1.2640 -5.1260 -0.3470 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 4.5567 -2.0058 -0.1232 31 1 4.9933 -3.4647 0.8031 32 1 6.2504 -3.4537 -1.2932 33 1 4.7507 -3.2307 -2.2261 34 1 5.1678 -5.9038 -3.3505 35 1 9.3676 -7.2745 -4.2710 36 1 3.3355 -6.5810 -1.4891 37 1 3.0629 -5.0408 -2.3392 38 1 0.8969 -4.4999 -1.1603 39 1 1.0440 -6.1710 -0.5653 40 1 0.7736 -4.8380 0.5829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044881867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:50 Heat of formation + Delta-G solvation = 98.241901 kcal Electronic energy + Delta-G solvation = -24359.979789 eV Core-core repulsion = 20794.806184 eV Total energy + Delta-G solvation = -3565.173605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.97428 -41.73061 -38.98450 -36.55217 -36.27361 -35.98046 -33.94650 -33.61980 -31.66624 -30.38527 -28.66917 -26.88975 -25.90842 -24.53072 -23.45896 -23.30000 -21.78523 -20.91640 -20.15450 -19.61212 -18.86218 -18.14175 -17.32183 -16.76889 -16.43720 -15.96397 -15.70632 -15.16921 -15.12100 -14.92485 -14.69157 -14.48299 -14.33609 -14.27742 -13.97249 -13.54226 -13.32192 -13.15111 -12.97138 -12.85907 -12.65890 -12.47681 -12.27270 -12.09783 -12.07810 -11.85661 -11.75162 -11.46660 -11.37075 -10.92795 -10.58320 -9.80868 -9.33022 -8.02402 -5.35956 -0.40794 0.23417 1.37148 1.37587 1.39706 1.47116 1.75242 2.23719 2.32022 2.47880 2.66741 3.28977 3.31461 3.44625 3.61701 3.80506 3.97952 4.01061 4.09131 4.18960 4.26582 4.46345 4.52203 4.59847 4.60804 4.71829 4.79700 4.87646 4.92858 5.00932 5.09216 5.11690 5.19450 5.34210 5.40591 5.59098 5.77292 6.09645 6.21594 6.74370 7.07357 7.35036 7.83231 8.01810 9.19015 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.004092 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.284903 B = 6841.469406 C = 7471.586646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.365 5.365 4 O 0.334 5.666 5 N -0.322 5.322 6 C -0.052 4.052 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.585 5.585 10 C 0.088 3.912 11 C -0.138 4.138 12 C 0.175 3.825 13 H 0.051 0.949 14 N -0.751 5.751 15 C -0.227 4.227 16 H 0.060 0.940 17 C -0.063 4.063 18 N -0.984 5.984 19 Si 0.951 3.049 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.251 1.251 23 C -0.128 4.128 24 C 0.150 3.850 25 H 0.093 0.907 26 C -0.130 4.130 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.219 12.482 8.845 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 N -0.092 5.092 4 O 0.112 5.888 5 N -0.044 5.044 6 C -0.217 4.217 7 C 0.388 3.612 8 O -0.394 6.394 9 N -0.317 5.317 10 C -0.035 4.035 11 C -0.179 4.179 12 C 0.067 3.933 13 H 0.069 0.931 14 N -0.393 5.393 15 C -0.358 4.358 16 H 0.078 0.922 17 C -0.254 4.254 18 N -0.634 5.634 19 Si 0.779 3.221 20 H -0.209 1.209 21 H -0.224 1.224 22 H -0.175 1.175 23 C -0.167 4.167 24 C 0.048 3.952 25 H 0.111 0.889 26 C -0.187 4.187 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.197 0.803 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.673 12.930 8.998 25.202 hybrid contribution -0.001 -0.846 -1.269 1.525 sum -19.674 12.084 7.729 24.348 Atomic orbital electron populations 1.20519 0.80747 1.06157 1.05770 1.26693 1.01452 0.84245 0.97464 1.75073 0.91159 1.24256 1.18683 1.85088 1.23609 1.16906 1.63152 1.75175 1.22920 0.92888 1.13463 1.26336 0.88454 0.98680 1.08228 1.16701 0.85237 0.81594 0.77697 1.90845 1.19600 1.78498 1.50455 1.48141 1.06680 1.07124 1.69755 1.22427 0.79172 1.03050 0.98857 1.22319 1.00357 0.98016 0.97185 1.20408 0.91451 0.91551 0.89868 0.93099 1.42803 1.07388 1.76834 1.12325 1.19028 0.85721 1.32985 0.98040 0.92192 1.25454 0.96526 1.01937 1.01495 1.69878 1.10728 1.51497 1.31328 0.85464 0.79257 0.77202 0.80177 1.20919 1.22388 1.17544 1.22235 0.94273 1.02131 0.98086 1.21457 0.97346 0.78101 0.98266 0.88925 1.22108 0.91769 1.01151 1.03636 0.87589 0.87964 0.87544 0.86206 0.89800 0.91946 0.93087 0.80312 0.93418 0.89481 0.91930 0.92667 0.91539 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.26 71.23 0.73 -0.16 16 2 C 0.07 1.28 7.79 45.17 0.35 1.63 16 3 N -0.36 -7.53 12.22 -51.80 -0.63 -8.16 16 4 O 0.33 7.26 11.65 140.85 1.64 8.90 16 5 N -0.32 -7.46 8.87 -52.05 -0.46 -7.92 16 6 C -0.05 -1.19 7.27 44.29 0.32 -0.86 16 7 C 0.60 14.67 7.52 86.91 0.65 15.32 16 8 O -0.52 -12.94 11.48 -3.71 -0.04 -12.98 16 9 N -0.58 -14.39 2.98 -798.75 -2.38 -16.77 16 10 C 0.09 2.27 6.32 86.22 0.54 2.81 16 11 C -0.14 -4.46 5.64 30.52 0.17 -4.29 16 12 C 0.18 6.15 2.73 45.01 0.12 6.28 16 13 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 14 N -0.75 -33.64 4.92 -322.81 -1.59 -35.23 16 15 C -0.23 -12.55 10.41 84.03 0.87 -11.67 16 16 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 18 N -0.98 -62.49 13.97 21.65 0.30 -62.19 16 19 Si 0.95 45.02 27.73 68.60 1.90 46.93 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 22 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 23 C -0.13 -3.56 4.84 30.67 0.15 -3.41 16 24 C 0.15 3.52 3.49 44.97 0.16 3.68 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 C -0.13 -2.77 7.61 71.98 0.55 -2.22 16 27 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.29 7.23 -2.39 -0.02 1.27 16 29 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.12 3.02 3.86 -30.00 -0.12 2.91 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.36 15.82 5.66 -92.70 -0.52 15.30 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.31 6.83 -2.38 -0.02 1.30 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.65 6.66 -2.39 -0.02 1.63 16 Total: -1.00 -66.11 321.90 4.22 -61.89 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.38 Total: 21.61 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.09 Total: 3.93 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -4.76 Total: -130.28 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 1.60 Total: -4.08 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.93 kcal Total: -66.11 4.22 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044881867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.134 kcal (2) G-P(sol) polarization free energy of solvation -66.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds