Wall clock time and date at job start Tue Mar 31 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36343 * 126.19836 * 2 1 4 4 C 1.36246 * 106.88981 * 179.97438 * 3 2 1 5 5 C 1.47255 * 126.16476 * 179.97438 * 4 3 2 6 6 O 1.21629 * 119.99966 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99650 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99427 * 180.02562 * 7 5 4 9 9 C 1.52997 * 110.64182 * 300.69873 * 8 7 5 10 10 C 1.55163 * 110.86719 * 177.45118 * 8 7 5 11 11 C 1.54904 * 101.58073 * 277.06821 * 10 8 7 12 12 N 1.47421 * 104.83620 * 322.98869 * 11 10 8 13 13 C 1.36936 * 125.65035 * 204.09628 * 12 11 10 14 14 H 1.08003 * 119.99872 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99824 * 0.04033 * 13 12 11 16 16 N 1.31611 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99647 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47479 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47174 * 120.00294 * 17 15 13 20 20 H 1.48501 * 109.47230 * 240.00266 * 17 15 13 21 21 C 1.47025 * 108.70178 * 24.13268 * 12 11 10 22 22 N 1.36030 * 107.66748 * 0.24281 * 4 3 2 23 23 C 1.30698 * 108.94299 * 359.59613 * 22 4 3 24 24 O 1.35460 * 125.54843 * 180.15185 * 23 22 4 25 25 H 1.09002 * 109.47522 * 90.00120 * 1 2 3 26 26 H 1.09001 * 109.46895 * 209.99522 * 1 2 3 27 27 H 1.08998 * 109.47783 * 329.99552 * 1 2 3 28 28 H 1.08006 * 126.55608 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00318 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.47153 * 181.69032 * 9 8 7 31 31 H 1.09001 * 109.46832 * 61.69223 * 9 8 7 32 32 H 1.09004 * 109.47261 * 301.69204 * 9 8 7 33 33 H 1.08995 * 111.00334 * 35.14471 * 10 8 7 34 34 H 1.08999 * 111.00142 * 158.99183 * 10 8 7 35 35 H 1.09007 * 110.36208 * 204.15318 * 11 10 8 36 36 H 1.08996 * 110.45982 * 81.88497 * 11 10 8 37 37 H 0.97004 * 119.99847 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.88484 * 239.52534 * 21 12 11 39 39 H 1.08998 * 110.01061 * 118.42466 * 21 12 11 40 40 H 0.96701 * 114.00165 * 270.29112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2702 1.1003 0.0000 4 6 3.5560 0.6498 0.0006 5 6 4.7692 1.4844 0.0003 6 8 4.6732 2.6969 -0.0001 7 7 5.9859 0.9046 0.0004 8 6 7.1928 1.7351 0.0007 9 6 7.2230 2.6431 -1.2304 10 6 8.4691 0.8551 0.0653 11 6 8.5807 0.5801 1.5856 12 7 8.1501 1.8348 2.2287 13 6 8.5002 2.2481 3.4864 14 1 8.1303 3.1881 3.8685 15 6 9.3309 1.4590 4.2701 16 7 9.7823 0.3139 3.8041 17 14 9.8079 2.0224 5.9860 18 1 9.1728 3.3342 6.2708 19 1 9.3453 1.0225 6.9818 20 1 11.2843 2.1581 6.0699 21 6 7.2818 2.5686 1.2964 22 7 3.5170 -0.7100 -0.0046 23 6 2.2692 -1.0987 0.0005 24 8 1.8451 -2.3852 0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.9500 2.1318 -0.0004 29 1 6.0624 -0.0622 0.0011 30 1 8.1417 3.2298 -1.2267 31 1 6.3638 3.3133 -1.2086 32 1 7.1852 2.0330 -2.1329 33 1 8.3327 -0.0725 -0.4906 34 1 9.3394 1.4018 -0.2978 35 1 9.6116 0.3502 1.8549 36 1 7.9224 -0.2394 1.8739 37 1 10.3631 -0.2374 4.3517 38 1 7.7129 3.5459 1.0794 39 1 6.2884 2.6894 1.7284 40 1 1.7222 -2.7589 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046591052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:39 Heat of formation + Delta-G solvation = 26.271844 kcal Electronic energy + Delta-G solvation = -24028.239548 eV Core-core repulsion = 20459.945087 eV Total energy + Delta-G solvation = -3568.294461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29748 -39.55653 -37.61716 -36.98629 -34.41312 -33.83200 -31.70363 -29.97408 -29.15255 -28.53770 -27.40602 -25.56962 -23.89799 -23.06786 -21.62821 -20.45550 -20.11195 -18.81686 -18.66585 -17.55457 -16.77398 -16.38871 -15.77364 -15.43265 -14.74962 -14.60863 -14.45860 -14.42900 -13.84363 -13.60739 -13.21769 -12.95134 -12.90622 -12.60358 -12.15510 -12.11198 -11.86459 -11.62002 -11.43508 -10.84285 -10.80014 -10.42308 -10.28393 -10.22538 -9.99005 -9.96753 -9.86928 -9.57506 -9.26338 -8.68994 -8.55141 -8.40018 -6.69787 -5.54850 -2.94901 1.45087 2.01752 2.24124 3.35792 3.46948 3.52330 3.55118 3.69517 3.85403 4.34583 4.49131 4.58781 4.67108 4.96957 5.03497 5.25633 5.38865 5.50905 5.61858 5.68005 5.69673 5.86338 6.10143 6.19768 6.29490 6.31717 6.35994 6.49744 6.58832 6.64224 6.84233 6.94531 7.25865 7.29920 7.53388 7.60576 7.74220 7.93205 8.09240 8.46209 8.67741 9.33595 9.94543 10.60138 11.49466 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.004040 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.101932 B = 6928.841221 C = 7478.271477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.466 5.466 3 C 0.038 3.962 4 C -0.037 4.037 5 C 0.604 3.396 6 O -0.542 6.542 7 N -0.690 5.690 8 C 0.158 3.842 9 C -0.149 4.149 10 C -0.146 4.146 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.215 4.215 14 H 0.077 0.923 15 C -0.014 4.014 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.137 3.863 22 N -0.451 5.451 23 C 0.374 3.626 24 O -0.439 6.439 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.195 0.805 29 H 0.406 0.594 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.012 0.988 37 H 0.250 0.750 38 H 0.030 0.970 39 H 0.032 0.968 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.113 -2.889 -13.470 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.161 5.161 3 C -0.099 4.099 4 C -0.167 4.167 5 C 0.389 3.611 6 O -0.420 6.420 7 N -0.340 5.340 8 C 0.072 3.928 9 C -0.208 4.208 10 C -0.185 4.185 11 C 0.027 3.973 12 N -0.330 5.330 13 C -0.344 4.344 14 H 0.095 0.905 15 C -0.209 4.209 16 N -0.573 5.573 17 Si 0.744 3.256 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.011 3.989 22 N -0.181 5.181 23 C 0.073 3.927 24 O -0.239 6.239 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.212 0.788 29 H 0.241 0.759 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -17.487 -2.673 -12.675 21.762 hybrid contribution -0.755 -0.079 0.511 0.915 sum -18.241 -2.752 -12.164 22.097 Atomic orbital electron populations 1.22116 0.75959 1.05411 1.03830 1.45802 1.08250 1.06598 1.55460 1.22643 0.89747 0.92375 1.05099 1.20609 0.93835 0.89371 1.12844 1.16726 0.81788 0.86308 0.76289 1.90757 1.86693 1.13038 1.51499 1.45782 1.04579 1.10648 1.72975 1.21377 0.84040 0.91611 0.95748 1.22047 1.03017 0.99683 0.96032 1.23342 0.95258 0.98282 1.01588 1.21935 1.02847 0.87608 0.84879 1.44515 1.54885 1.20088 1.13559 1.19145 1.23123 1.03012 0.89079 0.90522 1.24752 1.00550 0.96855 0.98717 1.69795 1.38651 1.12898 1.35979 0.86009 0.77884 0.77631 0.84089 1.20582 1.21900 1.21817 1.21599 0.94709 0.93867 0.88743 1.70891 1.16689 1.11254 1.19264 1.20280 0.84163 0.81431 1.06851 1.84917 1.86760 1.18228 1.33992 0.90213 0.88979 0.89025 0.78766 0.75895 0.91804 0.90796 0.93190 0.91837 0.90530 0.87495 0.97021 0.93932 0.95191 0.94962 0.74364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.11 59.84 0.66 0.99 16 2 N -0.47 -4.58 3.16 -125.78 -0.40 -4.97 16 3 C 0.04 0.46 11.29 -16.26 -0.18 0.27 16 4 C -0.04 -0.59 6.97 -83.06 -0.58 -1.17 16 5 C 0.60 11.00 7.02 -12.60 -0.09 10.91 16 6 O -0.54 -10.77 13.85 5.25 0.07 -10.70 16 7 N -0.69 -12.68 5.15 -47.02 -0.24 -12.92 16 8 C 0.16 3.06 0.81 -129.98 -0.11 2.95 16 9 C -0.15 -2.49 8.36 37.16 0.31 -2.18 16 10 C -0.15 -2.84 6.09 -24.58 -0.15 -2.99 16 11 C 0.15 3.82 5.87 -2.53 -0.01 3.81 16 12 N -0.60 -16.43 3.39 -170.08 -0.58 -17.01 16 13 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 14 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 15 C -0.01 -0.41 5.49 -17.44 -0.10 -0.50 16 16 N -0.92 -27.74 10.09 55.49 0.56 -27.18 16 17 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C 0.14 3.23 6.16 -3.06 -0.02 3.22 16 22 N -0.45 -6.95 11.03 -11.22 -0.12 -7.08 16 23 C 0.37 4.53 9.03 -89.18 -0.81 3.73 16 24 O -0.44 -4.05 13.55 -18.07 -0.24 -4.29 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.41 7.19 8.20 -40.82 -0.33 6.85 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 31 H 0.07 1.30 6.26 -51.93 -0.33 0.98 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 34 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 39 H 0.03 0.82 6.68 -51.93 -0.35 0.48 16 40 H 0.40 1.46 9.06 45.56 0.41 1.87 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -36.74 332.58 -6.83 -43.57 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.64 Total: 5.07 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -1.22 Total: 12.56 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -0.78 Total: -69.16 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.17 Total: -14.99 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.74 -6.83 -43.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046591052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.839 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds