Wall clock time and date at job start Tue Mar 31 2020 04:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35373 * 126.38722 * 2 1 4 4 C 1.41499 * 105.50011 * 180.15410 * 3 2 1 5 5 C 1.47717 * 126.51376 * 179.89916 * 4 3 2 6 6 O 1.21571 * 119.99705 * 6.34334 * 5 4 3 7 7 N 1.34776 * 120.00044 * 186.34258 * 5 4 3 8 8 C 1.46498 * 119.99543 * 5.45698 * 7 5 4 9 9 C 1.46496 * 120.00152 * 185.45486 * 7 5 4 10 10 H 1.09003 * 110.64182 * 358.31506 * 9 7 5 11 11 C 1.54325 * 110.71809 * 121.45224 * 9 7 5 12 12 N 1.47025 * 107.26762 * 140.73520 * 11 9 7 13 13 C 1.36938 * 125.64848 * 181.01945 * 12 11 9 14 14 H 1.08007 * 119.99684 * 13.91409 * 13 12 11 15 15 C 1.38805 * 120.00313 * 193.91148 * 13 12 11 16 16 N 1.31624 * 120.00081 * 28.08910 * 15 13 12 17 17 Si 1.86800 * 120.00056 * 208.09508 * 15 13 12 18 18 H 1.48504 * 109.47363 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47254 * 59.99642 * 17 15 13 20 20 H 1.48502 * 109.46750 * 299.99738 * 17 15 13 21 21 C 1.47423 * 108.70411 * 1.28916 * 12 11 9 22 22 C 1.55130 * 104.72317 * 335.55178 * 21 12 11 23 23 H 1.09001 * 111.19248 * 279.19794 * 22 21 12 24 24 O 1.42896 * 110.94193 * 155.28829 * 22 21 12 25 25 N 1.31801 * 106.96847 * 359.63859 * 4 3 2 26 26 N 1.28469 * 110.07359 * 0.22850 * 25 4 3 27 27 H 0.96999 * 124.89015 * 180.02562 * 26 25 4 28 28 H 1.09001 * 109.47011 * 270.27056 * 1 2 3 29 29 H 1.09002 * 109.47157 * 30.26388 * 1 2 3 30 30 H 1.08998 * 109.46773 * 150.26358 * 1 2 3 31 31 H 1.07996 * 127.24371 * 0.03882 * 3 2 1 32 32 H 1.09001 * 109.47207 * 274.76802 * 8 7 5 33 33 H 1.08993 * 109.47786 * 34.77203 * 8 7 5 34 34 H 1.09001 * 109.46720 * 154.77563 * 8 7 5 35 35 H 1.08994 * 109.88615 * 21.32039 * 11 9 7 36 36 H 1.09001 * 110.01334 * 260.22350 * 11 9 7 37 37 H 0.96996 * 119.99306 * 6.16441 * 16 15 13 38 38 H 1.09000 * 110.37072 * 94.48365 * 21 12 11 39 39 H 1.09000 * 110.36394 * 216.80460 * 21 12 11 40 40 H 0.96709 * 113.99686 * 67.95734 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0898 0.0000 4 6 3.6321 0.5853 -0.0037 5 6 4.8765 1.3811 -0.0072 6 8 4.8251 2.5902 0.1092 7 7 6.0689 0.7669 -0.1394 8 6 6.1258 -0.6737 -0.3993 9 6 7.3079 1.5398 -0.0234 10 1 7.0887 2.5951 0.1397 11 6 8.1935 0.9844 1.1119 12 7 9.5868 1.0406 0.6457 13 6 10.6822 0.6204 1.3518 14 1 10.5548 0.0066 2.2314 15 6 11.9563 0.9830 0.9373 16 7 12.1378 2.1045 0.2726 17 14 13.4134 -0.1206 1.3225 18 1 14.6530 0.4872 0.7756 19 1 13.2012 -1.4542 0.7049 20 1 13.5443 -0.2716 2.7940 21 6 9.6099 1.6303 -0.7053 22 6 8.1966 1.3518 -1.2812 23 1 8.1208 0.3343 -1.6645 24 8 7.8606 2.3037 -2.2927 25 7 3.5420 -0.7296 0.0024 26 7 2.3081 -1.0871 0.0046 27 1 1.9965 -2.0057 0.0092 28 1 -0.3633 0.0049 1.0277 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5097 31 1 2.0057 2.1260 0.0006 32 1 6.0730 -1.2156 0.5450 33 1 5.2860 -0.9625 -1.0312 34 1 7.0608 -0.9150 -0.9048 35 1 7.9162 -0.0473 1.3275 36 1 8.0776 1.5943 2.0078 37 1 11.3986 2.7205 0.1499 38 1 9.7941 2.7031 -0.6479 39 1 10.3707 1.1462 -1.3175 40 1 8.3900 2.2251 -3.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047315577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:13 Heat of formation + Delta-G solvation = 4.421044 kcal Electronic energy + Delta-G solvation = -24057.302265 eV Core-core repulsion = 20488.060282 eV Total energy + Delta-G solvation = -3569.241983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.73073 -41.22252 -39.49181 -36.93697 -36.54731 -34.19802 -33.50764 -32.85320 -30.35833 -29.35931 -27.95789 -27.85144 -26.42085 -24.90900 -22.42156 -22.24246 -21.70463 -20.20626 -19.69571 -18.98435 -18.46314 -17.62869 -17.41860 -17.02632 -16.28231 -15.94573 -15.89640 -15.48471 -15.37051 -14.83310 -14.71625 -14.41309 -14.08585 -14.02180 -13.82299 -13.72050 -13.49249 -13.30811 -13.09583 -12.95368 -12.62528 -12.51305 -11.90100 -11.88788 -11.74922 -11.69782 -11.35204 -11.06727 -10.58102 -10.47115 -9.93377 -9.77535 -9.14643 -8.37873 -5.39668 0.42765 1.09192 1.58354 1.61819 1.67285 1.86493 2.08698 2.21855 2.60820 2.89542 3.16018 3.23932 3.46161 3.64496 3.75897 3.80713 3.89619 3.98232 4.17094 4.25638 4.30343 4.44089 4.58619 4.62729 4.69197 4.78739 4.81718 4.89244 4.93341 5.00959 5.03174 5.12082 5.28978 5.40264 5.57961 6.07926 6.22509 6.25653 6.71398 6.76368 6.79344 7.00405 7.62016 8.15835 8.93928 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031578 B = 0.003527 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.479434 B = 7935.793301 C = 8352.409287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.207 4.207 4 C -0.033 4.033 5 C 0.594 3.406 6 O -0.574 6.574 7 N -0.588 5.588 8 C 0.085 3.915 9 C 0.148 3.852 10 H 0.086 0.914 11 C 0.135 3.865 12 N -0.616 5.616 13 C -0.350 4.350 14 H 0.068 0.932 15 C -0.076 4.076 16 N -0.944 5.944 17 Si 1.121 2.879 18 H -0.292 1.292 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.128 3.872 22 C 0.096 3.904 23 H 0.091 0.909 24 O -0.566 6.566 25 N -0.258 5.258 26 N -0.363 5.363 27 H 0.463 0.537 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.254 0.746 38 H 0.009 0.991 39 H 0.041 0.959 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.310 -11.080 -4.166 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.235 4.235 4 C -0.191 4.191 5 C 0.383 3.617 6 O -0.452 6.452 7 N -0.319 5.319 8 C -0.056 4.056 9 C 0.043 3.957 10 H 0.104 0.896 11 C 0.008 3.992 12 N -0.345 5.345 13 C -0.478 4.478 14 H 0.086 0.914 15 C -0.272 4.272 16 N -0.587 5.587 17 Si 0.944 3.056 18 H -0.218 1.218 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.001 3.999 22 C 0.035 3.965 23 H 0.109 0.891 24 O -0.373 6.373 25 N -0.096 5.096 26 N -0.081 5.081 27 H 0.312 0.688 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.177 0.823 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -22.417 -11.445 -3.832 25.459 hybrid contribution -1.309 0.974 0.111 1.635 sum -23.725 -10.471 -3.721 26.199 Atomic orbital electron populations 1.20548 0.83048 1.05660 1.04814 1.21935 0.97037 0.85769 1.04127 1.21707 0.90097 1.00991 1.10691 1.21527 0.94376 0.90602 1.12640 1.17478 0.82513 0.86101 0.75656 1.90748 1.86985 1.15115 1.52354 1.47597 1.04099 1.10528 1.69652 1.22062 1.03607 0.77494 1.02464 1.21706 0.83306 0.96455 0.94188 0.89611 1.21604 0.84326 0.98932 0.94294 1.44619 1.01891 1.74162 1.13833 1.20076 0.86191 1.28856 1.12675 0.91372 1.27286 1.01471 0.98923 0.99517 1.70911 1.33980 1.08162 1.45628 0.82797 0.72284 0.73965 0.76538 1.21801 1.20048 1.20103 1.22079 0.95350 0.95583 0.86851 1.23255 0.92593 0.92669 0.87975 0.89132 1.86472 1.63887 1.58108 1.28882 1.73689 1.02727 1.13755 1.19426 1.43539 1.02213 1.10727 1.51655 0.68828 0.88812 0.88785 0.88439 0.82333 0.91528 0.88469 0.90832 0.92960 0.96597 0.93523 0.97370 0.94045 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 71.24 0.74 0.37 16 2 C 0.04 0.54 7.23 41.40 0.30 0.83 16 3 C -0.21 -4.79 10.73 22.41 0.24 -4.55 16 4 C -0.03 -0.94 6.74 42.46 0.29 -0.66 16 5 C 0.59 21.96 7.67 86.75 0.67 22.63 16 6 O -0.57 -25.42 16.31 -3.94 -0.06 -25.49 16 7 N -0.59 -20.72 2.89 -819.52 -2.36 -23.08 16 8 C 0.09 2.35 8.09 127.77 1.03 3.38 16 9 C 0.15 6.14 3.08 46.18 0.14 6.28 16 10 H 0.09 4.06 7.00 -2.39 -0.02 4.05 16 11 C 0.13 6.11 6.88 86.73 0.60 6.71 16 12 N -0.62 -32.61 3.32 -691.54 -2.30 -34.91 16 13 C -0.35 -20.16 10.04 84.03 0.84 -19.32 16 14 H 0.07 3.85 7.97 -2.91 -0.02 3.83 16 15 C -0.08 -4.42 5.08 84.86 0.43 -3.99 16 16 N -0.94 -58.94 12.83 21.65 0.28 -58.66 16 17 Si 1.12 50.94 30.00 68.60 2.06 53.00 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.13 6.27 4.98 86.93 0.43 6.70 16 22 C 0.10 3.77 3.96 32.06 0.13 3.89 16 23 H 0.09 3.16 6.16 -2.39 -0.01 3.15 16 24 O -0.57 -20.76 13.47 -148.98 -2.01 -22.77 16 25 N -0.26 -5.80 9.02 -48.18 -0.43 -6.23 16 26 N -0.36 -4.98 6.83 -47.92 -0.33 -5.31 16 27 H 0.46 2.23 8.96 -219.99 -1.97 0.26 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 33 H 0.10 2.37 5.93 -2.39 -0.01 2.35 16 34 H 0.07 1.99 6.14 -2.39 -0.01 1.98 16 35 H 0.05 2.21 7.05 -2.39 -0.02 2.19 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.25 16.32 5.94 -92.71 -0.55 15.76 16 38 H 0.01 0.47 6.85 -2.39 -0.02 0.45 16 39 H 0.04 2.14 7.77 -2.39 -0.02 2.12 16 40 H 0.40 10.58 9.12 -74.05 -0.68 9.91 16 Total: -1.00 -82.42 328.47 -0.65 -83.07 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -1.33 Total: 18.09 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 5.84 Total: 22.29 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.15 Total: -128.19 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -2.07 Total: -48.26 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.06 Total: 53.00 kcal Total: -82.42 -0.65 -83.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047315577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.495 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds