Wall clock time and date at job start Tue Mar 31 2020 04:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35367 * 126.38656 * 2 1 4 4 C 1.41503 * 105.50686 * 180.02562 * 3 2 1 5 5 C 1.47710 * 126.52076 * 179.97438 * 4 3 2 6 6 O 1.21575 * 119.99890 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99811 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99578 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46993 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.68113 * 300.77565 * 9 8 7 11 11 C 1.53297 * 109.68179 * 180.25925 * 9 8 7 12 12 O 1.42963 * 109.22324 * 187.97866 * 11 9 8 13 13 C 1.42966 * 114.16650 * 62.57686 * 12 11 9 14 14 C 1.53293 * 109.22142 * 297.42046 * 13 12 11 15 15 N 1.47155 * 109.67849 * 61.29429 * 9 8 7 16 16 C 1.36936 * 120.98351 * 350.23403 * 15 9 8 17 17 H 1.07999 * 119.99977 * 31.05518 * 16 15 9 18 18 C 1.38811 * 119.99867 * 211.06091 * 16 15 9 19 19 N 1.31614 * 120.00025 * 10.77062 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 190.77508 * 18 16 15 21 21 H 1.48506 * 109.47243 * 89.99629 * 20 18 16 22 22 H 1.48501 * 109.47525 * 209.99893 * 20 18 16 23 23 H 1.48503 * 109.46963 * 329.99998 * 20 18 16 24 24 N 1.31806 * 106.96010 * 0.24785 * 4 3 2 25 25 N 1.28473 * 110.07554 * 359.58553 * 24 4 3 26 26 H 0.96999 * 124.88290 * 180.13156 * 25 24 4 27 27 H 1.09001 * 109.46655 * 89.99517 * 1 2 3 28 28 H 1.08997 * 109.46903 * 210.00056 * 1 2 3 29 29 H 1.08998 * 109.46949 * 329.99570 * 1 2 3 30 30 H 1.08001 * 127.24995 * 0.04844 * 3 2 1 31 31 H 0.96994 * 120.00572 * 0.02562 * 7 5 4 32 32 H 1.09006 * 109.47240 * 60.00023 * 8 7 5 33 33 H 1.08996 * 109.47466 * 299.99878 * 8 7 5 34 34 H 1.09006 * 109.50813 * 307.89894 * 11 9 8 35 35 H 1.08997 * 109.51442 * 68.00199 * 11 9 8 36 36 H 1.08997 * 109.51302 * 57.34565 * 13 12 11 37 37 H 1.08995 * 109.50796 * 177.50026 * 13 12 11 38 38 H 1.09007 * 109.68056 * 172.02683 * 14 13 12 39 39 H 1.08999 * 109.68268 * 292.57598 * 14 13 12 40 40 H 0.97000 * 119.99971 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6322 0.5854 -0.0006 5 6 4.8766 1.3812 -0.0014 6 8 4.8214 2.5957 -0.0011 7 7 6.0731 0.7609 -0.0024 8 6 7.3073 1.5503 -0.0038 9 6 8.5141 0.6098 -0.0041 10 1 8.4815 -0.0295 0.8781 11 6 9.8086 1.4310 0.0010 12 8 10.9226 0.5549 -0.1867 13 6 10.9209 -0.1338 -1.4395 14 6 9.6834 -1.0351 -1.5183 15 7 8.4950 -0.2204 -1.2190 16 6 7.4040 -0.2340 -2.0464 17 1 6.7899 0.6489 -2.1448 18 6 7.0874 -1.3826 -2.7587 19 7 7.6983 -2.5158 -2.4852 20 14 5.7945 -1.3198 -4.1054 21 1 6.4442 -0.9947 -5.4007 22 1 5.1209 -2.6394 -4.2069 23 1 4.7905 -0.2753 -3.7794 24 7 3.5421 -0.7295 -0.0064 25 7 2.3081 -1.0871 -0.0006 26 1 1.9967 -2.0057 -0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 2.0058 2.1260 0.0007 31 1 6.1171 -0.2080 -0.0031 32 1 7.3374 2.1791 0.8861 33 1 7.3357 2.1788 -0.8938 34 1 9.7795 2.1614 -0.8076 35 1 9.9079 1.9481 0.9554 36 1 10.8959 0.5908 -2.2533 37 1 11.8209 -0.7432 -1.5211 38 1 9.5979 -1.4545 -2.5209 39 1 9.7689 -1.8406 -0.7890 40 1 7.4773 -3.3184 -2.9832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050827413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:25 Heat of formation + Delta-G solvation = -2.474878 kcal Electronic energy + Delta-G solvation = -24493.302015 eV Core-core repulsion = 20923.761003 eV Total energy + Delta-G solvation = -3569.541012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.64051 -40.69473 -39.75124 -36.94120 -35.32957 -33.83412 -33.22109 -32.77467 -32.03153 -29.03201 -27.99582 -27.28465 -25.26363 -24.68369 -23.12681 -22.19981 -21.43904 -20.83569 -18.73293 -18.62798 -17.69705 -17.53660 -17.22752 -16.81651 -16.37741 -16.25708 -16.02912 -15.45382 -15.25642 -15.07236 -14.78267 -14.68389 -14.34451 -13.97522 -13.73990 -13.52554 -13.13189 -13.06717 -12.92258 -12.76670 -12.51692 -12.17288 -12.00904 -11.86533 -11.79282 -11.35550 -11.20488 -10.66235 -10.56856 -10.45658 -9.91909 -9.85134 -8.62075 -7.88352 -5.37943 0.56736 1.14363 1.35375 1.38219 1.45549 1.93707 2.32838 2.43478 2.47634 3.04393 3.28270 3.42918 3.50274 3.82382 4.01920 4.10399 4.23057 4.32431 4.47800 4.49504 4.61438 4.62558 4.64966 4.67080 4.76307 4.79749 5.01457 5.03891 5.10690 5.11688 5.30221 5.37973 5.52096 5.63631 5.68351 6.15375 6.30184 6.37319 6.58052 6.92255 7.11172 7.24307 7.76145 8.31617 9.16355 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.005655 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.552827 B = 4949.988483 C = 6095.169836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 C -0.206 4.206 4 C -0.036 4.036 5 C 0.591 3.409 6 O -0.580 6.580 7 N -0.684 5.684 8 C 0.139 3.861 9 C 0.125 3.875 10 H 0.035 0.965 11 C 0.059 3.941 12 O -0.397 6.397 13 C 0.047 3.953 14 C 0.149 3.851 15 N -0.605 5.605 16 C -0.237 4.237 17 H 0.064 0.936 18 C -0.028 4.028 19 N -0.925 5.925 20 Si 0.945 3.055 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.287 1.287 24 N -0.278 5.278 25 N -0.371 5.371 26 H 0.458 0.542 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.005 0.995 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 3.227 5.828 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.234 4.234 4 C -0.196 4.196 5 C 0.376 3.624 6 O -0.460 6.460 7 N -0.333 5.333 8 C 0.015 3.985 9 C 0.018 3.982 10 H 0.053 0.947 11 C -0.019 4.019 12 O -0.315 6.315 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.331 5.331 16 C -0.368 4.368 17 H 0.082 0.918 18 C -0.225 4.225 19 N -0.570 5.570 20 Si 0.775 3.225 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.213 1.213 24 N -0.115 5.115 25 N -0.088 5.088 26 H 0.306 0.694 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.185 0.815 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.024 0.976 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.174 2.967 5.892 11.299 hybrid contribution -1.227 -0.621 -1.234 1.847 sum -10.400 2.346 4.658 11.635 Atomic orbital electron populations 1.20540 0.82725 1.05793 1.04691 1.22086 0.97227 0.85796 1.04474 1.21742 0.89808 1.00973 1.10926 1.21975 0.95670 0.90332 1.11599 1.17208 0.82624 0.86228 0.76322 1.90682 1.87595 1.13866 1.53888 1.45940 1.04691 1.11645 1.71042 1.21241 0.82410 0.93284 1.01595 1.21580 0.94109 0.92524 0.89946 0.94734 1.22977 0.85136 0.91110 1.02700 1.87803 1.45214 1.60282 1.38207 1.23212 0.99374 0.95270 0.85230 1.21253 0.84904 0.91476 0.99989 1.44301 1.14260 1.51421 1.23133 1.19198 1.04106 0.95050 1.18402 0.91817 1.25525 0.99820 0.94970 1.02158 1.70087 1.45453 0.99152 1.42350 0.85618 0.80015 0.76217 0.80645 1.21418 1.21909 1.21264 1.73649 1.03264 1.15044 1.19505 1.43473 1.02186 1.10736 1.52421 0.69421 0.89069 0.88645 0.88119 0.81470 0.74927 0.89560 0.92662 0.92998 0.86207 0.93700 0.87665 0.91563 0.97644 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.44 71.24 0.74 -0.13 16 2 C 0.03 0.69 7.23 41.40 0.30 0.99 16 3 C -0.21 -6.25 10.73 22.41 0.24 -6.01 16 4 C -0.04 -1.36 7.13 42.46 0.30 -1.06 16 5 C 0.59 25.11 7.82 86.75 0.68 25.79 16 6 O -0.58 -26.35 16.93 -3.95 -0.07 -26.42 16 7 N -0.68 -28.82 3.80 -466.09 -1.77 -30.59 16 8 C 0.14 5.34 4.44 86.38 0.38 5.72 16 9 C 0.12 4.97 3.20 44.97 0.14 5.12 16 10 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 11 C 0.06 2.01 6.29 72.08 0.45 2.46 16 12 O -0.40 -14.81 10.74 -148.98 -1.60 -16.41 16 13 C 0.05 1.77 6.99 72.08 0.50 2.28 16 14 C 0.15 6.99 5.38 86.35 0.46 7.46 16 15 N -0.61 -28.93 3.03 -673.68 -2.04 -30.97 16 16 C -0.24 -12.39 7.11 84.03 0.60 -11.80 16 17 H 0.06 3.44 5.81 -2.91 -0.02 3.42 16 18 C -0.03 -1.52 5.06 84.86 0.43 -1.09 16 19 N -0.92 -52.36 11.13 21.65 0.24 -52.11 16 20 Si 0.94 45.71 29.57 68.60 2.03 47.74 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 N -0.28 -10.01 11.92 -48.18 -0.57 -10.59 16 25 N -0.37 -9.44 6.83 -47.93 -0.33 -9.77 16 26 H 0.46 7.89 8.96 -219.99 -1.97 5.92 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.41 18.86 7.10 -92.71 -0.66 18.20 16 32 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.06 2.29 7.53 -2.39 -0.02 2.27 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 35 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.07 3.45 6.33 -2.38 -0.02 3.43 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -71.12 330.58 -0.42 -71.55 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -1.55 Total: 27.84 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 5.24 Total: 29.73 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -4.48 Total: -134.03 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.67 Total: -42.83 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.12 -0.42 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050827413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.072 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds