Wall clock time and date at job start Tue Mar 31 2020 03:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30443 * 125.99272 * 2 1 4 4 N 1.39928 * 108.90158 * 180.25620 * 3 2 1 5 5 H 0.96999 * 125.75881 * 179.77760 * 4 3 2 6 6 C 1.34259 * 108.49099 * 359.75353 * 4 3 2 7 7 C 1.38048 * 107.41717 * 359.97438 * 6 4 3 8 8 C 1.47426 * 126.41349 * 179.97438 * 7 6 4 9 9 O 1.21602 * 119.99727 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00172 * 0.02695 * 8 7 6 11 11 C 1.46505 * 119.99783 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46783 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.67967 * 300.07971 * 12 11 10 14 14 C 1.53300 * 109.68070 * 179.52795 * 12 11 10 15 15 O 1.42958 * 109.22410 * 187.97476 * 14 12 11 16 16 C 1.42961 * 114.16663 * 62.57898 * 15 14 12 17 17 C 1.53293 * 109.22480 * 297.42256 * 16 15 14 18 18 N 1.47144 * 108.38533 * 52.29769 * 17 16 15 19 19 C 1.36944 * 120.98300 * 129.49053 * 18 17 16 20 20 H 1.08001 * 119.99662 * 211.18692 * 19 18 17 21 21 C 1.38814 * 119.99621 * 31.17540 * 19 18 17 22 22 N 1.31614 * 119.99960 * 10.75070 * 21 19 18 23 23 Si 1.86804 * 119.99804 * 190.74291 * 21 19 18 24 24 H 1.48500 * 109.46990 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46925 * 120.00367 * 23 21 19 26 26 H 1.48494 * 109.47156 * 240.00749 * 23 21 19 27 27 H 1.08998 * 109.47449 * 270.14571 * 1 2 3 28 28 H 1.09001 * 109.46965 * 30.14936 * 1 2 3 29 29 H 1.09002 * 109.47032 * 150.14501 * 1 2 3 30 30 H 1.08004 * 126.29621 * 180.02562 * 6 4 3 31 31 H 0.96996 * 120.00278 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47195 * 60.00230 * 11 10 8 33 33 H 1.08995 * 109.47224 * 300.00420 * 11 10 8 34 34 H 1.08993 * 109.51434 * 307.90233 * 14 12 11 35 35 H 1.09002 * 109.51207 * 68.05081 * 14 12 11 36 36 H 1.09005 * 109.51410 * 177.49370 * 16 15 14 37 37 H 1.08998 * 109.54969 * 57.37027 * 16 15 14 38 38 H 1.09006 * 109.68053 * 292.57529 * 17 16 15 39 39 H 1.09000 * 109.71246 * 172.04719 * 17 16 15 40 40 H 0.97002 * 119.99851 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 -0.0059 5 1 4.3842 1.2300 -0.0102 6 6 3.6439 -0.6980 -0.0041 7 6 2.3372 -1.1433 0.0035 8 6 1.8915 -2.5486 0.0075 9 8 0.7039 -2.8097 0.0138 10 7 2.8004 -3.5438 0.0041 11 6 2.3574 -4.9403 0.0086 12 6 3.5782 -5.8625 0.0041 13 1 4.1768 -5.6747 -0.8873 14 6 3.1202 -7.3254 0.0207 15 8 4.2571 -8.1725 0.2037 16 6 4.9372 -7.9789 1.4462 17 6 5.4883 -6.5496 1.5026 18 7 4.3895 -5.6166 1.2068 19 6 4.1300 -4.5506 2.0264 20 1 3.1190 -4.1865 2.1348 21 6 5.1663 -3.9383 2.7178 22 7 6.4156 -4.2366 2.4306 23 14 4.7876 -2.6909 4.0557 24 1 3.3165 -2.5342 4.1843 25 1 5.3494 -3.1636 5.3465 26 1 5.3959 -1.3837 3.7002 27 1 -0.3634 0.0026 1.0276 28 1 -0.3633 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5116 30 1 4.5297 -1.3159 -0.0071 31 1 3.7477 -3.3355 -0.0013 32 1 1.7530 -5.1326 -0.8779 33 1 1.7625 -5.1299 0.9020 34 1 2.4172 -7.4775 0.8396 35 1 2.6355 -7.5658 -0.9256 36 1 5.7599 -8.6897 1.5255 37 1 4.2415 -8.1338 2.2708 38 1 6.2795 -6.4316 0.7622 39 1 5.8840 -6.3472 2.4979 40 1 7.1398 -3.8084 2.9135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051053197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:53 Heat of formation + Delta-G solvation = -2.647564 kcal Electronic energy + Delta-G solvation = -24723.590040 eV Core-core repulsion = 21154.041540 eV Total energy + Delta-G solvation = -3569.548501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38043 -40.50535 -39.57577 -36.88203 -35.26464 -33.93411 -33.33421 -32.25791 -31.11250 -29.02090 -28.86475 -26.91725 -25.20531 -24.09413 -23.16223 -21.37762 -21.33246 -20.63296 -19.49290 -18.42373 -17.53650 -17.34452 -17.01377 -16.34131 -16.25152 -16.17185 -15.85553 -15.38740 -15.22876 -15.00459 -14.93519 -14.55620 -14.21617 -13.89578 -13.71259 -13.45720 -13.07234 -12.94812 -12.89461 -12.73247 -12.43820 -12.12875 -12.00735 -11.95292 -11.82098 -11.26678 -10.88396 -10.58509 -10.52932 -10.50799 -9.99579 -9.59309 -8.58289 -7.84577 -5.34674 0.54062 1.11389 1.36734 1.46050 1.53240 1.78515 2.40601 2.49477 2.59729 3.08003 3.31141 3.48038 3.53823 3.78443 4.09484 4.20869 4.25480 4.32923 4.44737 4.50908 4.53606 4.66412 4.69339 4.72176 4.79067 4.82197 4.92909 5.02429 5.05541 5.16824 5.35700 5.49703 5.64264 5.70548 5.75168 6.21688 6.33482 6.40941 6.49691 6.84330 7.14482 7.46207 7.79596 8.35953 9.19476 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.006158 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.774312 B = 4546.198690 C = 5722.972812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.119 3.881 3 N -0.320 5.320 4 N -0.449 5.449 5 H 0.459 0.541 6 C 0.127 3.873 7 C -0.313 4.313 8 C 0.586 3.414 9 O -0.588 6.588 10 N -0.694 5.694 11 C 0.144 3.856 12 C 0.127 3.873 13 H 0.040 0.960 14 C 0.057 3.943 15 O -0.398 6.398 16 C 0.045 3.955 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.024 4.024 22 N -0.923 5.923 23 Si 0.936 3.064 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.285 1.285 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.206 0.794 31 H 0.410 0.590 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.066 0.934 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 2.963 -5.935 7.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 N -0.144 5.144 4 N -0.155 5.155 5 H 0.306 0.694 6 C -0.028 4.028 7 C -0.327 4.327 8 C 0.375 3.625 9 O -0.471 6.471 10 N -0.344 5.344 11 C 0.019 3.981 12 C 0.020 3.980 13 H 0.058 0.942 14 C -0.022 4.022 15 O -0.316 6.316 16 C -0.033 4.033 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.365 4.365 20 H 0.085 0.915 21 C -0.221 4.221 22 N -0.569 5.569 23 Si 0.766 3.234 24 H -0.211 1.211 25 H -0.225 1.225 26 H -0.212 1.212 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.222 0.778 31 H 0.247 0.753 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.084 0.916 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.282 3.976 -5.998 8.374 hybrid contribution 1.168 0.379 1.355 1.828 sum -3.115 4.355 -4.642 7.087 Atomic orbital electron populations 1.20320 0.84799 1.04205 1.03727 1.22781 0.98268 0.88738 0.95104 1.77025 0.87196 1.22576 1.27555 1.46079 1.07682 1.05493 1.56282 0.69351 1.23536 0.99308 0.85925 0.94003 1.20382 0.93252 0.94300 1.24810 1.17419 0.85258 0.84285 0.75579 1.90646 1.17420 1.84968 1.54071 1.45812 1.10192 1.05448 1.72941 1.21097 0.95573 0.80255 1.01127 1.21557 0.91855 0.94372 0.90178 0.94203 1.22996 0.87472 0.89255 1.02458 1.87806 1.44111 1.60657 1.39073 1.23216 0.96413 0.98229 0.85403 1.21242 0.89325 0.87047 1.00047 1.44282 1.35681 1.28531 1.24457 1.19306 0.92178 1.05981 1.19031 0.91490 1.25441 0.95267 0.99625 1.01783 1.70085 0.98103 1.45932 1.42758 0.85699 0.77022 0.80113 0.80539 1.21124 1.22518 1.21190 0.90125 0.89274 0.89688 0.77761 0.75320 0.90127 0.93278 0.93353 0.86443 0.87898 0.93972 0.97276 0.91602 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 9.92 71.24 0.71 -1.25 16 2 C 0.12 3.76 7.26 43.52 0.32 4.08 16 3 N -0.32 -9.51 12.63 -46.68 -0.59 -10.10 16 4 N -0.45 -11.03 7.29 -56.31 -0.41 -11.45 16 5 H 0.46 7.63 8.96 -213.43 -1.91 5.71 16 6 C 0.13 3.49 11.52 84.28 0.97 4.46 16 7 C -0.31 -10.41 6.13 -20.15 -0.12 -10.53 16 8 C 0.59 21.82 7.81 86.66 0.68 22.50 16 9 O -0.59 -24.29 14.92 -4.04 -0.06 -24.35 16 10 N -0.69 -24.88 3.76 -466.38 -1.75 -26.63 16 11 C 0.14 4.98 4.45 86.38 0.38 5.37 16 12 C 0.13 4.56 3.21 44.97 0.14 4.71 16 13 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 14 C 0.06 1.80 6.29 72.08 0.45 2.25 16 15 O -0.40 -14.10 10.74 -148.98 -1.60 -15.70 16 16 C 0.05 1.62 6.98 72.08 0.50 2.12 16 17 C 0.15 6.48 5.38 86.35 0.46 6.95 16 18 N -0.60 -26.25 3.03 -673.74 -2.04 -28.29 16 19 C -0.23 -11.08 7.06 84.03 0.59 -10.49 16 20 H 0.07 3.29 5.81 -2.91 -0.02 3.28 16 21 C -0.02 -1.20 5.06 84.86 0.43 -0.77 16 22 N -0.92 -47.55 11.13 21.65 0.24 -47.31 16 23 Si 0.94 41.78 29.57 68.60 2.03 43.81 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.50 6.56 -2.39 -0.02 2.49 16 30 H 0.21 4.92 7.46 -2.91 -0.02 4.90 16 31 H 0.41 14.89 6.24 -92.71 -0.58 14.31 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 1.89 7.57 -2.39 -0.02 1.87 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 2.94 8.14 -2.39 -0.02 2.93 16 36 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.07 3.22 6.33 -2.39 -0.02 3.20 16 40 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -62.50 325.96 -0.07 -62.58 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -1.40 Total: 28.03 kcal Atomic # 6 Polarization: 23.89 SS G_CDS: 5.52 Total: 29.41 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -4.55 Total: -123.78 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.66 Total: -40.05 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -62.50 -0.07 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051053197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.928 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds