Wall clock time and date at job start Tue Mar 31 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33327 * 126.10727 * 2 1 4 4 C 1.30861 * 109.68184 * 180.27093 * 3 2 1 5 5 N 1.34492 * 109.16423 * 359.76566 * 4 3 2 6 6 H 0.97002 * 126.46890 * 180.02562 * 5 4 3 7 7 C 1.36668 * 126.10891 * 179.87125 * 2 1 3 8 8 C 1.46761 * 126.84352 * 0.02562 * 7 2 1 9 9 O 1.21681 * 120.00003 * 359.70890 * 8 7 2 10 10 N 1.34777 * 119.99934 * 179.70556 * 8 7 2 11 11 C 1.46505 * 119.99783 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46882 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.67606 * 300.07810 * 12 11 10 14 14 C 1.53297 * 109.68191 * 179.53177 * 12 11 10 15 15 O 1.42958 * 109.22379 * 187.97090 * 14 12 11 16 16 C 1.42968 * 114.16602 * 62.57802 * 15 14 12 17 17 C 1.53293 * 109.22279 * 297.42080 * 16 15 14 18 18 N 1.47144 * 108.38533 * 52.29952 * 17 16 15 19 19 C 1.36944 * 120.98300 * 129.49053 * 18 17 16 20 20 H 1.08002 * 119.99877 * 211.19247 * 19 18 17 21 21 C 1.38814 * 119.99621 * 31.17540 * 19 18 17 22 22 N 1.31614 * 119.99960 * 10.75070 * 21 19 18 23 23 Si 1.86804 * 119.99804 * 190.74291 * 21 19 18 24 24 H 1.48499 * 109.47081 * 90.00564 * 23 21 19 25 25 H 1.48498 * 109.47044 * 210.00931 * 23 21 19 26 26 H 1.48505 * 109.47055 * 330.00709 * 23 21 19 27 27 H 1.09001 * 109.46742 * 270.12432 * 1 2 3 28 28 H 1.08991 * 109.47148 * 30.12541 * 1 2 3 29 29 H 1.08995 * 109.46592 * 150.12580 * 1 2 3 30 30 H 1.08000 * 125.41327 * 179.74060 * 4 3 2 31 31 H 0.96996 * 120.00278 * 0.02562 * 10 8 7 32 32 H 1.08994 * 109.47468 * 59.99938 * 11 10 8 33 33 H 1.09001 * 109.46746 * 299.99938 * 11 10 8 34 34 H 1.09001 * 109.51134 * 307.89342 * 14 12 11 35 35 H 1.09002 * 109.51533 * 68.04516 * 14 12 11 36 36 H 1.09005 * 109.51360 * 177.49346 * 16 15 14 37 37 H 1.08998 * 109.55219 * 57.36880 * 16 15 14 38 38 H 1.09006 * 109.68053 * 292.57713 * 17 16 15 39 39 H 1.09000 * 109.71246 * 172.04902 * 17 16 15 40 40 H 0.97002 * 119.99851 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5479 0.7071 -0.0058 5 7 3.6122 -0.6362 -0.0046 6 1 4.4189 -1.1749 -0.0077 7 6 2.3124 -1.1041 0.0025 8 6 1.8821 -2.5073 0.0051 9 8 0.6963 -2.7800 0.0106 10 7 2.8005 -3.4937 0.0014 11 6 2.3710 -4.8944 0.0035 12 6 3.6005 -5.8048 -0.0009 13 1 4.1982 -5.6101 -0.8914 14 6 3.1566 -7.2720 0.0130 15 8 4.3014 -8.1085 0.1960 16 6 4.9783 -7.9102 1.4396 17 6 5.5156 -6.4757 1.4987 18 7 4.4082 -5.5529 1.2030 19 6 4.1376 -4.4906 2.0237 20 1 3.1230 -4.1364 2.1317 21 6 5.1672 -3.8693 2.7171 22 7 6.4197 -4.1552 2.4308 23 14 4.7752 -2.6275 4.0564 24 1 4.6533 -3.3276 5.3603 25 1 5.8657 -1.6225 4.1341 26 1 3.4949 -1.9452 3.7394 27 1 -0.3633 0.0022 1.0277 28 1 -0.3633 0.8888 -0.5157 29 1 -0.3632 -0.8911 -0.5119 30 1 4.3970 1.3745 -0.0112 31 1 3.7458 -3.2763 -0.0026 32 1 1.7694 -5.0913 -0.8839 33 1 1.7770 -5.0909 0.8960 34 1 2.4542 -7.4321 0.8310 35 1 2.6753 -7.5158 -0.9341 36 1 5.8077 -8.6131 1.5188 37 1 4.2833 -8.0729 2.2633 38 1 6.3064 -6.3491 0.7592 39 1 5.9083 -6.2709 2.4946 40 1 7.1392 -3.7208 2.9151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051272386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:54 Heat of formation + Delta-G solvation = 2.659544 kcal Electronic energy + Delta-G solvation = -24804.627655 eV Core-core repulsion = 21235.309288 eV Total energy + Delta-G solvation = -3569.318367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98748 -39.18831 -38.25209 -35.47188 -33.84865 -32.99703 -31.69247 -30.89779 -30.43258 -27.49777 -27.07635 -25.41264 -23.57843 -22.75442 -21.85327 -20.66327 -19.88560 -19.40400 -18.46985 -16.84137 -16.04988 -15.88179 -15.68255 -15.28996 -15.03376 -14.68651 -14.33236 -14.20878 -13.93805 -13.63072 -13.51009 -13.05706 -12.76511 -12.71832 -12.57294 -11.99450 -11.89986 -11.66043 -11.16500 -11.02201 -10.87510 -10.52150 -10.36029 -10.22952 -10.17897 -9.82796 -9.77226 -9.57065 -9.08331 -8.83406 -8.55269 -8.17858 -6.87463 -6.05365 -3.55996 1.57258 3.03032 3.12814 3.17158 3.25665 3.30253 3.59439 3.72559 4.21006 4.44370 4.60540 5.01297 5.09689 5.11814 5.29553 5.43342 5.47756 5.63077 5.74997 5.89731 5.94520 5.97816 6.01500 6.07097 6.10508 6.14496 6.23131 6.27197 6.42487 6.63431 6.77889 6.91160 6.96290 7.37728 7.38466 7.56377 7.77423 7.93336 8.12661 8.15142 8.60869 8.91294 9.51284 10.10764 11.00060 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.006227 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.162030 B = 4495.163154 C = 5670.626769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.082 3.918 3 N -0.504 5.504 4 C 0.210 3.790 5 N -0.548 5.548 6 H 0.428 0.572 7 C -0.077 4.077 8 C 0.587 3.413 9 O -0.544 6.544 10 N -0.693 5.693 11 C 0.137 3.863 12 C 0.124 3.876 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.074 0.926 21 C 0.010 3.990 22 N -0.899 5.899 23 Si 0.891 3.109 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.212 0.788 31 H 0.409 0.591 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.092 0.908 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 1.999 -5.200 6.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 N -0.224 5.224 4 C -0.074 4.074 5 N -0.152 5.152 6 H 0.267 0.733 7 C -0.194 4.194 8 C 0.373 3.627 9 O -0.423 6.423 10 N -0.344 5.344 11 C 0.013 3.987 12 C 0.017 3.983 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.310 6.310 16 C -0.043 4.043 17 C 0.018 3.982 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.542 5.542 23 Si 0.720 3.280 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.229 0.771 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.951 2.505 -5.251 7.033 hybrid contribution 1.371 -0.046 1.195 1.820 sum -2.580 2.458 -4.056 5.399 Atomic orbital electron populations 1.20223 0.86783 1.03220 1.02779 1.20992 0.96757 0.86759 1.00769 1.70079 1.00467 1.30575 1.21306 1.25025 0.97278 0.82301 1.02812 1.43409 1.08498 1.08778 1.54527 0.73258 1.21053 0.84207 0.95419 1.18685 1.16813 0.85922 0.82705 0.77215 1.90753 1.16214 1.83084 1.52269 1.45899 1.10119 1.05797 1.72549 1.21205 0.96347 0.79879 1.01312 1.21445 0.92054 0.92969 0.91802 0.94110 1.22859 0.87894 0.90912 1.00624 1.87809 1.43079 1.61012 1.39146 1.23349 0.95808 1.00001 0.85171 1.21424 0.89447 0.85026 1.02295 1.44092 1.34989 1.29477 1.23155 1.19275 0.92675 1.06731 1.19881 0.90863 1.25134 0.95285 0.98304 1.00294 1.69982 0.97883 1.44704 1.41651 0.86461 0.77627 0.81123 0.82801 1.21037 1.21515 1.20174 0.91110 0.91526 0.89353 0.77149 0.75358 0.91930 0.91180 0.93400 0.89805 0.90190 0.94069 0.95235 0.88946 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 9.88 36.00 0.36 -0.72 16 2 C 0.08 1.39 7.15 -82.51 -0.59 0.80 16 3 N -0.50 -8.17 11.20 -10.64 -0.12 -8.29 16 4 C 0.21 2.81 13.01 -90.57 -1.18 1.64 16 5 N -0.55 -7.93 6.07 -10.79 -0.07 -7.99 16 6 H 0.43 5.57 8.32 -40.82 -0.34 5.23 16 7 C -0.08 -1.33 7.08 -82.14 -0.58 -1.91 16 8 C 0.59 10.94 7.79 -12.82 -0.10 10.84 16 9 O -0.54 -11.07 14.82 5.21 0.08 -11.00 16 10 N -0.69 -12.44 3.77 -61.59 -0.23 -12.67 16 11 C 0.14 2.39 4.45 -4.04 -0.02 2.37 16 12 C 0.12 2.29 3.21 -67.42 -0.22 2.07 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 C 0.06 0.94 6.29 37.31 0.23 1.18 16 15 O -0.39 -7.32 10.74 -35.23 -0.38 -7.70 16 16 C 0.03 0.64 6.98 37.31 0.26 0.90 16 17 C 0.14 3.11 5.38 -3.54 -0.02 3.09 16 18 N -0.59 -12.85 3.03 -164.31 -0.50 -13.35 16 19 C -0.26 -6.01 7.06 -15.06 -0.11 -6.12 16 20 H 0.07 1.79 5.81 -52.49 -0.30 1.48 16 21 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 22 N -0.90 -22.80 11.13 55.49 0.62 -22.18 16 23 Si 0.89 20.13 29.57 -169.99 -5.03 15.11 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.37 6.48 -51.93 -0.34 1.03 16 30 H 0.21 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.41 7.47 6.56 -40.82 -0.27 7.20 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.22 6.33 -51.93 -0.33 1.89 16 40 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -29.35 325.68 -8.09 -37.44 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.33 Total: 11.45 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -2.05 Total: 14.29 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.30 Total: -64.49 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.30 Total: -18.69 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.35 -8.09 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051272386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.100 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds