Wall clock time and date at job start Tue Mar 31 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 113.99856 * 2 1 4 4 H 1.09001 * 110.64339 * 31.69315 * 3 2 1 5 5 C 1.54322 * 110.72664 * 268.54540 * 3 2 1 6 6 N 1.47018 * 107.27584 * 219.44487 * 5 3 2 7 7 C 1.36938 * 125.65040 * 178.90310 * 6 5 3 8 8 H 1.07997 * 119.99955 * 174.88101 * 7 6 5 9 9 C 1.38811 * 119.99948 * 354.87916 * 7 6 5 10 10 N 1.31621 * 119.99858 * 7.06276 * 9 7 6 11 11 Si 1.86800 * 120.00160 * 187.05962 * 9 7 6 12 12 H 1.48501 * 109.46661 * 94.98819 * 11 9 7 13 13 H 1.48502 * 109.47204 * 214.98716 * 11 9 7 14 14 H 1.48494 * 109.47037 * 334.99237 * 11 9 7 15 15 C 1.47421 * 108.70217 * 358.94245 * 6 5 3 16 16 C 1.54911 * 104.83528 * 24.12448 * 15 6 5 17 17 H 1.08999 * 110.99930 * 81.06460 * 16 15 6 18 18 N 1.46493 * 111.00951 * 204.91683 * 16 15 6 19 19 C 1.34779 * 120.00161 * 267.19898 * 18 16 15 20 20 O 1.21615 * 119.99614 * 0.02562 * 19 18 16 21 21 C 1.47375 * 120.00030 * 179.97438 * 19 18 16 22 22 C 1.47023 * 127.19541 * 359.67940 * 21 19 18 23 23 C 1.34178 * 105.95680 * 179.83255 * 22 21 19 24 24 O 1.34222 * 109.12055 * 0.44016 * 23 22 21 25 25 C 1.33653 * 110.90947 * 359.70664 * 24 23 22 26 26 C 1.50697 * 125.80061 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47021 * 299.99548 * 1 2 3 28 28 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47412 * 59.99674 * 1 2 3 30 30 H 1.08997 * 109.88175 * 338.86852 * 5 3 2 31 31 H 1.09002 * 109.87821 * 99.87235 * 5 3 2 32 32 H 0.97005 * 119.99993 * 179.97438 * 10 9 7 33 33 H 1.09000 * 110.36744 * 142.96789 * 15 6 5 34 34 H 1.09004 * 110.37096 * 265.17942 * 15 6 5 35 35 H 0.96999 * 119.99900 * 87.19553 * 18 16 15 36 36 H 1.08001 * 127.01843 * 0.02562 * 22 21 19 37 37 H 1.07994 * 125.43681 * 180.14478 * 23 22 21 38 38 H 1.08996 * 109.47416 * 270.00658 * 26 25 24 39 39 H 1.09000 * 109.47039 * 30.00128 * 26 25 24 40 40 H 1.08997 * 109.47419 * 150.00008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3736 2.0095 0.5359 5 6 2.2658 1.7894 -1.4429 6 7 3.5561 2.4940 -1.4449 7 6 4.1559 3.0578 -2.5392 8 1 5.0667 3.6264 -2.4228 9 6 3.5933 2.8985 -3.7982 10 7 2.4144 2.3269 -3.9246 11 14 4.5091 3.4954 -5.3129 12 1 5.2770 2.3694 -5.9026 13 1 3.5353 4.0068 -6.3106 14 1 5.4431 4.5843 -4.9295 15 6 4.0978 2.4922 -0.0738 16 6 3.4352 1.2719 0.6128 17 1 3.9515 0.3483 0.3509 18 7 3.3862 1.4495 2.0661 19 6 4.3814 0.9690 2.8377 20 8 5.3202 0.3884 2.3274 21 6 4.3323 1.1482 4.2997 22 6 3.2850 1.8263 5.0774 23 6 3.6639 1.7386 6.3616 24 8 4.8348 1.0862 6.4309 25 6 5.2523 0.7248 5.2137 26 6 6.5235 -0.0227 4.9037 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 2.3088 0.9351 -2.1183 31 1 1.4703 2.4671 -1.7529 32 1 2.0211 2.2159 -4.8043 33 1 5.1812 2.3741 -0.0942 34 1 3.8270 3.4132 0.4424 35 1 2.6376 1.9130 2.4731 36 1 2.3914 2.2961 4.6937 37 1 3.1166 2.1342 7.2043 38 1 7.3320 0.6890 4.7364 39 1 6.7778 -0.6707 5.7425 40 1 6.3804 -0.6272 4.0080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081337010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:51 Heat of formation + Delta-G solvation = -34.119336 kcal Electronic energy + Delta-G solvation = -23857.082117 eV Core-core repulsion = 20253.876147 eV Total energy + Delta-G solvation = -3603.205970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.68628 -39.49753 -38.03152 -35.88122 -34.07732 -33.10271 -32.04383 -31.57848 -28.83121 -27.53007 -26.64623 -26.12195 -24.39984 -23.09932 -21.38516 -20.52002 -20.09616 -19.67172 -18.04500 -16.99497 -16.48933 -16.42164 -15.78013 -15.50461 -14.98981 -14.51621 -14.41608 -14.29873 -14.12161 -13.45192 -13.29932 -13.20452 -13.03790 -13.02492 -12.67540 -12.23313 -11.90487 -11.84568 -11.54839 -11.22009 -11.01112 -10.80752 -10.73529 -10.14304 -9.98212 -9.93678 -9.82242 -9.75112 -9.11252 -8.80402 -8.65888 -8.51686 -6.87915 -5.74226 -3.07811 1.31429 1.91790 2.66281 3.37617 3.42577 3.47171 3.48632 3.49316 4.15499 4.37137 4.51765 4.72900 4.77690 5.12359 5.17847 5.36506 5.40814 5.42728 5.48862 5.53865 5.59680 5.66661 5.69283 5.74611 5.87670 5.94782 6.04258 6.06012 6.14955 6.18242 6.55426 6.64518 6.85041 6.91628 7.25821 7.48372 7.71789 7.75156 7.87068 8.20564 8.44677 9.17689 9.78144 10.41805 11.37625 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.003851 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.466965 B = 7269.424872 C = 8095.928734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.061 0.939 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.108 0.892 18 N -0.708 5.708 19 C 0.589 3.411 20 O -0.540 6.540 21 C -0.241 4.241 22 C -0.187 4.187 23 C -0.043 4.043 24 O -0.179 6.179 25 C 0.075 3.925 26 C -0.083 4.083 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.253 0.747 33 H 0.051 0.949 34 H 0.022 0.978 35 H 0.396 0.604 36 H 0.156 0.844 37 H 0.206 0.794 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -2.301 19.917 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.079 0.921 5 C 0.037 3.963 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.126 0.874 18 N -0.357 5.357 19 C 0.377 3.623 20 O -0.419 6.419 21 C -0.245 4.245 22 C -0.206 4.206 23 C -0.109 4.109 24 O -0.075 6.075 25 C 0.022 3.978 26 C -0.139 4.139 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.229 0.771 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.752 -2.923 19.558 19.790 hybrid contribution -0.628 0.995 -0.692 1.365 sum -1.379 -1.928 18.867 19.015 Atomic orbital electron populations 1.22698 0.81734 1.02020 0.99790 1.87905 1.19113 1.27543 1.95068 1.23836 0.92682 0.84106 0.99732 0.92077 1.21592 0.88498 0.97015 0.89148 1.44247 1.19873 1.65812 1.02843 1.19082 1.06082 1.26411 0.84231 0.90111 1.24832 0.97082 1.00745 0.97496 1.69953 1.15708 1.48813 1.22253 0.86088 0.78738 0.78101 0.82792 1.21485 1.21771 1.20571 1.21834 0.97532 0.93609 0.86708 1.22375 0.96118 1.01277 0.77236 0.87368 1.45710 1.24083 1.58475 1.07438 1.17151 0.82320 0.78289 0.84572 1.90765 1.33774 1.42749 1.74562 1.21242 0.98617 1.10265 0.94409 1.22886 1.00826 1.04078 0.92838 1.23806 0.86828 1.01093 0.99130 1.83759 1.34097 1.58360 1.31288 1.22835 0.96920 0.97039 0.80995 1.20621 0.89966 0.99448 1.03818 0.94892 0.90272 0.93544 0.91824 0.93597 0.93663 0.93072 0.95988 0.77062 0.82634 0.77693 0.89300 0.90580 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.88 101.05 1.10 1.60 16 2 O -0.38 -7.10 10.43 -35.23 -0.37 -7.46 16 3 C 0.06 1.07 3.05 -24.90 -0.08 0.99 16 4 H 0.06 1.03 7.74 -51.93 -0.40 0.63 16 5 C 0.16 3.98 5.16 -3.07 -0.02 3.96 16 6 N -0.60 -15.57 3.39 -170.08 -0.58 -16.15 16 7 C -0.23 -6.49 10.27 -15.06 -0.15 -6.65 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 9 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 10 N -0.92 -26.98 10.36 55.49 0.57 -26.41 16 11 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 16 C 0.14 2.60 3.15 -65.78 -0.21 2.40 16 17 H 0.11 2.37 7.54 -51.93 -0.39 1.98 16 18 N -0.71 -11.07 5.19 -52.82 -0.27 -11.35 16 19 C 0.59 9.65 7.81 -12.54 -0.10 9.55 16 20 O -0.54 -10.44 14.49 5.26 0.08 -10.37 16 21 C -0.24 -3.23 6.31 -103.28 -0.65 -3.88 16 22 C -0.19 -1.90 10.60 -37.45 -0.40 -2.30 16 23 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 24 O -0.18 -1.94 10.52 7.63 0.08 -1.86 16 25 C 0.07 0.92 7.37 -34.97 -0.26 0.66 16 26 C -0.08 -0.85 9.89 36.00 0.36 -0.50 16 27 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.77 7.21 -51.93 -0.37 1.39 16 31 H 0.05 1.21 7.61 -51.93 -0.40 0.81 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 5.03 7.74 -40.82 -0.32 4.72 16 36 H 0.16 1.21 7.74 -52.49 -0.41 0.80 16 37 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.11 1.35 6.49 -51.93 -0.34 1.01 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -33.72 337.42 -6.14 -39.86 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.55 Total: 3.05 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.16 Total: 8.39 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.28 Total: -53.91 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.21 Total: -19.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.72 -6.14 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081337010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.742 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds