Wall clock time and date at job start Tue Mar 31 2020 03:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47109 * 60.00305 * 11 9 7 13 13 H 1.48499 * 109.47578 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47363 * 300.00729 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47293 * 179.97438 * 21 19 18 23 23 C 1.34514 * 125.78852 * 90.00254 * 22 21 19 24 24 C 1.41379 * 106.84313 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84037 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.41679 * 359.74138 * 25 24 23 27 27 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 28 28 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 30 30 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 31 31 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 32 32 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 33 33 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 34 34 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 35 35 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 36 36 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 37 37 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 38 38 H 1.08008 * 126.57653 * 359.96286 * 23 22 21 39 39 H 1.07995 * 126.57935 * 180.02562 * 24 23 22 40 40 H 1.07996 * 125.78932 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6743 3.1129 -5.5043 13 1 3.4933 3.5409 -6.4748 14 1 4.5357 5.2059 -5.0535 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 6 5.6909 0.7921 4.9244 23 6 6.7909 1.5382 5.1311 24 6 7.7582 0.6888 5.7155 25 6 7.1913 -0.5255 5.8315 26 8 5.9372 -0.4555 5.3564 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4718 2.4692 -1.7521 31 1 2.3063 0.9351 -2.1187 32 1 1.9407 2.3300 -4.7744 33 1 5.1841 2.3745 -0.1004 34 1 3.8300 3.4150 0.4369 35 1 2.6047 1.8375 2.4818 36 1 4.2616 2.3321 4.5487 37 1 3.5679 0.7027 4.7286 38 1 6.9121 2.5851 4.8948 39 1 8.7598 0.9626 6.0125 40 1 7.6631 -1.4061 6.2418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082258355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:55 Heat of formation + Delta-G solvation = -55.953607 kcal Electronic energy + Delta-G solvation = -23626.685330 eV Core-core repulsion = 20022.532555 eV Total energy + Delta-G solvation = -3604.152775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.44728 -41.03003 -39.59837 -37.50128 -35.61636 -34.13889 -33.73898 -32.90255 -30.57386 -29.11377 -27.80850 -27.49081 -25.93718 -22.80603 -22.63259 -22.17218 -21.67434 -21.05841 -19.21293 -18.37364 -18.30574 -17.70998 -17.23508 -16.66432 -16.53021 -16.31795 -15.83162 -15.75817 -15.39650 -15.06424 -14.82424 -14.51469 -14.09319 -13.78344 -13.70503 -13.61183 -13.51365 -13.17167 -13.00279 -12.73935 -12.65405 -12.56662 -12.30253 -12.12540 -11.86851 -11.61444 -11.11429 -10.79624 -10.77165 -10.56330 -10.13583 -9.35704 -8.97665 -7.88361 -5.26573 0.78034 1.44971 1.48935 1.54948 1.61041 1.69025 2.03430 2.30344 2.46820 2.77026 3.30844 3.51162 3.62050 3.77530 3.93477 3.96488 4.13745 4.17913 4.20854 4.38018 4.41605 4.46305 4.52497 4.61066 4.66487 4.82812 4.89546 4.94432 5.00103 5.04720 5.25275 5.33025 5.36837 5.45849 5.64726 5.65125 6.12931 6.23500 6.31631 6.54780 7.03952 7.26279 7.69054 8.31387 9.20831 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.003694 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.097996 B = 7577.722457 C = 8763.669818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.102 0.898 5 C 0.172 3.828 6 N -0.622 5.622 7 C -0.250 4.250 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.067 0.933 18 N -0.698 5.698 19 C 0.511 3.489 20 O -0.582 6.582 21 C -0.049 4.049 22 C -0.017 4.017 23 C -0.213 4.213 24 C -0.231 4.231 25 C -0.045 4.045 26 O -0.193 6.193 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.249 0.751 33 H 0.031 0.969 34 H 0.046 0.954 35 H 0.421 0.579 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -1.807 22.028 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.119 0.881 5 C 0.046 3.954 6 N -0.350 5.350 7 C -0.379 4.379 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.085 0.915 18 N -0.351 5.351 19 C 0.298 3.702 20 O -0.461 6.461 21 C -0.088 4.088 22 C -0.067 4.067 23 C -0.232 4.232 24 C -0.250 4.250 25 C -0.112 4.112 26 O -0.090 6.090 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.259 0.741 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.320 -2.526 21.444 21.595 hybrid contribution 0.186 0.665 -1.289 1.462 sum -0.134 -1.861 20.155 20.242 Atomic orbital electron populations 1.22984 0.79230 1.03873 1.00860 1.87890 1.21848 1.27008 1.94962 1.23516 0.93208 0.85229 0.96170 0.88062 1.21334 0.87360 0.94530 0.92141 1.44521 1.20880 1.65728 1.03899 1.19420 1.02775 1.29074 0.86627 0.90039 1.25674 0.97890 1.01477 1.00386 1.70152 1.17416 1.48575 1.23531 0.85115 0.77261 0.78432 0.78286 1.20673 1.21692 1.19843 1.21926 0.96519 0.95692 0.85314 1.21797 0.95405 0.98073 0.80149 0.91464 1.45614 1.19494 1.64437 1.05520 1.21181 0.82083 0.76595 0.90307 1.90755 1.34057 1.45621 1.75689 1.20217 0.93843 1.06675 0.88039 1.21976 0.98836 0.82519 1.03363 1.21892 0.93480 1.02207 1.05620 1.22176 1.02275 0.93877 1.06660 1.24735 0.82272 1.01474 1.02701 1.83969 1.31821 1.31363 1.61855 0.94865 0.88194 0.91330 0.95859 0.96640 0.94169 0.95068 0.93631 0.74105 0.81980 0.83995 0.82568 0.81598 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.88 113.37 1.23 1.91 16 2 O -0.40 -14.15 10.44 -148.98 -1.56 -15.71 16 3 C 0.08 2.84 3.04 31.87 0.10 2.94 16 4 H 0.10 2.93 7.75 -2.39 -0.02 2.91 16 5 C 0.17 8.60 5.14 86.73 0.45 9.04 16 6 N -0.62 -33.06 3.39 -691.97 -2.35 -35.41 16 7 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 9 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 10 N -0.95 -57.40 10.31 21.65 0.22 -57.18 16 11 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.13 5.70 6.93 86.86 0.60 6.30 16 16 C 0.15 5.66 3.05 46.47 0.14 5.80 16 17 H 0.07 3.02 7.73 -2.39 -0.02 3.00 16 18 N -0.70 -17.96 5.23 -435.53 -2.28 -20.24 16 19 C 0.51 14.20 7.82 87.65 0.69 14.89 16 20 O -0.58 -23.23 15.78 -3.04 -0.05 -23.28 16 21 C -0.05 -0.83 6.23 29.10 0.18 -0.65 16 22 C -0.02 -0.40 5.81 24.83 0.14 -0.26 16 23 C -0.21 -4.92 10.81 22.19 0.24 -4.68 16 24 C -0.23 -4.81 10.91 22.19 0.24 -4.57 16 25 C -0.04 -0.90 12.09 66.97 0.81 -0.09 16 26 O -0.19 -4.89 10.65 -2.41 -0.03 -4.91 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 30 H 0.02 1.26 7.51 -2.39 -0.02 1.24 16 31 H 0.02 0.90 7.29 -2.39 -0.02 0.88 16 32 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.42 6.92 8.52 -92.71 -0.79 6.13 16 36 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -82.31 341.22 2.41 -79.91 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.26 Total: 14.39 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.15 Total: 13.96 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.40 Total: -112.83 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.63 Total: -43.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -82.31 2.41 -79.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082258355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.952 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds