Wall clock time and date at job start Tue Mar 31 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34176 * 127.02287 * 2 1 4 4 O 1.34217 * 109.12237 * 179.97438 * 3 2 1 5 5 C 1.33645 * 110.91082 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.80375 * 180.02562 * 5 4 3 7 7 C 1.36420 * 108.40003 * 359.97438 * 5 4 3 8 8 C 1.47377 * 127.19579 * 180.26038 * 7 5 4 9 9 O 1.21612 * 119.99754 * 269.68850 * 8 7 5 10 10 N 1.34778 * 119.99905 * 89.68366 * 8 7 5 11 11 C 1.46497 * 120.00046 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88730 * 34.29907 * 11 10 8 13 13 C 1.54906 * 111.00434 * 270.41909 * 11 10 8 14 14 N 1.47473 * 104.81423 * 204.94918 * 13 11 10 15 15 C 1.36937 * 125.62792 * 204.14064 * 14 13 11 16 16 H 1.07999 * 120.00129 * 359.94497 * 15 14 13 17 17 C 1.38817 * 119.99437 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00013 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99532 * 179.97438 * 17 15 14 20 20 H 1.48488 * 109.47192 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46852 * 120.00153 * 19 17 15 22 22 H 1.48501 * 109.46787 * 239.99838 * 19 17 15 23 23 C 1.47020 * 108.71763 * 24.07232 * 14 13 11 24 24 C 1.54318 * 107.27501 * 358.97401 * 23 14 13 25 25 H 1.08998 * 110.72675 * 219.44406 * 24 23 14 26 26 O 1.42898 * 110.87396 * 96.24148 * 24 23 14 27 27 H 1.08996 * 109.47351 * 269.99781 * 1 2 3 28 28 H 1.08996 * 109.47402 * 30.00194 * 1 2 3 29 29 H 1.09013 * 109.46938 * 149.99719 * 1 2 3 30 30 H 1.07997 * 125.43942 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47036 * 269.97871 * 6 5 4 32 32 H 1.09008 * 109.47041 * 29.97555 * 6 5 4 33 33 H 1.09002 * 109.47467 * 149.97463 * 6 5 4 34 34 H 0.96999 * 119.99683 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.36925 * 323.75577 * 13 11 10 36 36 H 1.09005 * 110.36699 * 86.07546 * 13 11 10 37 37 H 0.97001 * 119.99626 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.87835 * 239.55631 * 23 14 13 39 39 H 1.08997 * 109.88533 * 118.39604 * 23 14 13 40 40 H 0.96698 * 113.99878 * 66.39050 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0004 6 6 4.9291 -1.4921 0.0014 7 6 2.3922 -1.1739 0.0003 8 6 1.9913 -2.5921 0.0054 9 8 1.8222 -3.1799 -1.0457 10 7 1.8122 -3.2375 1.1750 11 6 1.4142 -4.6473 1.1801 12 1 1.8581 -5.1795 0.3387 13 6 -0.1283 -4.7889 1.1751 14 7 -0.3880 -6.1077 1.7817 15 6 -1.5083 -6.8700 1.5842 16 1 -2.2963 -6.5143 0.9370 17 6 -1.6313 -8.0997 2.2164 18 7 -0.6713 -8.5327 3.0059 19 14 -3.1599 -9.1393 1.9475 20 1 -4.0827 -8.4328 1.0234 21 1 -2.7725 -10.4455 1.3568 22 1 -3.8391 -9.3663 3.2484 23 6 0.7556 -6.4693 2.6321 24 6 1.7858 -5.3252 2.5254 25 1 2.8004 -5.7219 2.4900 26 8 1.6414 -4.4072 3.6109 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5139 30 1 1.9895 2.1010 0.0004 31 1 5.2353 -1.6890 -1.0260 32 1 5.7163 -0.9406 0.5158 33 1 4.7522 -2.4370 0.5153 34 1 1.9468 -2.7684 2.0133 35 1 -0.5836 -4.0000 1.7739 36 1 -0.5088 -4.7586 0.1541 37 1 -0.7575 -9.3919 3.4480 38 1 1.1987 -7.4012 2.2807 39 1 0.4288 -6.5786 3.6661 40 1 1.8616 -4.7818 4.4747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083440329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:21 Heat of formation + Delta-G solvation = -44.809560 kcal Electronic energy + Delta-G solvation = -24015.401888 eV Core-core repulsion = 20411.732355 eV Total energy + Delta-G solvation = -3603.669533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62711 -39.47054 -37.80099 -34.84905 -34.03710 -33.82232 -32.63886 -31.57655 -28.73285 -28.13368 -27.09530 -26.46477 -24.58541 -22.98637 -20.56622 -20.23655 -19.88887 -19.63495 -17.86350 -17.14748 -16.81874 -16.38213 -15.78445 -15.29968 -14.82675 -14.71211 -14.24562 -13.99664 -13.61792 -13.37613 -13.35249 -13.14129 -13.03274 -12.83102 -12.68739 -12.55476 -12.45620 -12.19148 -11.43974 -11.29847 -10.94887 -10.85980 -10.52610 -10.48002 -10.13051 -9.85449 -9.81693 -9.44825 -9.32214 -8.71075 -8.63788 -8.57389 -6.87499 -5.75202 -3.07955 1.52820 2.15632 2.71223 2.73809 3.39449 3.44465 3.46959 3.49900 4.34826 4.48448 4.55632 4.76574 4.88766 5.05699 5.17271 5.24876 5.28546 5.35743 5.46465 5.53024 5.54785 5.59099 5.70985 5.78573 5.85347 5.86691 6.03582 6.07598 6.21557 6.32975 6.60679 6.66656 6.93783 6.96223 7.32724 7.44155 7.72621 7.82801 8.06512 8.19426 8.46251 9.17867 9.77887 10.42353 11.37208 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.003725 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.515112 B = 7515.192169 C = 7977.209506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.144 4.144 3 C -0.046 4.046 4 O -0.175 6.175 5 C 0.038 3.962 6 C -0.078 4.078 7 C -0.222 4.222 8 C 0.587 3.413 9 O -0.535 6.535 10 N -0.698 5.698 11 C 0.137 3.863 12 H 0.104 0.896 13 C 0.132 3.868 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.155 3.845 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.567 6.567 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.206 0.794 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.252 0.748 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 17.026 -1.396 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C -0.111 4.111 4 O -0.072 6.072 5 C -0.013 4.013 6 C -0.135 4.135 7 C -0.226 4.226 8 C 0.372 3.628 9 O -0.412 6.412 10 N -0.349 5.349 11 C 0.032 3.968 12 H 0.122 0.878 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.029 3.971 24 C 0.008 3.992 25 H 0.079 0.921 26 O -0.373 6.373 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.223 0.777 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.244 0.756 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.253 16.957 -2.563 19.981 hybrid contribution -0.822 -0.808 0.781 1.392 sum 9.431 16.149 -1.783 18.786 Atomic orbital electron populations 1.20224 0.88538 1.03108 1.02662 1.21384 0.96929 0.90551 1.05719 1.23578 0.79624 0.99440 1.08498 1.83692 1.29588 1.21894 1.72008 1.22497 0.96044 0.80772 1.02014 1.20420 0.91070 0.97760 1.04211 1.21108 0.93124 0.94222 1.14181 1.17322 0.76899 0.84549 0.84063 1.90813 1.51069 1.67694 1.31627 1.45789 1.68438 1.12298 1.08339 1.22386 0.97507 0.80187 0.96734 0.87812 1.21840 0.91557 0.89244 0.96929 1.44298 1.18885 1.16517 1.53053 1.19152 0.94503 0.98007 1.23501 0.90202 1.24786 0.98479 0.97717 0.99523 1.69922 1.32510 1.20779 1.34267 0.85998 0.82039 0.80172 0.77319 1.20447 1.21713 1.21757 1.21859 0.86034 0.92578 0.96621 1.23503 0.98679 0.91053 0.85924 0.92127 1.86257 1.92190 1.40969 1.17910 0.90833 0.91247 0.91019 0.77750 0.89388 0.89926 0.89104 0.75616 0.95605 0.93738 0.93790 0.92614 0.92870 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.38 36.01 0.37 -0.61 16 2 C -0.14 -1.79 6.38 -102.49 -0.65 -2.45 16 3 C -0.05 -0.46 11.96 29.30 0.35 -0.11 16 4 O -0.18 -2.01 10.52 7.67 0.08 -1.93 16 5 C 0.04 0.47 7.37 -34.96 -0.26 0.21 16 6 C -0.08 -0.71 10.24 36.01 0.37 -0.34 16 7 C -0.22 -3.18 6.07 -103.27 -0.63 -3.81 16 8 C 0.59 9.94 7.25 -12.54 -0.09 9.85 16 9 O -0.54 -11.08 16.80 5.27 0.09 -10.99 16 10 N -0.70 -11.27 5.17 -52.82 -0.27 -11.55 16 11 C 0.14 2.59 3.25 -65.78 -0.21 2.37 16 12 H 0.10 2.07 7.63 -51.93 -0.40 1.67 16 13 C 0.13 2.94 6.92 -2.50 -0.02 2.92 16 14 N -0.60 -15.55 3.40 -170.04 -0.58 -16.12 16 15 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.93 -26.79 10.31 55.49 0.57 -26.21 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.15 3.61 5.14 -3.07 -0.02 3.60 16 24 C 0.07 1.22 4.19 -24.90 -0.10 1.12 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 O -0.57 -9.01 12.14 -35.23 -0.43 -9.44 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 34 H 0.41 6.04 7.55 -40.82 -0.31 5.73 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.43 7.38 -51.93 -0.38 1.05 16 39 H 0.05 1.36 7.44 -51.93 -0.39 0.97 16 40 H 0.38 4.64 9.12 45.56 0.42 5.05 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -34.18 340.53 -6.39 -40.57 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.82 Total: 7.43 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.14 Total: 5.91 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.28 Total: -53.89 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.26 Total: -22.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.18 -6.39 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083440329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.245 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds