Wall clock time and date at job start Tue Mar 31 2020 04:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35363 * 126.38524 * 2 1 4 4 C 1.41502 * 105.50348 * 180.10180 * 3 2 1 5 5 C 1.47708 * 126.51845 * 179.87483 * 4 3 2 6 6 O 1.21568 * 120.00073 * 359.70983 * 5 4 3 7 7 N 1.34785 * 119.99920 * 179.43625 * 5 4 3 8 8 C 1.46495 * 119.99911 * 180.27258 * 7 5 4 9 9 H 1.09005 * 109.45913 * 35.00201 * 8 7 5 10 10 C 1.53037 * 109.46608 * 275.02922 * 8 7 5 11 11 C 1.53188 * 109.31940 * 178.61297 * 10 8 7 12 12 N 1.46935 * 108.77355 * 54.63290 * 11 10 8 13 13 C 1.36937 * 120.63060 * 126.41482 * 12 11 10 14 14 H 1.07999 * 119.99659 * 331.82287 * 13 12 11 15 15 C 1.38802 * 119.99961 * 151.82488 * 13 12 11 16 16 N 1.31619 * 120.00328 * 343.07495 * 15 13 12 17 17 Si 1.86807 * 120.00180 * 163.07169 * 15 13 12 18 18 H 1.48506 * 109.46717 * 59.99911 * 17 15 13 19 19 H 1.48489 * 109.47376 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46861 * 300.00225 * 17 15 13 21 21 C 1.46923 * 118.73847 * 306.39833 * 12 11 10 22 22 C 1.53043 * 109.46216 * 154.97285 * 8 7 5 23 23 H 1.09007 * 109.49307 * 301.34394 * 22 8 7 24 24 O 1.42895 * 109.49528 * 61.43143 * 22 8 7 25 25 N 1.31806 * 106.96388 * 359.61341 * 4 3 2 26 26 N 1.28467 * 110.07232 * 0.23903 * 25 4 3 27 27 H 0.97009 * 124.88439 * 179.97438 * 26 25 4 28 28 H 1.08997 * 109.47473 * 270.30668 * 1 2 3 29 29 H 1.08999 * 109.46504 * 30.30877 * 1 2 3 30 30 H 1.08997 * 109.46485 * 150.30672 * 1 2 3 31 31 H 1.07996 * 127.25265 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00050 * 0.27843 * 7 5 4 33 33 H 1.08998 * 109.49605 * 298.56928 * 10 8 7 34 34 H 1.09005 * 109.49891 * 58.66011 * 10 8 7 35 35 H 1.08995 * 109.59003 * 174.41515 * 11 10 8 36 36 H 1.09001 * 109.58844 * 294.85126 * 11 10 8 37 37 H 0.97001 * 120.00188 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.58784 * 173.39229 * 21 12 11 39 39 H 1.09003 * 109.58472 * 293.67734 * 21 12 11 40 40 H 0.96697 * 113.99945 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0024 5 6 4.8765 1.3812 -0.0060 6 8 4.8213 2.5956 -0.0124 7 7 6.0731 0.7609 0.0035 8 6 7.3072 1.5502 0.0060 9 1 7.1564 2.4581 0.5902 10 6 7.6763 1.9243 -1.4313 11 6 8.9478 2.7786 -1.4221 12 7 10.0003 2.0523 -0.6983 13 6 11.2210 1.8318 -1.2783 14 1 11.3030 1.7588 -2.3527 15 6 12.3528 1.7020 -0.4854 16 7 12.3308 2.1119 0.7652 17 14 13.9074 0.9456 -1.1930 18 1 14.3699 1.7553 -2.3488 19 1 14.9650 0.9219 -0.1510 20 1 13.6230 -0.4410 -1.6421 21 6 9.7181 1.5674 0.6596 22 6 8.4380 0.7266 0.6266 23 1 8.1645 0.4405 1.6423 24 8 8.6583 -0.4477 -0.1572 25 7 3.5420 -0.7296 0.0048 26 7 2.3081 -1.0870 0.0064 27 1 1.9966 -2.0058 0.0110 28 1 -0.3634 0.0055 1.0276 29 1 -0.3632 0.8872 -0.5186 30 1 -0.3632 -0.8927 -0.5091 31 1 2.0058 2.1260 -0.0004 32 1 6.1171 -0.2081 0.0085 33 1 7.8516 1.0172 -2.0097 34 1 6.8606 2.4909 -1.8807 35 1 9.2705 2.9646 -2.4464 36 1 8.7478 3.7262 -0.9219 37 1 13.1219 2.0215 1.3192 38 1 10.5490 0.9543 1.0087 39 1 9.5833 2.4162 1.3300 40 1 9.3628 -1.0184 0.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090105008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:31 Heat of formation + Delta-G solvation = -18.206877 kcal Electronic energy + Delta-G solvation = -23840.739306 eV Core-core repulsion = 20270.516103 eV Total energy + Delta-G solvation = -3570.223203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67487 -40.94822 -39.34879 -36.49458 -35.75559 -34.09494 -33.51844 -32.88146 -31.12460 -30.68995 -27.93828 -27.17042 -25.23159 -23.93370 -23.23470 -22.22271 -21.24674 -20.72620 -19.12839 -18.64657 -17.93500 -17.44259 -17.07321 -16.92281 -16.71392 -15.75053 -15.72089 -15.40448 -15.28309 -14.96420 -14.78238 -14.47382 -14.05112 -13.79498 -13.67980 -13.64372 -13.15098 -13.06642 -12.78649 -12.62219 -12.38891 -12.26043 -12.04120 -11.89379 -11.83447 -11.50825 -11.19904 -10.75587 -10.57118 -10.48419 -10.01607 -9.91888 -8.66815 -7.86632 -5.31074 0.48787 1.12193 1.49852 1.50926 1.58590 1.85903 2.23654 2.33569 2.52826 3.25203 3.36506 3.40894 3.65897 3.82023 3.85915 4.00623 4.09509 4.34442 4.38262 4.47560 4.60549 4.61291 4.73966 4.82365 4.87228 4.95028 5.04489 5.07056 5.13496 5.18033 5.35414 5.42331 5.46371 5.56285 5.65825 6.12195 6.38102 6.48176 6.87088 6.91332 7.14627 7.15949 7.83197 8.36896 9.19901 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.003217 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.847012 B = 8700.618857 C = 8954.910401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.034 3.966 3 C -0.206 4.206 4 C -0.035 4.035 5 C 0.596 3.404 6 O -0.572 6.572 7 N -0.696 5.696 8 C 0.167 3.833 9 H 0.079 0.921 10 C -0.120 4.120 11 C 0.146 3.854 12 N -0.598 5.598 13 C -0.256 4.256 14 H 0.062 0.938 15 C -0.046 4.046 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.281 1.281 19 H -0.294 1.294 20 H -0.276 1.276 21 C 0.152 3.848 22 C 0.091 3.909 23 H 0.067 0.933 24 O -0.561 6.561 25 N -0.271 5.271 26 N -0.364 5.364 27 H 0.462 0.538 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.015 0.985 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.007 0.993 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.780 -9.547 0.465 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.234 4.234 4 C -0.195 4.195 5 C 0.381 3.619 6 O -0.449 6.449 7 N -0.346 5.346 8 C 0.063 3.937 9 H 0.097 0.903 10 C -0.160 4.160 11 C 0.020 3.980 12 N -0.321 5.321 13 C -0.386 4.386 14 H 0.079 0.921 15 C -0.242 4.242 16 N -0.582 5.582 17 Si 0.796 3.204 18 H -0.207 1.207 19 H -0.220 1.220 20 H -0.202 1.202 21 C 0.025 3.975 22 C 0.030 3.970 23 H 0.085 0.915 24 O -0.368 6.368 25 N -0.108 5.108 26 N -0.082 5.082 27 H 0.310 0.690 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.180 0.820 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -23.469 -9.350 0.216 25.264 hybrid contribution 1.201 -0.331 0.193 1.260 sum -22.268 -9.681 0.409 24.285 Atomic orbital electron populations 1.20546 0.83013 1.05621 1.04861 1.21985 0.97101 0.85841 1.04303 1.21741 0.90096 1.00998 1.10600 1.21767 0.95011 0.90452 1.12230 1.17323 0.82560 0.86331 0.75645 1.90756 1.87392 1.14406 1.52392 1.45885 1.04375 1.11214 1.73097 1.20805 0.81939 0.93659 0.97346 0.90323 1.22090 0.97502 1.00297 0.96151 1.20966 0.88204 0.92649 0.96196 1.44093 1.10719 1.62850 1.14449 1.19395 0.84813 1.42668 0.91761 0.92070 1.25717 1.00100 1.01317 0.97030 1.70155 1.29606 1.49772 1.08638 0.85337 0.79095 0.78859 0.77075 1.20659 1.22007 1.20236 1.21307 0.94628 0.95539 0.86039 1.22512 0.94790 0.86554 0.93176 0.91510 1.86334 1.59499 1.34708 1.56284 1.73498 1.03339 1.14317 1.19683 1.43430 1.02033 1.10738 1.51955 0.68964 0.88692 0.88692 0.88632 0.81991 0.74916 0.91892 0.92301 0.92412 0.96740 0.93971 0.90808 0.97527 0.76499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 71.24 0.74 0.36 16 2 C 0.03 0.50 7.23 41.40 0.30 0.80 16 3 C -0.21 -4.69 10.73 22.41 0.24 -4.45 16 4 C -0.04 -1.00 7.13 42.46 0.30 -0.69 16 5 C 0.60 20.63 7.79 86.74 0.68 21.31 16 6 O -0.57 -23.27 16.59 -3.93 -0.07 -23.34 16 7 N -0.70 -23.22 5.05 -445.40 -2.25 -25.47 16 8 C 0.17 6.32 2.20 45.02 0.10 6.42 16 9 H 0.08 3.22 7.58 -2.38 -0.02 3.20 16 10 C -0.12 -4.80 5.51 30.67 0.17 -4.63 16 11 C 0.15 6.61 6.52 86.36 0.56 7.17 16 12 N -0.60 -30.54 2.93 -699.11 -2.05 -32.59 16 13 C -0.26 -14.18 9.58 84.03 0.81 -13.37 16 14 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 15 C -0.05 -2.56 4.92 84.86 0.42 -2.15 16 16 N -0.94 -54.33 11.20 21.65 0.24 -54.09 16 17 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.15 7.18 4.95 86.36 0.43 7.61 16 22 C 0.09 3.42 3.38 30.67 0.10 3.53 16 23 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 24 O -0.56 -20.26 12.08 -148.98 -1.80 -22.06 16 25 N -0.27 -6.43 11.92 -48.18 -0.57 -7.01 16 26 N -0.36 -5.38 6.83 -47.93 -0.33 -5.71 16 27 H 0.46 2.85 8.96 -219.98 -1.97 0.87 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.41 12.78 7.98 -92.71 -0.74 12.04 16 33 H 0.06 2.61 7.61 -2.39 -0.02 2.59 16 34 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 36 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.07 3.81 6.06 -2.39 -0.01 3.79 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.39 11.97 9.08 -74.06 -0.67 11.29 16 Total: -1.00 -73.34 334.33 -2.24 -75.58 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -2.29 Total: 26.18 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 4.85 Total: 21.89 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -4.96 Total: -124.86 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.87 Total: -45.39 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.34 -2.24 -75.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090105008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.372 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds