Wall clock time and date at job start Tue Mar 31 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35361 * 127.25438 * 2 1 4 4 N 1.35034 * 107.23230 * 180.27200 * 3 2 1 5 5 H 0.97004 * 124.88338 * 179.72207 * 4 3 2 6 6 N 1.28466 * 110.22942 * 359.74829 * 4 3 2 7 7 C 1.31809 * 110.07517 * 359.97438 * 6 4 3 8 8 C 1.47701 * 126.52009 * 179.97438 * 7 6 4 9 9 O 1.21577 * 120.00116 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00018 * 359.74750 * 8 7 6 11 11 C 1.46504 * 120.00063 * 180.27205 * 10 8 7 12 12 H 1.08989 * 109.46362 * 325.00718 * 11 10 8 13 13 C 1.53041 * 109.45719 * 84.97886 * 11 10 8 14 14 C 1.53189 * 109.31337 * 181.40049 * 13 11 10 15 15 N 1.46929 * 108.76273 * 305.34020 * 14 13 11 16 16 C 1.36941 * 120.63104 * 233.63575 * 15 14 13 17 17 H 1.08000 * 119.99815 * 151.80874 * 16 15 14 18 18 C 1.38808 * 120.00249 * 331.81749 * 16 15 14 19 19 N 1.31624 * 119.99867 * 343.07854 * 18 16 15 20 20 Si 1.86794 * 120.00223 * 163.07645 * 18 16 15 21 21 H 1.48499 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47020 * 119.99725 * 20 18 16 23 23 H 1.48500 * 109.47313 * 239.99590 * 20 18 16 24 24 C 1.46924 * 118.73830 * 53.61692 * 15 14 13 25 25 C 1.53038 * 109.45998 * 205.02838 * 11 10 8 26 26 H 1.09006 * 109.49803 * 298.56890 * 25 11 10 27 27 O 1.42897 * 109.49980 * 58.66599 * 25 11 10 28 28 H 1.09003 * 109.47095 * 270.13363 * 1 2 3 29 29 H 1.09003 * 109.46852 * 30.12656 * 1 2 3 30 30 H 1.08997 * 109.47749 * 150.13076 * 1 2 3 31 31 H 1.08002 * 126.38397 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99993 * 0.28063 * 10 8 7 33 33 H 1.09009 * 109.49630 * 301.33950 * 13 11 10 34 34 H 1.09004 * 109.50257 * 61.42946 * 13 11 10 35 35 H 1.09007 * 109.58781 * 185.56327 * 14 13 11 36 36 H 1.09000 * 109.60127 * 65.12758 * 14 13 11 37 37 H 0.96996 * 120.00100 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.58749 * 186.60044 * 24 15 14 39 39 H 1.09005 * 109.70202 * 66.25081 * 24 15 14 40 40 H 0.96698 * 114.00485 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0774 0.0000 4 7 3.5951 0.6151 -0.0061 5 1 4.3887 1.1728 -0.0114 6 7 3.5997 -0.6696 -0.0045 7 6 2.3634 -1.1265 0.0031 8 6 1.9504 -2.5446 0.0067 9 8 0.7696 -2.8338 0.0135 10 7 2.8826 -3.5180 -0.0031 11 6 2.4729 -4.9245 -0.0055 12 1 1.5671 -5.0400 0.5894 13 6 2.1995 -5.3734 -1.4429 14 6 1.7378 -6.8340 -1.4384 15 7 2.7406 -7.6445 -0.7339 16 6 3.2890 -8.7488 -1.3297 17 1 4.2855 -9.0680 -1.0621 18 6 2.5643 -9.4579 -2.2777 19 7 1.2618 -9.2920 -2.3696 20 14 3.4374 -10.6474 -3.4231 21 1 4.8909 -10.6512 -3.1186 22 1 2.8874 -12.0134 -3.2309 23 1 3.2282 -10.2231 -4.8307 24 6 3.1442 -7.2473 0.6219 25 6 3.5897 -5.7819 0.5943 26 1 4.4887 -5.6863 -0.0146 27 8 3.8658 -5.3422 1.9257 28 1 -0.3633 0.0024 1.0277 29 1 -0.3633 0.8889 -0.5158 30 1 -0.3634 -0.8911 -0.5118 31 1 2.0221 2.1137 -0.0004 32 1 3.8247 -3.2872 -0.0084 33 1 1.4204 -4.7471 -1.8776 34 1 3.1117 -5.2817 -2.0325 35 1 1.6367 -7.1885 -2.4642 36 1 0.7789 -6.9129 -0.9261 37 1 0.7553 -9.7878 -3.0318 38 1 3.9710 -7.8745 0.9555 39 1 2.3015 -7.3603 1.3041 40 1 4.5649 -5.8426 2.3682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090251290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:10 Heat of formation + Delta-G solvation = -19.355013 kcal Electronic energy + Delta-G solvation = -23972.755786 eV Core-core repulsion = 20402.482796 eV Total energy + Delta-G solvation = -3570.272990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61388 -40.91961 -39.30360 -36.98530 -35.80619 -33.96851 -33.85826 -32.50558 -31.43150 -30.15022 -28.05718 -27.17407 -25.19529 -23.94303 -23.33047 -21.53536 -21.42037 -20.79376 -19.16044 -18.87955 -18.03241 -17.98652 -17.30493 -16.82134 -16.71571 -15.75860 -15.65522 -15.54284 -15.05392 -14.94897 -14.60823 -14.26481 -14.00451 -13.87377 -13.77035 -13.60892 -13.28386 -13.02990 -12.96769 -12.75344 -12.37972 -12.09932 -12.05102 -11.88581 -11.82429 -11.42389 -11.13521 -10.97011 -10.58076 -10.45206 -10.02372 -9.76643 -8.76229 -7.89894 -5.37925 0.53127 1.19941 1.48173 1.50090 1.60772 1.91891 2.30201 2.36162 2.49555 3.11606 3.27280 3.44000 3.62619 3.85525 3.95795 4.05452 4.19123 4.21117 4.38268 4.51248 4.53231 4.59393 4.68094 4.84211 4.91281 4.93603 5.00788 5.05545 5.11716 5.20995 5.36725 5.44737 5.57090 5.60495 5.65804 6.17895 6.34361 6.50014 6.87791 6.90786 7.09775 7.20184 7.77755 8.31080 9.17719 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.003574 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.381929 B = 7831.432312 C = 8150.945979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.178 4.178 3 C 0.010 3.990 4 N -0.361 5.361 5 H 0.466 0.534 6 N -0.272 5.272 7 C -0.042 4.042 8 C 0.593 3.407 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.170 3.830 12 H 0.060 0.940 13 C -0.129 4.129 14 C 0.182 3.818 15 N -0.604 5.604 16 C -0.266 4.266 17 H 0.077 0.923 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.291 1.291 24 C 0.119 3.881 25 C 0.102 3.898 26 H 0.071 0.929 27 O -0.571 6.571 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.234 0.766 32 H 0.412 0.588 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.063 0.937 36 H -0.006 1.006 37 H 0.251 0.749 38 H 0.077 0.923 39 H 0.014 0.986 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 22.818 5.292 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.188 4.188 3 C -0.135 4.135 4 N -0.078 5.078 5 H 0.315 0.685 6 N -0.110 5.110 7 C -0.201 4.201 8 C 0.379 3.621 9 O -0.446 6.446 10 N -0.343 5.343 11 C 0.065 3.935 12 H 0.078 0.922 13 C -0.169 4.169 14 C 0.055 3.945 15 N -0.328 5.328 16 C -0.396 4.396 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.218 1.218 24 C -0.008 4.008 25 C 0.041 3.959 26 H 0.089 0.911 27 O -0.378 6.378 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.250 0.750 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.012 0.988 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.030 22.554 5.082 24.165 hybrid contribution 0.264 -0.897 -0.505 1.062 sum 7.294 21.658 4.577 23.307 Atomic orbital electron populations 1.20130 0.87995 1.02954 1.02332 1.20729 0.98309 0.90913 1.08892 1.23299 0.82976 1.01609 1.05611 1.43354 1.09827 1.03476 1.51169 0.68546 1.73451 1.22333 0.95681 1.19508 1.21730 0.90956 0.94326 1.13104 1.17353 0.85171 0.83879 0.75663 1.90751 1.18305 1.83443 1.52140 1.45749 1.10099 1.05120 1.73376 1.20709 0.97302 0.79435 0.96048 0.92208 1.22337 1.01300 0.97846 0.95429 1.20541 0.89308 0.87075 0.97571 1.44255 1.47818 1.28593 1.12150 1.19603 0.97071 1.03607 1.19305 0.90559 1.25898 0.95487 1.00032 1.03173 1.70211 1.06231 1.45149 1.36549 0.85151 0.78676 0.77875 0.78365 1.18555 1.22045 1.21788 1.21678 0.98403 0.93808 0.86877 1.22314 0.96511 0.93371 0.83690 0.91113 1.86467 1.61724 1.61965 1.27687 0.91560 0.88931 0.93139 0.74950 0.75213 0.92366 0.91435 0.91818 0.98761 0.93999 0.90487 0.96808 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.92 71.23 0.71 -0.95 16 2 C -0.18 -4.05 6.25 -19.72 -0.12 -4.18 16 3 C 0.01 0.13 11.97 83.54 1.00 1.13 16 4 N -0.36 -4.79 6.83 -57.51 -0.39 -5.19 16 5 H 0.47 1.91 8.96 -219.99 -1.97 -0.06 16 6 N -0.27 -6.29 11.92 -48.18 -0.57 -6.87 16 7 C -0.04 -1.21 7.13 42.46 0.30 -0.91 16 8 C 0.59 21.37 7.79 86.74 0.68 22.04 16 9 O -0.57 -24.21 14.78 -3.96 -0.06 -24.27 16 10 N -0.69 -23.49 4.91 -445.41 -2.19 -25.67 16 11 C 0.17 6.56 2.12 45.02 0.10 6.66 16 12 H 0.06 2.68 7.57 -2.39 -0.02 2.67 16 13 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 14 C 0.18 9.26 5.30 86.36 0.46 9.71 16 15 N -0.60 -30.50 2.99 -699.08 -2.09 -32.59 16 16 C -0.27 -14.40 9.58 84.03 0.81 -13.60 16 17 H 0.08 3.92 7.88 -2.91 -0.02 3.89 16 18 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 19 N -0.94 -56.07 11.20 21.65 0.24 -55.83 16 20 Si 0.97 44.45 29.59 68.60 2.03 46.47 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.12 4.91 6.14 86.36 0.53 5.44 16 25 C 0.10 3.54 3.14 30.67 0.10 3.63 16 26 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 27 O -0.57 -17.01 13.16 -148.98 -1.96 -18.97 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.45 6.73 -2.39 -0.02 1.43 16 31 H 0.23 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.41 12.19 8.33 -92.71 -0.77 11.41 16 33 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.06 3.61 6.06 -2.38 -0.01 3.59 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.08 2.88 7.93 -2.39 -0.02 2.87 16 39 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.40 7.90 9.08 -74.06 -0.67 7.23 16 Total: -1.00 -77.67 332.54 -2.17 -79.84 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -2.32 Total: 21.71 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 5.14 Total: 21.36 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.01 Total: -126.15 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.02 Total: -43.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -77.67 -2.17 -79.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090251290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.487 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds