Wall clock time and date at job start Tue Mar 31 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30446 * 125.99003 * 2 1 4 4 N 1.39928 * 108.89847 * 179.97438 * 3 2 1 5 5 H 0.97002 * 125.76043 * 180.02562 * 4 3 2 6 6 C 1.34268 * 108.48995 * 359.75542 * 4 3 2 7 7 C 1.38047 * 107.41559 * 0.38971 * 6 4 3 8 8 C 1.47420 * 126.41316 * 179.87620 * 7 6 4 9 9 O 1.21605 * 120.00185 * 179.69030 * 8 7 6 10 10 N 1.34777 * 120.00288 * 359.68895 * 8 7 6 11 11 C 1.46497 * 120.00361 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46396 * 35.02695 * 11 10 8 13 13 C 1.53044 * 109.46189 * 275.06459 * 11 10 8 14 14 C 1.52755 * 109.38132 * 301.22024 * 13 11 10 15 15 N 1.46923 * 109.00900 * 305.58408 * 14 13 11 16 16 C 1.36943 * 120.62930 * 233.58508 * 15 14 13 17 17 H 1.08000 * 119.99888 * 152.17192 * 16 15 14 18 18 C 1.38811 * 119.99955 * 332.17173 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46669 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46948 * 299.99298 * 20 18 16 23 23 H 1.48498 * 109.47140 * 59.99949 * 20 18 16 24 24 C 1.46927 * 118.73893 * 53.31139 * 15 14 13 25 25 C 1.53046 * 109.46379 * 154.99790 * 11 10 8 26 26 H 1.08999 * 109.49861 * 178.60651 * 25 11 10 27 27 O 1.42898 * 109.49343 * 298.70602 * 25 11 10 28 28 H 1.08999 * 109.47203 * 270.00210 * 1 2 3 29 29 H 1.09002 * 109.46571 * 30.00184 * 1 2 3 30 30 H 1.08994 * 109.46897 * 149.99815 * 1 2 3 31 31 H 1.07994 * 126.29231 * 180.24903 * 6 4 3 32 32 H 0.97006 * 119.99741 * 359.97438 * 10 8 7 33 33 H 1.09007 * 109.49256 * 61.29397 * 13 11 10 34 34 H 1.09002 * 109.49531 * 181.39096 * 13 11 10 35 35 H 1.09005 * 109.50719 * 185.70148 * 14 13 11 36 36 H 1.09006 * 109.43430 * 65.42411 * 14 13 11 37 37 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.58525 * 66.43417 * 24 15 14 39 39 H 1.08995 * 109.58430 * 186.71314 * 24 15 14 40 40 H 0.96702 * 113.99942 * 179.83960 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3843 1.2300 0.0011 6 6 3.6439 -0.6980 0.0064 7 6 2.3372 -1.1433 0.0005 8 6 1.8915 -2.5485 0.0012 9 8 0.7038 -2.8097 0.0013 10 7 2.8003 -3.5438 0.0017 11 6 2.3574 -4.9402 0.0018 12 1 1.4456 -5.0321 -0.5884 13 6 2.0813 -5.3874 1.4392 14 6 3.3517 -5.2287 2.2724 15 7 4.4486 -5.9523 1.6151 16 6 5.1821 -6.8819 2.3030 17 1 5.6470 -7.7012 1.7749 18 6 5.3280 -6.7710 3.6789 19 7 5.0679 -5.6286 4.2784 20 14 5.8936 -8.2434 4.6797 21 1 5.9692 -7.8672 6.1143 22 1 4.9270 -9.3579 4.5101 23 1 7.2346 -8.6753 4.2103 24 6 4.7396 -5.6639 0.2041 25 6 3.4500 -5.8218 -0.6075 26 1 3.1313 -6.8639 -0.5851 27 8 3.6855 -5.4233 -1.9594 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 4.5297 -1.3158 0.0121 32 1 3.7477 -3.3354 0.0013 33 1 1.2867 -4.7743 1.8646 34 1 1.7754 -6.4337 1.4422 35 1 3.1876 -5.6402 3.2683 36 1 3.6055 -4.1714 2.3489 37 1 5.1702 -5.5510 5.2398 38 1 5.1090 -4.6428 0.1085 39 1 5.4927 -6.3608 -0.1634 40 1 4.3696 -5.9390 -2.4080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090476993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:58 Heat of formation + Delta-G solvation = -17.726546 kcal Electronic energy + Delta-G solvation = -24485.886762 eV Core-core repulsion = 20915.684387 eV Total energy + Delta-G solvation = -3570.202374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40561 -40.84878 -39.04347 -36.89814 -35.54929 -33.94433 -33.55044 -32.22902 -30.96130 -29.95426 -28.88682 -27.14916 -24.55397 -23.75986 -23.51487 -21.86710 -20.76433 -20.17354 -19.50323 -18.68018 -17.94079 -17.55471 -16.81518 -16.57823 -16.30243 -15.83165 -15.68772 -15.41013 -15.20797 -14.88450 -14.75712 -14.31049 -13.89203 -13.75156 -13.71580 -13.50936 -13.20432 -12.98599 -12.94137 -12.68977 -12.30003 -12.20577 -11.99354 -11.94508 -11.79774 -11.23990 -10.97976 -10.77740 -10.51374 -10.47076 -10.06540 -9.69463 -8.67286 -7.86600 -5.31860 0.54231 1.10503 1.49424 1.52835 1.58085 1.80200 2.36736 2.51139 2.52418 3.20975 3.30279 3.50960 3.70506 3.77247 3.95071 4.12472 4.20762 4.28810 4.36188 4.44592 4.49401 4.60128 4.74470 4.78714 4.89804 4.94145 5.01112 5.04415 5.11533 5.18743 5.46826 5.48690 5.62436 5.67258 5.74992 6.24818 6.38210 6.48868 6.73449 6.94069 7.15362 7.39394 7.84895 8.35465 9.19303 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.004465 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.490166 B = 6270.186861 C = 6756.184755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.119 3.881 3 N -0.322 5.322 4 N -0.446 5.446 5 H 0.461 0.539 6 C 0.132 3.868 7 C -0.318 4.318 8 C 0.591 3.409 9 O -0.583 6.583 10 N -0.698 5.698 11 C 0.171 3.829 12 H 0.074 0.926 13 C -0.140 4.140 14 C 0.185 3.815 15 N -0.601 5.601 16 C -0.264 4.264 17 H 0.072 0.928 18 C -0.044 4.044 19 N -0.931 5.931 20 Si 0.962 3.038 21 H -0.299 1.299 22 H -0.280 1.280 23 H -0.274 1.274 24 C 0.119 3.881 25 C 0.095 3.905 26 H 0.068 0.932 27 O -0.570 6.570 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.218 0.782 32 H 0.404 0.596 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.005 0.995 37 H 0.249 0.751 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 7.701 -11.049 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 N -0.145 5.145 4 N -0.152 5.152 5 H 0.309 0.691 6 C -0.023 4.023 7 C -0.333 4.333 8 C 0.380 3.620 9 O -0.465 6.465 10 N -0.348 5.348 11 C 0.066 3.934 12 H 0.092 0.908 13 C -0.180 4.180 14 C 0.060 3.940 15 N -0.325 5.325 16 C -0.394 4.394 17 H 0.090 0.910 18 C -0.240 4.240 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.225 1.225 22 H -0.206 1.206 23 H -0.199 1.199 24 C -0.007 4.007 25 C 0.034 3.966 26 H 0.086 0.914 27 O -0.377 6.377 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.234 0.766 32 H 0.240 0.760 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.056 9.252 -10.771 14.347 hybrid contribution 1.609 -1.600 0.940 2.456 sum -0.447 7.652 -9.831 12.466 Atomic orbital electron populations 1.20319 0.85215 1.04023 1.03747 1.22725 0.98140 0.88895 0.95041 1.77064 0.87440 1.22505 1.27536 1.46089 1.07584 1.05616 1.55873 0.69089 1.23596 0.99087 0.85926 0.93674 1.20341 0.93704 0.93790 1.25436 1.17496 0.85301 0.84354 0.74886 1.90671 1.17628 1.84894 1.53265 1.45652 1.09724 1.05197 1.74272 1.20658 0.96975 0.80428 0.95376 0.90795 1.22317 0.99140 1.00986 0.95595 1.20379 0.84981 0.93552 0.95115 1.44136 1.34888 1.46151 1.07357 1.19470 1.27052 1.02378 0.90471 0.91034 1.25703 1.00881 0.98451 0.98968 1.70158 1.54115 1.24303 1.09068 0.85435 0.78507 0.79750 0.77293 1.22532 1.20645 1.19940 1.21677 0.95260 0.98967 0.84790 1.22341 0.95447 0.96981 0.81807 0.91395 1.86467 1.62773 1.63893 1.24557 0.90012 0.89442 0.89994 0.76584 0.75991 0.92447 0.91414 0.93060 0.97652 0.94219 0.95250 0.91261 0.75538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.90 9.92 71.24 0.71 -1.19 16 2 C 0.12 3.42 7.26 43.52 0.32 3.73 16 3 N -0.32 -8.41 12.63 -46.67 -0.59 -9.00 16 4 N -0.45 -8.51 7.29 -56.31 -0.41 -8.92 16 5 H 0.46 4.99 8.96 -213.43 -1.91 3.08 16 6 C 0.13 2.76 11.52 84.28 0.97 3.73 16 7 C -0.32 -9.21 6.13 -20.16 -0.12 -9.34 16 8 C 0.59 20.18 7.78 86.66 0.67 20.85 16 9 O -0.58 -23.16 14.58 -4.05 -0.06 -23.22 16 10 N -0.70 -22.29 4.15 -445.67 -1.85 -24.14 16 11 C 0.17 5.83 2.47 45.02 0.11 5.94 16 12 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -5.42 5.75 30.53 0.18 -5.25 16 14 C 0.19 8.50 5.03 86.22 0.43 8.94 16 15 N -0.60 -27.12 3.00 -699.93 -2.10 -29.22 16 16 C -0.26 -13.35 9.58 84.03 0.81 -12.55 16 17 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 18 C -0.04 -2.32 4.91 84.86 0.42 -1.91 16 19 N -0.93 -52.55 11.19 21.65 0.24 -52.31 16 20 Si 0.96 42.78 29.59 68.60 2.03 44.81 16 21 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.12 4.13 5.85 86.36 0.50 4.64 16 25 C 0.10 2.90 3.36 30.67 0.10 3.00 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 O -0.57 -14.52 13.21 -148.98 -1.97 -16.49 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.33 6.55 -2.39 -0.02 2.31 16 31 H 0.22 3.00 7.46 -2.91 -0.02 2.98 16 32 H 0.40 11.62 5.79 -92.70 -0.54 11.08 16 33 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.05 2.74 6.04 -2.38 -0.01 2.73 16 36 H 0.01 0.26 7.74 -2.38 -0.02 0.24 16 37 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.03 0.99 6.64 -2.38 -0.02 0.97 16 39 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 40 H 0.39 6.44 9.08 -74.06 -0.67 5.77 16 Total: -1.00 -70.45 327.20 -1.63 -72.07 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -2.02 Total: 25.81 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 5.09 Total: 20.60 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -4.71 Total: -123.59 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.03 Total: -39.71 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.45 -1.63 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090476993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.346 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds