Wall clock time and date at job start Tue Mar 31 2020 03:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00287 * 2 1 4 4 H 1.48503 * 109.47135 * 270.00419 * 3 2 1 5 5 H 1.48505 * 109.47105 * 30.00096 * 3 2 1 6 6 H 1.48495 * 109.47702 * 150.00052 * 3 2 1 7 7 C 1.38821 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99727 * 163.07054 * 7 2 1 9 9 N 1.36933 * 119.99995 * 343.07094 * 7 2 1 10 10 C 1.46919 * 120.63063 * 151.82513 * 9 7 2 11 11 C 1.53192 * 108.77600 * 126.41376 * 10 9 7 12 12 C 1.53043 * 109.31262 * 54.63560 * 11 10 9 13 13 H 1.09001 * 109.45866 * 58.65360 * 12 11 10 14 14 N 1.46502 * 109.44825 * 178.62463 * 12 11 10 15 15 C 1.34782 * 119.99556 * 275.03176 * 14 12 11 16 16 O 1.21278 * 120.00263 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99561 * 180.02562 * 15 14 12 18 18 C 1.50705 * 109.46812 * 179.97438 * 17 15 14 19 19 C 1.34663 * 126.58866 * 274.68426 * 18 17 15 20 20 N 1.34135 * 108.01938 * 179.87627 * 19 18 17 21 21 C 1.30501 * 109.25138 * 0.39886 * 20 19 18 22 22 N 1.35037 * 108.70434 * 359.75203 * 21 20 19 23 23 H 0.97003 * 126.40326 * 180.02562 * 22 21 20 24 24 C 1.53045 * 109.53592 * 298.63792 * 12 11 10 25 25 H 1.09004 * 109.49554 * 301.37656 * 24 12 11 26 26 O 1.42898 * 109.49551 * 181.31939 * 24 12 11 27 27 C 1.46932 * 120.63007 * 331.84826 * 9 7 2 28 28 H 0.97002 * 120.00131 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.59008 * 246.19702 * 10 9 7 30 30 H 1.08999 * 109.58965 * 6.48695 * 10 9 7 31 31 H 1.08999 * 109.49533 * 294.68608 * 11 10 9 32 32 H 1.09001 * 109.50135 * 174.58301 * 11 10 9 33 33 H 0.96992 * 120.00339 * 95.03811 * 14 12 11 34 34 H 1.08994 * 109.46809 * 299.99712 * 17 15 14 35 35 H 1.08994 * 109.47124 * 59.99970 * 17 15 14 36 36 H 1.08004 * 125.99383 * 0.02651 * 19 18 17 37 37 H 1.07998 * 125.64793 * 179.73625 * 21 20 19 38 38 H 0.96695 * 114.00208 * 179.97438 * 26 24 12 39 39 H 1.09003 * 109.58621 * 113.79989 * 27 9 7 40 40 H 1.08997 * 109.70283 * 353.44141 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3626 0.3443 10 6 1.8138 -3.6527 -0.2008 11 6 2.0674 -4.6180 0.9613 12 6 0.8120 -4.7022 1.8326 13 1 -0.0282 -5.0419 1.2269 14 7 1.0399 -5.6497 2.9264 15 6 0.8361 -6.9674 2.7299 16 8 0.4635 -7.3687 1.6478 17 6 1.0700 -7.9420 3.8553 18 6 0.7719 -9.3404 3.3789 19 6 -0.4333 -9.9408 3.3562 20 7 -0.2718 -11.1767 2.8605 21 6 0.9889 -11.3677 2.5830 22 7 1.6750 -10.2463 2.8917 23 1 2.6295 -10.1083 2.7873 24 6 0.4974 -3.3209 2.4117 25 1 1.3469 -2.9700 2.9977 26 8 -0.6570 -3.4066 3.2495 27 6 0.2261 -2.3409 1.2660 28 1 -0.4850 0.8400 0.0004 29 1 1.0402 -4.0599 -0.8518 30 1 2.7332 -3.5125 -0.7693 31 1 2.9023 -4.2547 1.5605 32 1 2.3041 -5.6067 0.5681 33 1 1.3375 -5.3287 3.7920 34 1 2.1093 -7.8816 4.1781 35 1 0.4151 -7.6960 4.6911 36 1 -1.3666 -9.5031 3.6783 37 1 1.4134 -12.2729 2.1745 38 1 -0.9145 -2.5658 3.6517 39 1 -0.6771 -2.6411 0.7346 40 1 0.0967 -1.3360 1.6677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090594164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:24 Heat of formation + Delta-G solvation = -34.799534 kcal Electronic energy + Delta-G solvation = -23762.163721 eV Core-core repulsion = 20191.221007 eV Total energy + Delta-G solvation = -3570.942715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.94610 -40.97560 -39.35275 -36.88536 -35.78423 -34.09747 -33.67098 -32.76747 -31.16676 -30.50376 -28.18061 -26.72470 -24.20069 -23.53033 -22.51986 -22.04451 -21.39819 -21.03652 -19.11816 -18.69807 -18.10973 -17.95244 -17.30782 -16.64900 -16.29968 -15.84694 -15.60903 -15.38492 -15.24168 -14.98151 -14.76779 -14.42960 -14.37335 -13.94284 -13.86276 -13.60777 -13.35796 -13.06725 -12.99539 -12.65996 -12.53931 -12.08755 -12.03459 -11.88906 -11.39773 -11.05978 -10.97036 -10.93649 -10.78892 -10.61253 -10.01368 -9.31405 -8.77039 -7.91738 -5.39610 1.06098 1.48067 1.49745 1.59472 1.69329 2.11643 2.28985 2.45892 2.49027 3.12144 3.26587 3.62826 3.66887 3.88410 3.97837 4.05128 4.13230 4.18638 4.30846 4.41623 4.45680 4.57205 4.63254 4.70078 4.72735 4.89262 4.94523 5.02785 5.15131 5.27633 5.32067 5.51564 5.56125 5.62831 5.79082 6.32273 6.58317 6.65557 6.83583 7.09088 7.15325 7.34158 7.76350 8.29599 9.14937 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.038938 B = 0.003143 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.915900 B = 8905.402021 C = 9196.421790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.140 3.860 11 C -0.120 4.120 12 C 0.170 3.830 13 H 0.049 0.951 14 N -0.703 5.703 15 C 0.508 3.492 16 O -0.584 6.584 17 C -0.053 4.053 18 C -0.006 4.006 19 C -0.044 4.044 20 N -0.542 5.542 21 C 0.188 3.812 22 N -0.554 5.554 23 H 0.434 0.566 24 C 0.094 3.906 25 H 0.070 0.930 26 O -0.573 6.573 27 C 0.156 3.844 28 H 0.252 0.748 29 H 0.003 0.997 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.415 0.585 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.244 0.756 38 H 0.392 0.608 39 H -0.009 1.009 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 -15.189 12.697 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.160 4.160 12 C 0.065 3.935 13 H 0.067 0.933 14 N -0.354 5.354 15 C 0.295 3.705 16 O -0.464 6.464 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.191 4.191 20 N -0.262 5.262 21 C -0.096 4.096 22 N -0.158 5.158 23 H 0.275 0.725 24 C 0.033 3.967 25 H 0.088 0.912 26 O -0.380 6.380 27 C 0.029 3.971 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.260 0.740 38 H 0.241 0.759 39 H 0.009 0.991 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.742 -16.539 11.656 21.328 hybrid contribution 0.834 2.456 -0.117 2.596 sum 7.575 -14.083 11.539 19.720 Atomic orbital electron populations 1.70189 1.06789 1.26127 1.54984 1.25869 0.96023 1.01700 1.00807 0.85240 0.78218 0.79222 0.77504 1.21515 1.21792 1.19018 1.19551 0.93081 0.85500 1.41564 0.90905 1.44255 1.35713 1.02509 1.50427 1.21046 0.97699 0.85854 0.94001 1.22168 0.97128 0.99287 0.97407 1.20587 0.97237 0.87300 0.88404 0.93308 1.45834 1.68385 1.05742 1.15416 1.21209 0.76229 0.83231 0.89819 1.90737 1.47714 1.78988 1.28934 1.20110 1.07581 0.85239 0.96422 1.20689 0.90671 0.93580 1.07310 1.22227 0.97866 0.92291 1.06722 1.70211 1.18454 1.18869 1.18653 1.25649 0.87566 0.93402 1.02954 1.43180 1.11736 1.12357 1.48530 0.72524 1.22531 0.88039 0.94443 0.91733 0.91232 1.86391 1.47872 1.38179 1.65532 1.21226 0.88203 0.98144 0.89543 0.93912 0.97873 0.91517 0.90328 0.91279 0.74768 0.84297 0.83941 0.81952 0.73995 0.75864 0.99128 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.71 11.19 21.65 0.24 -53.46 16 2 C -0.05 -2.60 4.92 84.87 0.42 -2.18 16 3 Si 0.97 42.80 29.59 68.60 2.03 44.83 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.27 -14.08 9.58 84.04 0.81 -13.28 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 9 N -0.60 -29.48 2.99 -699.11 -2.09 -31.57 16 10 C 0.14 5.86 6.52 86.36 0.56 6.42 16 11 C -0.12 -4.01 5.65 30.67 0.17 -3.84 16 12 C 0.17 5.77 2.12 45.02 0.10 5.86 16 13 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 14 N -0.70 -17.31 4.92 -442.38 -2.18 -19.48 16 15 C 0.51 13.00 7.79 87.66 0.68 13.68 16 16 O -0.58 -21.45 15.70 -3.02 -0.05 -21.50 16 17 C -0.05 -0.79 6.26 29.10 0.18 -0.61 16 18 C -0.01 -0.11 5.73 40.95 0.23 0.12 16 19 C -0.04 -1.14 11.79 83.52 0.98 -0.15 16 20 N -0.54 -14.67 11.25 -200.31 -2.25 -16.92 16 21 C 0.19 3.47 13.04 180.26 2.35 5.82 16 22 N -0.55 -8.81 6.15 -186.50 -1.15 -9.96 16 23 H 0.43 3.73 8.96 -92.71 -0.83 2.90 16 24 C 0.09 3.26 3.14 30.67 0.10 3.36 16 25 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 26 O -0.57 -17.99 13.16 -148.98 -1.96 -19.95 16 27 C 0.16 7.24 4.93 86.36 0.43 7.67 16 28 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.42 7.32 8.60 -92.71 -0.80 6.52 16 34 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.39 9.66 9.08 -74.06 -0.67 8.98 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 Total: -1.00 -79.59 335.27 -1.60 -81.19 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -1.21 Total: 23.96 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 7.01 Total: 22.87 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -7.43 Total: -131.40 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -2.01 Total: -41.46 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -79.59 -1.60 -81.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090594164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.392 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds