Wall clock time and date at job start Tue Mar 31 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99478 * 2 1 4 4 H 1.48503 * 109.47169 * 272.78914 * 3 2 1 5 5 H 1.48491 * 109.47537 * 32.79152 * 3 2 1 6 6 H 1.48507 * 109.47041 * 152.79301 * 3 2 1 7 7 C 1.38810 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00563 * 339.37571 * 7 2 1 9 9 N 1.36940 * 119.99951 * 159.36709 * 7 2 1 10 10 C 1.46920 * 120.63197 * 152.39448 * 9 7 2 11 11 C 1.53196 * 108.77569 * 126.66623 * 10 9 7 12 12 C 1.53037 * 109.31158 * 54.63988 * 11 10 9 13 13 H 1.09000 * 109.45272 * 58.64371 * 12 11 10 14 14 N 1.46503 * 109.45999 * 178.61589 * 12 11 10 15 15 C 1.34777 * 119.99740 * 275.06391 * 14 12 11 16 16 O 1.21288 * 119.99955 * 359.97438 * 15 14 12 17 17 C 1.50696 * 119.99834 * 179.97438 * 15 14 12 18 18 C 1.50703 * 109.47126 * 179.97438 * 17 15 14 19 19 N 1.30505 * 125.64937 * 304.69340 * 18 17 15 20 20 C 1.34131 * 109.25634 * 179.89119 * 19 18 17 21 21 C 1.34670 * 108.01951 * 0.36722 * 20 19 18 22 22 N 1.35045 * 125.65055 * 124.99865 * 18 17 15 23 23 H 0.96991 * 126.39528 * 359.97438 * 22 18 17 24 24 C 1.53041 * 109.53606 * 298.63274 * 12 11 10 25 25 H 1.08998 * 109.49793 * 301.41228 * 24 12 11 26 26 O 1.42904 * 109.50084 * 181.32060 * 24 12 11 27 27 C 1.46931 * 120.62860 * 332.67569 * 9 7 2 28 28 H 0.96998 * 120.00529 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58736 * 246.45476 * 10 9 7 30 30 H 1.08996 * 109.58340 * 6.87934 * 10 9 7 31 31 H 1.08996 * 109.49713 * 294.68105 * 11 10 9 32 32 H 1.08998 * 109.52453 * 174.60316 * 11 10 9 33 33 H 0.97001 * 120.00022 * 95.06587 * 14 12 11 34 34 H 1.08990 * 109.47250 * 300.00003 * 17 15 14 35 35 H 1.09001 * 109.47024 * 60.00679 * 17 15 14 36 36 H 1.07991 * 125.98974 * 180.12119 * 20 19 18 37 37 H 1.07994 * 126.59169 * 179.73804 * 21 20 19 38 38 H 0.96701 * 114.00363 * 180.16412 * 26 24 12 39 39 H 1.08999 * 109.58561 * 353.12176 * 27 9 7 40 40 H 1.09001 * 109.58427 * 113.54834 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4385 2.0806 -1.3984 5 1 1.4783 2.6349 0.7582 6 1 3.5760 1.4240 0.6402 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3304 9 7 3.3138 -1.2402 -0.4173 10 6 4.2363 -2.2598 0.1003 11 6 4.8825 -2.9866 -1.0834 12 6 5.5365 -1.9605 -2.0115 13 1 6.2821 -1.3918 -1.4559 14 7 6.1839 -2.6546 -3.1275 15 6 7.4352 -3.1352 -2.9872 16 8 8.0254 -2.9928 -1.9372 17 6 8.1010 -3.8497 -4.1349 18 6 9.4839 -4.2835 -3.7222 19 7 10.4178 -3.5021 -3.2526 20 6 11.5136 -4.2301 -2.9913 21 6 11.2516 -5.5098 -3.3187 22 7 9.9641 -5.5443 -3.7825 23 1 9.4861 -6.3278 -4.0960 24 6 4.4689 -1.0077 -2.5542 25 1 3.7096 -1.5785 -3.0888 26 8 5.0755 -0.0689 -3.4447 27 6 3.8180 -0.2584 -1.3873 28 1 -0.4851 0.8400 -0.0004 29 1 5.0095 -1.7815 0.7016 30 1 3.6853 -2.9746 0.7113 31 1 4.1193 -3.5389 -1.6317 32 1 5.6396 -3.6795 -0.7162 33 1 5.7120 -2.7681 -3.9673 34 1 7.5119 -4.7248 -4.4089 35 1 8.1717 -3.1770 -4.9897 36 1 12.4444 -3.8549 -2.5923 37 1 11.9274 -6.3477 -3.2326 38 1 4.4564 0.5690 -3.8253 39 1 2.9909 0.3472 -1.7576 40 1 4.5571 0.3830 -0.9072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090674191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:15 Heat of formation + Delta-G solvation = -28.490126 kcal Electronic energy + Delta-G solvation = -23867.113221 eV Core-core repulsion = 20296.444102 eV Total energy + Delta-G solvation = -3570.669118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93250 -41.02046 -39.48487 -37.02599 -35.80222 -34.13657 -33.42071 -33.08278 -31.67338 -30.67652 -28.43923 -26.69212 -24.65740 -23.45805 -22.47777 -22.13597 -21.37438 -21.02285 -19.13564 -18.77340 -18.28460 -17.97319 -17.61146 -16.62781 -16.41334 -16.12192 -15.71291 -15.34894 -15.09694 -15.01749 -14.82536 -14.64536 -14.49963 -14.14538 -13.98426 -13.83914 -13.72345 -13.09973 -13.02455 -12.69025 -12.49397 -12.36078 -12.00256 -11.73423 -11.40584 -11.09877 -10.96936 -10.96019 -10.83314 -10.64484 -10.01178 -9.31412 -9.02773 -8.19972 -5.53535 1.11255 1.24551 1.41084 1.48881 1.73086 1.97061 2.28227 2.36738 2.52880 2.89345 3.13716 3.33285 3.41316 3.78666 3.98367 4.04967 4.07007 4.09383 4.25652 4.35296 4.43197 4.47125 4.57492 4.63509 4.69709 4.79511 4.82904 4.90267 4.93481 5.00346 5.17138 5.31111 5.51716 5.81317 5.85594 6.09913 6.55137 6.67896 6.73422 6.87348 7.25451 7.37500 7.55014 7.95310 8.99342 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.035807 B = 0.003381 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.792858 B = 8279.642550 C = 8470.361189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.027 4.027 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.310 1.310 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.613 5.613 10 C 0.143 3.857 11 C -0.123 4.123 12 C 0.169 3.831 13 H 0.057 0.943 14 N -0.704 5.704 15 C 0.512 3.488 16 O -0.571 6.571 17 C -0.046 4.046 18 C 0.201 3.799 19 N -0.518 5.518 20 C -0.071 4.071 21 C -0.035 4.035 22 N -0.553 5.553 23 H 0.436 0.564 24 C 0.099 3.901 25 H 0.076 0.924 26 O -0.570 6.570 27 C 0.096 3.904 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.174 0.826 37 H 0.217 0.783 38 H 0.394 0.606 39 H 0.067 0.933 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.603 -12.774 -14.363 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.223 4.223 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.239 1.239 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.079 0.921 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.163 4.163 12 C 0.064 3.936 13 H 0.076 0.924 14 N -0.356 5.356 15 C 0.298 3.702 16 O -0.449 6.449 17 C -0.087 4.087 18 C -0.064 4.064 19 N -0.238 5.238 20 C -0.219 4.219 21 C -0.169 4.169 22 N -0.158 5.158 23 H 0.278 0.722 24 C 0.037 3.963 25 H 0.094 0.906 26 O -0.376 6.376 27 C -0.030 4.030 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.191 0.809 37 H 0.234 0.766 38 H 0.243 0.757 39 H 0.085 0.915 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 18.391 -12.062 -13.337 25.721 hybrid contribution -0.787 0.345 -0.034 0.860 sum 17.605 -11.717 -13.370 25.020 Atomic orbital electron populations 1.69933 1.07154 1.27311 1.55178 1.25829 0.95764 1.00470 1.00195 0.86069 0.78274 0.80867 0.78099 1.19103 1.23886 1.19958 1.18889 0.86159 0.93900 1.39008 0.92064 1.44426 1.07910 1.34491 1.47069 1.21094 0.91801 0.90868 0.94513 1.22194 0.99674 0.97607 0.96870 1.20593 0.93149 0.91955 0.87947 0.92438 1.45740 1.15378 1.57718 1.16774 1.20831 0.81001 0.78816 0.89506 1.90761 1.64451 1.58535 1.31159 1.20034 0.87708 1.03848 0.97070 1.22671 0.97267 0.81698 1.04776 1.70173 1.01559 1.35414 1.16689 1.22756 0.98822 0.91812 1.08488 1.23281 0.87418 1.00828 1.05418 1.43183 1.12758 1.10152 1.49715 0.72241 1.22389 0.93646 0.90081 0.90140 0.90603 1.86443 1.40411 1.47809 1.62982 1.22057 0.97185 0.92713 0.91030 0.92744 0.95787 0.91261 0.90459 0.90840 0.74730 0.82919 0.84315 0.80870 0.76644 0.75662 0.91541 0.95586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 13.97 21.65 0.30 -57.56 16 2 C -0.03 -1.54 5.23 84.86 0.44 -1.09 16 3 Si 0.94 45.72 24.34 68.60 1.67 47.38 16 4 H -0.26 -11.73 6.62 99.48 0.66 -11.08 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 6 H -0.27 -13.45 6.64 99.48 0.66 -12.79 16 7 C -0.25 -13.75 10.04 84.03 0.84 -12.90 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.61 -28.24 2.77 -699.10 -1.94 -30.17 16 10 C 0.14 5.60 6.52 86.36 0.56 6.17 16 11 C -0.12 -3.96 5.65 30.67 0.17 -3.79 16 12 C 0.17 5.40 2.12 45.02 0.10 5.49 16 13 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 14 N -0.70 -16.92 4.92 -442.40 -2.18 -19.10 16 15 C 0.51 13.50 7.78 87.66 0.68 14.19 16 16 O -0.57 -21.57 15.23 -3.05 -0.05 -21.61 16 17 C -0.05 -0.72 6.33 29.10 0.18 -0.53 16 18 C 0.20 4.39 6.95 138.13 0.96 5.35 16 19 N -0.52 -15.48 10.60 -188.13 -1.99 -17.47 16 20 C -0.07 -1.66 11.87 83.52 0.99 -0.67 16 21 C -0.03 -0.52 12.04 83.09 1.00 0.48 16 22 N -0.55 -7.75 6.15 -186.26 -1.15 -8.90 16 23 H 0.44 2.36 8.96 -92.72 -0.83 1.53 16 24 C 0.10 3.17 3.14 30.67 0.10 3.27 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 O -0.57 -16.19 13.16 -148.98 -1.96 -18.16 16 27 C 0.10 3.98 3.82 86.36 0.33 4.31 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.42 7.01 8.60 -92.71 -0.80 6.21 16 34 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.39 8.35 9.08 -74.06 -0.67 7.68 16 39 H 0.07 2.89 4.51 -2.39 -0.01 2.88 16 40 H 0.03 1.14 7.06 -2.39 -0.02 1.12 16 Total: -1.00 -84.40 328.03 -2.22 -86.63 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -1.30 Total: 18.70 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.36 Total: 20.26 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -6.95 Total: -133.20 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.01 Total: -39.77 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.38 kcal Total: -84.40 -2.22 -86.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090674191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.135 kcal (2) G-P(sol) polarization free energy of solvation -84.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds