Wall clock time and date at job start Tue Mar 31 2020 03:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47007 * 272.89904 * 3 2 1 5 5 H 1.48509 * 109.47298 * 32.89395 * 3 2 1 6 6 H 1.48502 * 109.47556 * 152.89585 * 3 2 1 7 7 C 1.38815 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00158 * 339.36491 * 7 2 1 9 9 N 1.36936 * 119.99751 * 159.36814 * 7 2 1 10 10 C 1.46930 * 120.63066 * 332.60084 * 9 7 2 11 11 C 1.53185 * 108.77567 * 233.63123 * 10 9 7 12 12 C 1.53041 * 109.31448 * 305.36304 * 11 10 9 13 13 H 1.09002 * 109.46134 * 181.38118 * 12 11 10 14 14 N 1.46493 * 109.45036 * 301.35193 * 12 11 10 15 15 C 1.34772 * 120.00165 * 275.03367 * 14 12 11 16 16 O 1.21288 * 120.00168 * 359.97438 * 15 14 12 17 17 C 1.50707 * 120.00276 * 179.97438 * 15 14 12 18 18 N 1.46496 * 109.47088 * 179.97438 * 17 15 14 19 19 C 1.36878 * 126.39998 * 90.00080 * 18 17 15 20 20 C 1.34670 * 106.82122 * 179.97438 * 19 18 17 21 21 N 1.34120 * 108.01898 * 0.02562 * 20 19 18 22 22 C 1.30504 * 109.25619 * 359.72193 * 21 20 19 23 23 C 1.53046 * 109.53652 * 61.36776 * 12 11 10 24 24 H 1.09000 * 109.50067 * 58.61422 * 23 12 11 25 25 O 1.42898 * 109.49691 * 178.68720 * 23 12 11 26 26 C 1.46930 * 120.63240 * 152.62195 * 9 7 2 27 27 H 0.96994 * 119.99796 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58654 * 353.41807 * 10 9 7 29 29 H 1.08993 * 109.58933 * 113.69991 * 10 9 7 30 30 H 1.09001 * 109.50206 * 185.41066 * 11 10 9 31 31 H 1.09006 * 109.49872 * 65.31237 * 11 10 9 32 32 H 0.97008 * 120.00070 * 95.02709 * 14 12 11 33 33 H 1.08997 * 109.47058 * 300.00278 * 17 15 14 34 34 H 1.08999 * 109.46790 * 60.00027 * 17 15 14 35 35 H 1.08007 * 126.58841 * 359.96675 * 19 18 17 36 36 H 1.08003 * 125.98648 * 179.97438 * 20 19 18 37 37 H 1.07999 * 125.64758 * 180.29183 * 22 21 20 38 38 H 0.96702 * 113.99624 * 179.97438 * 25 23 12 39 39 H 1.08998 * 109.58439 * 6.58434 * 26 9 7 40 40 H 1.08994 * 109.70109 * 246.22656 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4364 2.0817 -1.3983 5 1 1.4796 2.6342 0.7604 6 1 3.5771 1.4232 0.6379 7 6 2.0103 -1.2022 0.0005 8 1 1.5222 -2.1074 0.3306 9 7 3.3137 -1.2404 -0.4173 10 6 3.8176 -0.2597 -1.3884 11 6 4.4620 -1.0102 -2.5581 12 6 5.5285 -1.9667 -2.0197 13 1 6.0057 -2.4842 -2.8520 14 7 6.5356 -1.2057 -1.2762 15 6 7.5645 -0.6311 -1.9302 16 8 7.6569 -0.7443 -3.1342 17 6 8.6002 0.1523 -1.1654 18 7 9.6056 0.6711 -2.0961 19 6 9.5671 1.8759 -2.7446 20 6 10.6822 1.9498 -3.4960 21 7 11.3822 0.8206 -3.3118 22 6 10.7461 0.0524 -2.4702 23 6 4.8746 -2.9914 -1.0898 24 1 4.1082 -3.5413 -1.6359 25 8 5.8662 -3.9026 -0.6117 26 6 4.2350 -2.2632 0.0965 27 1 -0.4849 0.8400 -0.0004 28 1 2.9911 0.3488 -1.7557 29 1 4.5585 0.3808 -0.9101 30 1 4.9246 -0.2954 -3.2385 31 1 3.6991 -1.5785 -3.0902 32 1 6.4619 -1.1153 -0.3132 33 1 8.1193 0.9831 -0.6492 34 1 9.0824 -0.4985 -0.4360 35 1 8.7914 2.6236 -2.6684 36 1 10.9631 2.7735 -4.1355 37 1 11.0761 -0.9184 -2.1310 38 1 5.5216 -4.5812 -0.0151 39 1 3.6838 -2.9767 0.7091 40 1 5.0119 -1.7898 0.6968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090847623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:54 Heat of formation + Delta-G solvation = -10.049205 kcal Electronic energy + Delta-G solvation = -24359.290102 eV Core-core repulsion = 20789.420642 eV Total energy + Delta-G solvation = -3569.869460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.99312 -41.28597 -39.49246 -37.08108 -35.71465 -34.94829 -33.83747 -32.16181 -30.80801 -30.38907 -28.70078 -27.01564 -24.25942 -23.85132 -22.78446 -22.27759 -21.63145 -20.57046 -19.12553 -18.67235 -18.31714 -18.02569 -17.28403 -16.68719 -16.55466 -16.07649 -15.96899 -15.50265 -15.41735 -15.00662 -14.87233 -14.65912 -14.41572 -14.13293 -14.05084 -13.92032 -13.46917 -13.27590 -13.14674 -12.97174 -12.81724 -12.18569 -11.84984 -11.62335 -11.45570 -11.38143 -11.18864 -10.98869 -10.68467 -10.47313 -10.15338 -9.43066 -8.97417 -8.18390 -5.52216 1.03028 1.30506 1.39506 1.47599 1.49078 1.72199 2.22265 2.30640 2.40247 2.91859 3.11431 3.36796 3.60441 3.77016 3.83589 3.87454 3.96296 4.02112 4.10271 4.16207 4.21571 4.29236 4.50149 4.57784 4.69714 4.77407 4.82458 4.85723 4.91259 5.05565 5.18095 5.28693 5.41759 5.80909 5.82589 6.10703 6.19376 6.46585 6.79831 6.91973 7.11552 7.13754 7.57574 7.95576 9.00877 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.004561 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.246194 B = 6137.806003 C = 7111.390570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.032 4.032 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.315 1.315 6 H -0.247 1.247 7 C -0.250 4.250 8 H 0.058 0.942 9 N -0.611 5.611 10 C 0.127 3.873 11 C -0.136 4.136 12 C 0.172 3.828 13 H 0.076 0.924 14 N -0.697 5.697 15 C 0.495 3.505 16 O -0.574 6.574 17 C 0.089 3.911 18 N -0.446 5.446 19 C -0.049 4.049 20 C -0.056 4.056 21 N -0.536 5.536 22 C 0.185 3.815 23 C 0.095 3.905 24 H 0.063 0.937 25 O -0.567 6.567 26 C 0.120 3.880 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.192 0.808 36 H 0.180 0.820 37 H 0.228 0.772 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.850 -1.389 1.684 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.772 3.228 4 H -0.212 1.212 5 H -0.244 1.244 6 H -0.171 1.171 7 C -0.379 4.379 8 H 0.075 0.925 9 N -0.337 5.337 10 C 0.002 3.998 11 C -0.176 4.176 12 C 0.066 3.934 13 H 0.094 0.906 14 N -0.350 5.350 15 C 0.281 3.719 16 O -0.453 6.453 17 C -0.036 4.036 18 N -0.128 5.128 19 C -0.182 4.182 20 C -0.202 4.202 21 N -0.255 5.255 22 C -0.097 4.097 23 C 0.033 3.967 24 H 0.081 0.919 25 O -0.374 6.374 26 C -0.006 4.006 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.209 0.791 36 H 0.198 0.802 37 H 0.244 0.756 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.823 -1.287 0.214 18.868 hybrid contribution -1.758 0.730 0.842 2.081 sum 17.066 -0.557 1.056 17.107 Atomic orbital electron populations 1.69965 1.07564 1.27258 1.55343 1.25893 0.95723 1.01011 1.00128 0.85979 0.79400 0.80323 0.77072 1.21163 1.24399 1.17087 1.18846 0.86613 0.93637 1.38838 0.92463 1.44321 1.07795 1.34285 1.47274 1.21313 0.96637 0.91972 0.89853 1.22269 0.97849 0.99285 0.98245 1.20621 0.87869 0.90674 0.94222 0.90597 1.45821 1.24525 1.52692 1.11953 1.21296 0.82745 0.79682 0.88171 1.90771 1.76769 1.61578 1.16220 1.21970 0.88701 1.02072 0.90899 1.45144 1.17615 1.15060 1.34995 1.23095 1.02976 0.90944 1.01187 1.22607 0.94598 0.98443 1.04598 1.70230 1.32610 1.05169 1.17520 1.25478 0.85320 1.00955 0.97981 1.22293 0.89479 0.89734 0.95154 0.91876 1.86437 1.36809 1.45448 1.68736 1.21755 0.92743 0.91572 0.94513 0.92994 0.93508 0.94004 0.91407 0.91142 0.74858 0.83222 0.81876 0.79068 0.80244 0.75620 0.75253 0.91101 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.36 13.97 21.65 0.30 -57.06 16 2 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 3 Si 0.94 43.03 24.34 68.60 1.67 44.70 16 4 H -0.28 -12.66 6.62 99.48 0.66 -12.00 16 5 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.25 -10.11 6.64 99.48 0.66 -9.45 16 7 C -0.25 -12.83 10.03 84.03 0.84 -11.99 16 8 H 0.06 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.61 -24.55 2.77 -699.09 -1.94 -26.49 16 10 C 0.13 4.76 3.95 86.36 0.34 5.10 16 11 C -0.14 -4.39 5.77 30.67 0.18 -4.22 16 12 C 0.17 4.73 2.47 45.02 0.11 4.84 16 13 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 14 N -0.70 -15.49 4.16 -442.40 -1.84 -17.33 16 15 C 0.50 11.31 7.86 87.66 0.69 12.00 16 16 O -0.57 -18.87 16.09 -3.06 -0.05 -18.92 16 17 C 0.09 1.21 6.63 85.64 0.57 1.78 16 18 N -0.45 -8.89 2.24 -533.15 -1.19 -10.08 16 19 C -0.05 -1.05 11.58 83.09 0.96 -0.09 16 20 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 21 N -0.54 -14.84 11.25 -200.31 -2.25 -17.10 16 22 C 0.19 4.11 12.56 180.26 2.26 6.37 16 23 C 0.09 2.43 3.36 30.67 0.10 2.54 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 O -0.57 -11.76 13.21 -148.98 -1.97 -13.73 16 26 C 0.12 3.54 5.84 86.36 0.50 4.05 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.05 2.04 4.50 -2.38 -0.01 2.03 16 29 H 0.04 1.45 6.67 -2.39 -0.02 1.43 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 32 H 0.41 7.48 6.87 -92.70 -0.64 6.84 16 33 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.23 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.40 5.05 9.08 -74.06 -0.67 4.38 16 39 H 0.07 2.10 7.93 -2.39 -0.02 2.08 16 40 H 0.05 1.33 6.64 -2.39 -0.02 1.31 16 Total: -1.00 -77.19 326.07 0.41 -76.78 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.32 Total: 20.56 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 8.00 Total: 18.67 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.92 Total: -128.06 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -2.02 Total: -32.66 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.67 Total: 44.70 kcal Total: -77.19 0.41 -76.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090847623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.736 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds