Wall clock time and date at job start Tue Mar 31 2020 04:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35833 * 126.45658 * 2 1 4 4 H 0.97001 * 124.92351 * 359.95608 * 3 2 1 5 5 N 1.28468 * 110.16529 * 179.97438 * 3 2 1 6 6 C 1.31925 * 110.20959 * 0.02562 * 5 3 2 7 7 C 1.47521 * 126.46228 * 179.97438 * 6 5 3 8 8 O 1.21590 * 120.00529 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99962 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00417 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47513 * 180.02562 * 10 9 7 12 12 C 1.53787 * 113.61338 * 274.14146 * 11 10 9 13 13 C 1.53954 * 87.01487 * 220.04400 * 12 11 10 14 14 N 1.46495 * 113.53845 * 270.80719 * 13 12 11 15 15 C 1.36941 * 120.00248 * 252.50088 * 14 13 12 16 16 H 1.08001 * 119.99678 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47109 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47075 * 119.99616 * 19 17 15 22 22 H 1.48500 * 109.46748 * 239.99715 * 19 17 15 23 23 C 1.53774 * 113.61838 * 176.53141 * 11 10 9 24 24 C 1.35776 * 126.46197 * 179.68482 * 2 1 3 25 25 O 1.36092 * 127.26805 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47152 * 90.02480 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02581 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02562 * 1 2 3 29 29 H 0.97003 * 119.99768 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47249 * 300.00177 * 10 9 7 31 31 H 1.09000 * 109.46976 * 60.00383 * 10 9 7 32 32 H 1.09002 * 112.84945 * 45.32865 * 11 10 9 33 33 H 1.09000 * 113.61349 * 334.56139 * 12 11 10 34 34 H 1.08997 * 113.61636 * 105.46445 * 12 11 10 35 35 H 1.09004 * 113.73719 * 139.94340 * 13 12 11 36 36 H 0.97003 * 120.00111 * 72.49985 * 14 13 12 37 37 H 0.96998 * 119.99355 * 180.02562 * 18 17 15 38 38 H 1.08994 * 113.61585 * 254.53208 * 23 11 10 39 39 H 1.09005 * 113.61222 * 25.43052 * 23 11 10 40 40 H 0.96693 * 114.00572 * 89.99501 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0118 -0.0006 5 7 3.5473 0.7321 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8810 -1.3776 0.0003 8 8 4.8271 -2.5923 -0.0003 9 7 6.0769 -0.7562 0.0010 10 6 7.3119 -1.5442 0.0015 11 6 8.5178 -0.6025 0.0028 12 6 8.9418 -0.1425 -1.4021 13 6 10.3975 -0.3073 -0.9290 14 7 10.9525 0.9000 -0.3122 15 6 11.8889 1.6422 -0.9812 16 1 12.2185 1.3372 -1.9634 17 6 12.4152 2.7859 -0.3965 18 7 12.0138 3.1572 0.8008 19 14 13.6931 3.7979 -1.3088 20 1 13.9721 3.1717 -2.6261 21 1 13.1787 5.1757 -1.5143 22 1 14.9445 3.8505 -0.5111 23 6 9.8689 -1.3318 0.0887 24 6 2.3139 -1.0920 0.0060 25 8 1.9326 -2.3984 0.0127 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 6.1200 0.2129 0.0018 30 1 7.3414 -2.1729 0.8914 31 1 7.3423 -2.1726 -0.8886 32 1 8.4163 0.2143 0.7175 33 1 8.6583 -0.8370 -2.1929 34 1 8.6682 0.8888 -1.6249 35 1 11.0571 -0.7397 -1.6815 36 1 10.6567 1.1737 0.5701 37 1 12.3813 3.9566 1.2091 38 1 10.3428 -1.2593 1.0675 39 1 9.8394 -2.3521 -0.2939 40 1 1.8227 -2.7806 -0.8686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090985956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:46 Heat of formation + Delta-G solvation = 22.721249 kcal Electronic energy + Delta-G solvation = -22732.922414 eV Core-core repulsion = 19164.473988 eV Total energy + Delta-G solvation = -3568.448426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.97881 -39.50175 -38.35617 -37.40588 -34.56867 -33.28277 -32.88207 -31.33773 -30.11187 -27.65061 -27.08207 -25.02239 -24.31986 -23.37899 -21.66806 -21.53247 -20.16679 -18.55142 -18.34651 -17.48842 -17.32278 -16.86673 -16.21456 -15.78958 -15.12885 -14.80212 -14.49315 -14.31019 -14.10630 -13.97755 -13.53985 -13.47017 -13.10375 -12.96794 -12.86067 -12.22753 -11.95457 -11.88057 -11.36056 -11.02453 -10.85297 -10.66412 -10.46118 -10.21683 -10.11510 -9.80086 -9.67721 -9.66280 -9.43552 -9.04238 -8.91410 -8.85191 -6.98405 -5.79785 -3.08576 1.29065 1.57960 2.39565 3.16096 3.31388 3.41945 3.47831 3.50010 3.96866 4.26985 4.36698 4.56624 4.68133 5.00007 5.05004 5.11964 5.18296 5.30116 5.32202 5.41330 5.47129 5.67803 5.73399 5.81019 5.91566 6.00971 6.14981 6.25242 6.41140 6.46553 6.56292 6.63458 6.78846 6.93865 7.08111 7.35864 7.43731 7.67178 7.70523 8.24532 8.39543 9.50164 10.08311 10.42455 11.42785 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.002706 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.209888 B =10345.370847 C =11188.245153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.013 4.013 3 N -0.373 5.373 4 H 0.451 0.549 5 N -0.240 5.240 6 C -0.027 4.027 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.710 5.710 10 C 0.131 3.869 11 C -0.120 4.120 12 C -0.168 4.168 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.147 4.147 24 C 0.046 3.954 25 O -0.452 6.452 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.408 0.592 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.121 -6.482 -2.693 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 N -0.091 5.091 4 H 0.296 0.704 5 N -0.077 5.077 6 C -0.189 4.189 7 C 0.382 3.618 8 O -0.404 6.404 9 N -0.361 5.361 10 C 0.008 3.992 11 C -0.139 4.139 12 C -0.209 4.209 13 C 0.055 3.945 14 N -0.345 5.345 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.187 4.187 24 C -0.010 4.010 25 O -0.257 6.257 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.243 0.757 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -23.286 -6.347 -2.188 24.235 hybrid contribution -0.132 1.032 -0.592 1.197 sum -23.418 -5.315 -2.780 24.174 Atomic orbital electron populations 1.20316 0.85948 1.04282 1.03378 1.21577 0.95457 0.87431 1.09451 1.43087 1.02829 1.09341 1.53816 0.70392 1.73670 1.01679 1.14169 1.18174 1.22469 0.95555 0.90003 1.10913 1.16788 0.81644 0.86425 0.76983 1.90809 1.86728 1.12652 1.50248 1.45930 1.05219 1.11196 1.73754 1.21527 0.81886 0.93872 1.01897 1.22715 0.92795 0.98461 0.99888 1.23914 1.01564 1.00954 0.94508 1.21094 0.91630 0.87973 0.93808 1.42187 1.47454 1.25087 1.19737 1.19342 1.14338 1.03791 0.99672 0.90940 1.24768 1.00611 0.98764 0.96848 1.69674 1.46622 1.26524 1.15245 0.86100 0.81142 0.80083 0.78772 1.20499 1.21878 1.21845 1.23436 0.95092 0.98685 1.01473 1.17782 0.89007 0.85097 1.09139 1.84891 1.88736 1.19118 1.32960 0.90248 0.90861 0.89229 0.75665 0.91601 0.91370 0.88845 0.91404 0.91499 0.91952 0.78100 0.93514 0.91297 0.90407 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.01 0.38 0.04 16 2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.70 16 3 N -0.37 -2.97 6.87 33.71 0.23 -2.74 16 4 H 0.45 1.82 8.96 -190.44 -1.71 0.12 16 5 N -0.24 -2.78 11.91 33.45 0.40 -2.38 16 6 C -0.03 -0.37 7.13 -82.70 -0.59 -0.96 16 7 C 0.60 9.18 7.82 -12.48 -0.10 9.09 16 8 O -0.53 -9.50 16.53 3.10 0.05 -9.45 16 9 N -0.71 -10.06 5.55 -61.36 -0.34 -10.40 16 10 C 0.13 1.88 5.50 -4.04 -0.02 1.85 16 11 C -0.12 -1.87 3.62 -89.81 -0.33 -2.19 16 12 C -0.17 -2.87 7.44 -25.82 -0.19 -3.06 16 13 C 0.17 3.30 4.57 -67.03 -0.31 2.99 16 14 N -0.71 -17.54 5.31 -52.55 -0.28 -17.82 16 15 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 24 C 0.05 0.53 7.28 -39.12 -0.28 0.24 16 25 O -0.45 -5.00 13.20 -22.22 -0.29 -5.30 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.41 5.48 8.19 -40.82 -0.33 5.14 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.39 10.13 7.90 -40.82 -0.32 9.80 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.39 2.62 9.07 45.56 0.41 3.04 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -35.18 346.47 -7.90 -43.09 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.12 Total: 12.38 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.47 Total: -2.59 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.73 Total: -60.62 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.24 Total: -14.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.18 -7.90 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090985956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds