Wall clock time and date at job start Tue Mar 31 2020 03:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00236 * 2 1 4 4 H 1.48500 * 109.47013 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46960 * 120.00041 * 3 2 1 6 6 H 1.48492 * 109.47314 * 240.00084 * 3 2 1 7 7 C 1.38814 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00405 * 154.30182 * 7 2 1 9 9 N 1.36934 * 119.99628 * 334.31440 * 7 2 1 10 10 C 1.50245 * 130.83774 * 341.38314 * 9 7 2 11 11 H 1.08997 * 115.85830 * 359.62128 * 10 9 7 12 12 C 1.55840 * 101.05346 * 233.94047 * 10 9 7 13 13 C 1.55487 * 103.32759 * 326.97567 * 12 10 9 14 14 C 1.50238 * 130.84328 * 161.05805 * 9 7 2 15 15 H 1.09008 * 115.85440 * 359.67236 * 14 9 7 16 16 C 1.56855 * 100.58669 * 234.62531 * 14 9 7 17 17 H 1.08995 * 110.90676 * 85.22473 * 16 14 9 18 18 N 1.46501 * 110.57081 * 208.24144 * 16 14 9 19 19 C 1.34784 * 119.99872 * 268.67684 * 18 16 14 20 20 O 1.21284 * 119.99931 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99830 * 179.97438 * 19 18 16 22 22 H 1.09001 * 110.48692 * 42.70400 * 21 19 18 23 23 C 1.54102 * 110.55090 * 280.00120 * 21 19 18 24 24 N 1.47047 * 103.86034 * 241.40631 * 23 21 19 25 25 C 1.33943 * 109.18342 * 0.02562 * 24 23 21 26 26 O 1.21590 * 123.04484 * 179.97438 * 25 24 23 27 27 N 1.33948 * 113.91570 * 0.02562 * 25 24 23 28 28 C 1.54851 * 103.35590 * 326.65443 * 16 14 9 29 29 H 0.96996 * 120.00346 * 181.67255 * 1 2 3 30 30 H 1.08994 * 110.62621 * 85.55050 * 12 10 9 31 31 H 1.09007 * 110.62527 * 208.57521 * 12 10 9 32 32 H 1.09000 * 110.61007 * 241.58865 * 13 12 10 33 33 H 1.08994 * 110.88941 * 118.54597 * 13 12 10 34 34 H 0.96995 * 119.99951 * 88.67856 * 18 16 14 35 35 H 1.08996 * 110.55150 * 0.02562 * 23 21 19 36 36 H 1.08998 * 110.54686 * 122.81465 * 23 21 19 37 37 H 0.97006 * 125.40554 * 180.02562 * 24 23 21 38 38 H 0.97006 * 125.40948 * 179.97438 * 27 25 24 39 39 H 1.09008 * 110.62541 * 241.79002 * 28 16 14 40 40 H 1.08996 * 110.62919 * 118.76894 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 1.2126 6 1 3.1039 1.6964 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0102 -1.2482 -0.4061 9 7 1.4271 -2.3296 0.5130 10 6 0.2581 -2.4950 1.4422 11 1 -0.2153 -1.5729 1.7794 12 6 0.8890 -3.3756 2.5624 13 6 1.9130 -4.2563 1.7920 14 6 1.7552 -3.7824 0.3157 15 1 2.5929 -3.9946 -0.3487 16 6 0.3648 -4.3296 -0.1615 17 1 0.2436 -4.1987 -1.2368 18 7 0.2131 -5.7398 0.2054 19 6 0.5928 -6.7048 -0.6555 20 8 1.0605 -6.4056 -1.7339 21 6 0.4373 -8.1554 -0.2778 22 1 -0.5260 -8.3230 0.2039 23 6 1.5884 -8.6005 0.6450 24 7 2.2596 -9.6640 -0.1170 25 6 1.6301 -9.8313 -1.2873 26 8 1.9781 -10.6500 -2.1162 27 7 0.5832 -9.0143 -1.4625 28 6 -0.6497 -3.4524 0.6125 29 1 -0.4850 -0.8396 0.0245 30 1 1.3936 -2.7534 3.3014 31 1 0.1289 -3.9968 3.0364 32 1 1.6583 -5.3119 1.8857 33 1 2.9272 -4.0741 2.1473 34 1 -0.1606 -5.9790 1.0680 35 1 2.2722 -7.7722 0.8305 36 1 1.1965 -8.9915 1.5839 37 1 3.0352 -10.1648 0.1807 38 1 0.0116 -8.9932 -2.2460 39 1 -1.2637 -4.0662 1.2716 40 1 -1.2740 -2.8865 -0.0788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095946183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:00 Heat of formation + Delta-G solvation = 0.937940 kcal Electronic energy + Delta-G solvation = -24510.713520 eV Core-core repulsion = 20941.320499 eV Total energy + Delta-G solvation = -3569.393021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49902 -39.96887 -38.47572 -36.33839 -34.24208 -33.22289 -32.61574 -30.10585 -29.14412 -29.08712 -27.49518 -24.45507 -23.74447 -21.99892 -21.71218 -20.79696 -19.76723 -18.90546 -18.12994 -17.84754 -17.51563 -16.52997 -15.87254 -15.61011 -15.30069 -14.79320 -14.60799 -14.32757 -14.12758 -13.82429 -13.72435 -13.23856 -13.04029 -12.60890 -12.43783 -11.99452 -11.79574 -11.39109 -11.16912 -10.81362 -10.66794 -10.51552 -10.36792 -10.26831 -10.13426 -10.01674 -9.66969 -9.61872 -9.48914 -9.06764 -8.80971 -8.51445 -7.03990 -6.24562 -3.20656 2.36467 2.58885 2.86244 3.18701 3.46225 3.49077 3.66940 3.77068 3.97544 4.41266 4.50816 4.54409 4.90609 4.92527 5.11346 5.23295 5.28405 5.34661 5.50047 5.63364 5.65282 5.80217 5.84077 5.97841 6.00603 6.24238 6.31495 6.43322 6.56242 6.61893 6.71212 6.74150 6.90267 6.93362 7.02784 7.12263 7.51155 7.55768 8.20295 8.35534 8.40963 8.87387 9.70597 10.38472 11.18138 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031143 B = 0.003726 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.871803 B = 7513.336938 C = 7675.571426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.027 4.027 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.326 4.326 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.141 3.859 11 H 0.105 0.895 12 C -0.132 4.132 13 C -0.126 4.126 14 C 0.128 3.872 15 H 0.086 0.914 16 C 0.125 3.875 17 H 0.087 0.913 18 N -0.707 5.707 19 C 0.495 3.505 20 O -0.521 6.521 21 C 0.102 3.898 22 H 0.115 0.885 23 C 0.104 3.896 24 N -0.739 5.739 25 C 0.706 3.294 26 O -0.587 6.587 27 N -0.714 5.714 28 C -0.136 4.136 29 H 0.270 0.730 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.432 0.568 38 H 0.434 0.566 39 H 0.060 0.940 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -15.576 7.889 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.228 4.228 3 Si 0.903 3.097 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.453 4.453 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.034 3.966 11 H 0.122 0.878 12 C -0.171 4.171 13 C -0.165 4.165 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.019 3.981 17 H 0.105 0.895 18 N -0.359 5.359 19 C 0.277 3.723 20 O -0.396 6.396 21 C -0.009 4.009 22 H 0.133 0.867 23 C -0.022 4.022 24 N -0.402 5.402 25 C 0.405 3.595 26 O -0.465 6.465 27 N -0.376 5.376 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.274 0.726 38 H 0.277 0.723 39 H 0.078 0.922 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.608 -13.876 6.542 15.425 hybrid contribution -0.002 -1.830 0.284 1.852 sum -1.610 -15.705 6.826 17.200 Atomic orbital electron populations 1.70817 1.06403 1.30411 1.48547 1.25842 0.96588 1.01105 0.99267 0.83364 0.74627 0.75491 0.76208 1.21032 1.22084 1.21961 1.19726 0.98184 0.86481 1.40941 0.91573 1.46562 1.35309 0.99491 1.50031 1.22963 0.88899 0.95358 0.89393 0.87762 1.23038 0.97884 0.98132 0.98036 1.22965 0.98947 0.97264 0.97335 1.23440 0.94415 0.86179 0.94029 0.89581 1.22942 0.98197 0.76926 0.99989 0.89474 1.46258 1.63562 1.06889 1.19178 1.20661 0.79128 0.87133 0.85332 1.90778 1.43193 1.83010 1.22647 1.21891 1.01353 0.89788 0.87835 0.86728 1.22273 0.93394 0.91773 0.94790 1.45035 1.34895 1.41323 1.18979 1.15853 0.80009 0.81238 0.82393 1.90999 1.69637 1.39626 1.46194 1.44806 1.33528 1.38120 1.21099 1.23220 0.97078 0.97979 0.99360 0.91878 0.92368 0.92980 0.92909 0.92599 0.76971 0.89227 0.88667 0.72609 0.72342 0.92185 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 12.91 55.49 0.72 -25.96 16 2 C -0.03 -0.74 5.29 -17.43 -0.09 -0.83 16 3 Si 1.07 24.89 29.99 -169.99 -5.10 19.79 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.33 -8.92 10.39 -15.06 -0.16 -9.08 16 8 H 0.07 1.84 7.95 -52.49 -0.42 1.42 16 9 N -0.59 -14.00 2.80 -145.21 -0.41 -14.40 16 10 C 0.14 2.85 3.77 -62.80 -0.24 2.61 16 11 H 0.10 2.40 6.79 -51.93 -0.35 2.04 16 12 C -0.13 -2.12 6.49 -23.89 -0.16 -2.27 16 13 C -0.13 -1.95 6.38 -23.89 -0.15 -2.10 16 14 C 0.13 2.48 5.35 -62.23 -0.33 2.15 16 15 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 16 C 0.13 2.12 3.20 -64.87 -0.21 1.92 16 17 H 0.09 1.78 7.54 -51.93 -0.39 1.39 16 18 N -0.71 -8.30 3.79 -50.86 -0.19 -8.50 16 19 C 0.50 6.22 6.95 -10.98 -0.08 6.14 16 20 O -0.52 -9.37 16.20 5.55 0.09 -9.28 16 21 C 0.10 0.86 4.18 -68.21 -0.28 0.57 16 22 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 23 C 0.10 0.70 7.70 -3.17 -0.02 0.67 16 24 N -0.74 -6.76 6.37 -64.71 -0.41 -7.18 16 25 C 0.71 9.24 8.92 -88.40 -0.79 8.45 16 26 O -0.59 -10.19 18.05 5.29 0.10 -10.10 16 27 N -0.71 -7.85 5.60 -59.33 -0.33 -8.18 16 28 C -0.14 -2.32 6.06 -24.24 -0.15 -2.47 16 29 H 0.27 7.60 5.49 -40.82 -0.22 7.38 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.66 7.85 -51.92 -0.41 0.26 16 32 H 0.05 0.63 6.49 -51.93 -0.34 0.29 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.40 3.27 7.94 -40.82 -0.32 2.94 16 35 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.43 3.12 8.96 -40.82 -0.37 2.75 16 38 H 0.43 4.54 8.96 -40.82 -0.37 4.18 16 39 H 0.06 0.80 7.43 -51.92 -0.39 0.41 16 40 H 0.07 1.36 7.59 -51.93 -0.39 0.97 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -36.44 323.13 -8.60 -45.04 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.28 Total: 8.11 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.65 Total: 5.77 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.63 Total: -64.21 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.19 Total: -19.38 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.44 -8.60 -45.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095946183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.977 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds