Wall clock time and date at job start Tue Mar 31 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30650 * 128.64190 * 2 1 4 4 O 1.20839 * 109.61788 * 180.24409 * 3 2 1 5 5 N 1.20901 * 115.90794 * 359.73254 * 4 3 2 6 6 C 1.31593 * 109.18462 * 0.02562 * 5 4 3 7 7 C 1.48277 * 128.71725 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00161 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99674 * 0.02562 * 7 6 5 10 10 C 1.47425 * 125.64954 * 180.02562 * 9 7 6 11 11 C 1.54907 * 104.83142 * 204.08984 * 10 9 7 12 12 H 1.09000 * 111.00135 * 81.06852 * 11 10 9 13 13 C 1.52999 * 111.00048 * 204.91325 * 11 10 9 14 14 N 1.46503 * 109.47602 * 287.19823 * 13 11 10 15 15 C 1.36929 * 120.00014 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00382 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99679 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00249 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46905 * 60.00140 * 19 17 15 21 21 H 1.48505 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47159 * 299.99956 * 19 17 15 23 23 C 1.55147 * 101.58252 * 322.98972 * 11 10 9 24 24 H 1.08997 * 110.87264 * 277.06700 * 23 11 10 25 25 C 1.53006 * 110.71926 * 153.86788 * 23 11 10 26 26 C 1.47020 * 125.64945 * 359.97059 * 9 7 6 27 27 H 1.09005 * 109.46735 * 270.15857 * 1 2 3 28 28 H 1.08995 * 109.47524 * 30.15838 * 1 2 3 29 29 H 1.09000 * 109.47132 * 150.16624 * 1 2 3 30 30 H 1.09002 * 110.36463 * 322.93342 * 10 9 7 31 31 H 1.09001 * 110.36471 * 85.13888 * 10 9 7 32 32 H 1.08992 * 109.47475 * 47.19905 * 13 11 10 33 33 H 1.09006 * 109.47078 * 167.20030 * 13 11 10 34 34 H 0.97003 * 119.99387 * 359.97438 * 14 13 11 35 35 H 0.96996 * 120.00228 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.47002 * 305.02017 * 25 23 11 37 37 H 1.08993 * 109.46955 * 65.02454 * 25 23 11 38 38 H 1.09000 * 109.47050 * 185.02283 * 25 23 11 39 39 H 1.09009 * 109.88145 * 59.56116 * 26 9 7 40 40 H 1.08999 * 110.01397 * 298.47259 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0048 5 7 3.6101 -0.5737 -0.0034 6 6 2.4281 -1.1520 0.0027 7 6 2.1034 -2.5988 0.0061 8 8 0.9438 -2.9612 0.0114 9 7 3.0948 -3.5118 0.0033 10 6 2.9152 -4.9751 0.0055 11 6 4.2262 -5.5345 0.6123 12 1 4.2084 -5.4776 1.7006 13 6 4.4783 -6.9693 0.1445 14 7 3.5393 -7.8733 0.8134 15 6 3.5769 -9.2165 0.5504 16 1 4.2985 -9.6096 -0.1504 17 6 2.6868 -10.0729 1.1838 18 7 1.8070 -9.5939 2.0376 19 14 2.7376 -11.9054 0.8245 20 1 4.0731 -12.4440 1.1869 21 1 1.6928 -12.5955 1.6229 22 1 2.4875 -12.1334 -0.6214 23 6 5.2821 -4.5633 0.0216 24 1 5.5668 -4.8654 -0.9862 25 6 6.5119 -4.4841 0.9285 26 6 4.5344 -3.2136 -0.0038 27 1 -0.3633 0.0028 1.0277 28 1 -0.3634 0.8885 -0.5163 29 1 -0.3633 -0.8915 -0.5112 30 1 2.0621 -5.2516 0.6250 31 1 2.7792 -5.3422 -1.0118 32 1 4.3353 -7.0302 -0.9343 33 1 5.4998 -7.2581 0.3925 34 1 2.8914 -7.5202 1.4432 35 1 1.1848 -10.1922 2.4799 36 1 6.2025 -4.2102 1.9372 37 1 7.0092 -5.4537 0.9517 38 1 7.2000 -3.7319 0.5427 39 1 4.7960 -2.6282 0.8779 40 1 4.7966 -2.6614 -0.9062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107083855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:53 Heat of formation + Delta-G solvation = 89.981594 kcal Electronic energy + Delta-G solvation = -23609.243843 eV Core-core repulsion = 20043.712044 eV Total energy + Delta-G solvation = -3565.531799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.13080 -40.26816 -38.11330 -35.46979 -35.07274 -34.59266 -32.98568 -31.44422 -29.91953 -29.18394 -26.89685 -26.21573 -24.83436 -23.18225 -22.66783 -21.21649 -20.28329 -20.01855 -19.31170 -18.08042 -17.36351 -16.97903 -16.30541 -15.65096 -14.87779 -14.53543 -14.38396 -14.18358 -13.82736 -13.69526 -13.66795 -13.20554 -13.12785 -12.96889 -12.40415 -12.36108 -12.24379 -12.12939 -12.01680 -11.42274 -11.37259 -11.10790 -10.87795 -10.66176 -10.59821 -10.51914 -10.44987 -10.39559 -10.05811 -9.68815 -8.89600 -8.79210 -6.95468 -5.77667 -3.07312 0.52999 1.03903 2.36939 2.77343 3.10671 3.19033 3.43585 3.47943 3.49133 3.57727 4.30282 4.44132 4.49564 4.54896 4.73881 4.80622 4.87591 5.15087 5.23533 5.28845 5.41556 5.45060 5.47484 5.56494 5.68435 5.69595 5.78417 5.93418 5.96459 6.03761 6.09223 6.17446 6.31268 6.34352 6.65761 6.77156 7.23189 7.67797 7.75011 8.18425 8.40407 9.51750 10.07924 10.42306 11.44870 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.003354 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.060987 B = 8346.098341 C = 9306.369937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.360 5.360 4 O 0.338 5.662 5 N -0.318 5.318 6 C -0.035 4.035 7 C 0.613 3.387 8 O -0.511 6.511 9 N -0.598 5.598 10 C 0.116 3.884 11 C -0.101 4.101 12 H 0.088 0.912 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.098 4.098 24 H 0.089 0.911 25 C -0.140 4.140 26 C 0.105 3.895 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 20.530 -4.348 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.086 5.086 4 O 0.114 5.886 5 N -0.039 5.039 6 C -0.201 4.201 7 C 0.397 3.603 8 O -0.385 6.385 9 N -0.331 5.331 10 C -0.005 4.005 11 C -0.120 4.120 12 H 0.106 0.894 13 C 0.038 3.962 14 N -0.377 5.377 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.117 4.117 24 H 0.107 0.893 25 C -0.197 4.197 26 C -0.018 4.018 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.605 20.903 -4.411 21.854 hybrid contribution -0.792 -1.390 0.055 1.601 sum 3.813 19.513 -4.356 20.354 Atomic orbital electron populations 1.20359 0.82861 1.05290 1.04861 1.26247 1.00400 0.85119 0.98653 1.75058 0.91192 1.24028 1.18346 1.85059 1.23307 1.16841 1.63421 1.75447 1.23000 0.92602 1.12899 1.26075 0.88016 0.98371 1.07591 1.16011 0.84749 0.81059 0.78436 1.90850 1.18244 1.79194 1.50244 1.48367 1.06489 1.07712 1.70501 1.22512 0.99802 0.75815 1.02331 1.22698 0.92471 0.95909 1.00926 0.89354 1.20578 0.94044 0.86116 0.95444 1.42355 1.39779 1.03831 1.51755 1.19156 1.14217 0.83478 1.20565 0.91200 1.24749 0.98495 0.98093 0.99470 1.69647 1.22555 1.34252 1.31559 0.86267 0.77045 0.85315 0.77532 1.21275 1.21680 1.21243 1.22240 0.95320 0.93190 1.00958 0.89291 1.21739 0.96501 1.02442 0.99029 1.22294 0.79126 0.98052 1.02348 0.88733 0.89449 0.87859 0.89231 0.90344 0.95997 0.95597 0.78225 0.93398 0.92424 0.91475 0.92522 0.90775 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.22 36.00 0.37 -0.25 16 2 C 0.06 0.67 7.79 -79.32 -0.62 0.05 16 3 N -0.36 -3.91 12.22 33.76 0.41 -3.50 16 4 O 0.34 3.62 11.65 27.27 0.32 3.94 16 5 N -0.32 -3.66 10.17 33.49 0.34 -3.32 16 6 C -0.03 -0.44 7.35 -80.07 -0.59 -1.03 16 7 C 0.61 9.03 7.87 -12.13 -0.10 8.94 16 8 O -0.51 -8.75 16.22 5.37 0.09 -8.66 16 9 N -0.60 -8.42 3.33 -171.47 -0.57 -8.99 16 10 C 0.12 1.83 6.32 -2.53 -0.02 1.81 16 11 C -0.10 -1.51 2.49 -88.48 -0.22 -1.73 16 12 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 13 C 0.17 3.11 5.72 -4.04 -0.02 3.09 16 14 N -0.73 -17.96 5.55 -59.91 -0.33 -18.29 16 15 C -0.24 -6.68 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.10 -1.13 3.01 -88.79 -0.27 -1.40 16 24 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 25 C -0.14 -1.41 9.13 37.16 0.34 -1.07 16 26 C 0.10 1.21 5.20 -3.07 -0.02 1.19 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.93 7.31 -51.93 -0.38 0.55 16 30 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 31 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 32 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.83 7.43 -51.92 -0.39 0.44 16 40 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -31.13 338.90 -5.97 -37.10 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.64 Total: 4.36 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.38 Total: 2.33 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.58 Total: -61.40 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.40 Total: -4.72 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.13 -5.97 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107083855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.083 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds