Wall clock time and date at job start Tue Mar 31 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47126 * 300.00056 * 3 2 1 6 6 H 1.48501 * 109.46729 * 60.00082 * 3 2 1 7 7 C 1.38815 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47391 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47494 * 180.02562 * 12 11 10 14 14 C 1.34780 * 120.00212 * 180.02562 * 13 12 11 15 15 O 1.21685 * 119.99759 * 5.15494 * 14 13 12 16 16 C 1.46757 * 120.00094 * 185.15617 * 14 13 12 17 17 C 1.36941 * 126.93906 * 185.89983 * 16 14 13 18 18 N 1.33569 * 107.86762 * 179.97438 * 17 16 14 19 19 C 1.30242 * 109.64973 * 359.97438 * 18 17 16 20 20 N 1.35180 * 108.97443 * 0.05844 * 19 18 17 21 21 C 1.46502 * 123.70103 * 179.89489 * 20 19 18 22 22 C 1.53473 * 108.12568 * 343.77730 * 21 20 19 23 23 O 1.43043 * 109.58860 * 48.16019 * 22 21 20 24 24 C 1.43440 * 114.04484 * 289.99014 * 23 22 21 25 25 H 0.96995 * 119.99783 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00046 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47437 * 59.99843 * 10 9 7 28 28 H 1.09002 * 109.47112 * 299.99271 * 10 9 7 29 29 H 1.09006 * 109.47301 * 59.99815 * 11 10 9 30 30 H 1.08994 * 109.47541 * 299.99743 * 11 10 9 31 31 H 1.08999 * 109.47326 * 59.99467 * 12 11 10 32 32 H 1.09007 * 109.47011 * 300.00184 * 12 11 10 33 33 H 0.97001 * 120.00166 * 359.97438 * 13 12 11 34 34 H 1.08004 * 126.06806 * 359.97438 * 17 16 14 35 35 H 1.08997 * 109.73260 * 224.11964 * 21 20 19 36 36 H 1.08998 * 109.76772 * 103.45642 * 21 20 19 37 37 H 1.09000 * 109.44617 * 168.18959 * 22 21 20 38 38 H 1.09002 * 109.44977 * 288.13096 * 22 21 20 39 39 H 1.08997 * 109.82405 * 290.09314 * 24 23 22 40 40 H 1.09000 * 109.82100 * 169.26916 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 6 1.8289 -6.1447 0.0026 13 7 0.8770 -7.2582 0.0024 14 6 1.3263 -8.5289 0.0033 15 8 2.5185 -8.7526 0.0990 16 6 0.3775 -9.6427 -0.1112 17 6 0.6613 -10.9789 -0.0134 18 7 -0.4801 -11.6532 -0.1759 19 6 -1.4595 -10.8165 -0.3687 20 7 -0.9730 -9.5557 -0.3375 21 6 -1.8000 -8.3605 -0.5214 22 6 -3.1361 -8.7949 -1.1392 23 8 -3.6603 -9.9101 -0.4128 24 6 -2.9212 -11.1259 -0.5952 25 1 -0.4849 0.8400 -0.0004 26 1 0.3556 -2.3880 0.0005 27 1 2.6842 -3.7141 0.8921 28 1 2.6855 -3.7149 -0.8879 29 1 0.4376 -4.7625 -0.8882 30 1 0.4370 -4.7614 0.8917 31 1 2.4556 -6.2021 0.8926 32 1 2.4557 -6.2028 -0.8874 33 1 -0.0767 -7.0810 0.0023 34 1 1.6353 -11.4108 0.1636 35 1 -1.2952 -7.6629 -1.1896 36 1 -1.9780 -7.8835 0.4423 37 1 -3.8435 -7.9669 -1.0930 38 1 -2.9793 -9.0806 -2.1793 39 1 -3.0668 -11.4984 -1.6091 40 1 -3.2559 -11.8733 0.1241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160336990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:15 Heat of formation + Delta-G solvation = -2.866523 kcal Electronic energy + Delta-G solvation = -22950.009597 eV Core-core repulsion = 19380.451602 eV Total energy + Delta-G solvation = -3569.557995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.95421 -39.61838 -38.79059 -36.22376 -35.05109 -34.20480 -32.10507 -31.15166 -30.49360 -29.55951 -26.84490 -25.38975 -24.58044 -23.28936 -22.03890 -21.43065 -20.79845 -20.05592 -18.38706 -17.50367 -17.07868 -16.65498 -16.22762 -15.97509 -15.85747 -15.69376 -15.32443 -14.67534 -14.57632 -14.32572 -14.06815 -13.67690 -13.36482 -13.27197 -13.06978 -12.61642 -12.39204 -11.92576 -11.76558 -11.09832 -11.01758 -10.94378 -10.85756 -10.73401 -10.60262 -10.25808 -10.15932 -10.06125 -9.77772 -9.34585 -8.95037 -8.82006 -7.00735 -5.83866 -3.12994 0.91113 1.92884 2.39447 2.86283 2.98599 3.09055 3.39388 3.45500 3.47530 3.52240 3.75224 4.14267 4.23916 4.31720 4.53033 4.65269 4.77696 4.81570 4.90873 4.96791 5.00584 5.16660 5.19689 5.47515 5.51023 5.53521 5.82378 5.92540 6.04328 6.06446 6.20046 6.21198 6.26350 6.48552 6.68317 6.72654 7.15037 7.50065 7.64961 7.88859 8.35018 9.46468 10.02321 10.36960 11.39201 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002692 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.772731 B =10398.131723 C =11480.388361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.730 5.730 14 C 0.593 3.407 15 O -0.522 6.522 16 C -0.075 4.075 17 C 0.064 3.936 18 N -0.480 5.480 19 C 0.190 3.810 20 N -0.439 5.439 21 C 0.052 3.948 22 C 0.049 3.951 23 O -0.368 6.368 24 C 0.147 3.853 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.394 0.606 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 -22.482 -2.611 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.177 4.177 12 C -0.003 4.003 13 N -0.383 5.383 14 C 0.379 3.621 15 O -0.398 6.398 16 C -0.190 4.190 17 C -0.090 4.090 18 N -0.199 5.199 19 C -0.073 4.073 20 N -0.124 5.124 21 C -0.070 4.070 22 C -0.028 4.028 23 O -0.285 6.285 24 C 0.069 3.931 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.230 0.770 34 H 0.205 0.795 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.529 -23.125 -2.441 24.442 hybrid contribution 0.088 2.045 -0.137 2.051 sum -7.441 -21.080 -2.579 22.503 Atomic orbital electron populations 1.69666 1.05151 1.25636 1.57872 1.24759 0.95574 0.97802 1.02900 0.86090 0.78838 0.83902 0.77221 1.20474 1.21802 1.21795 1.19288 0.91162 0.84054 1.42638 0.90996 1.42332 1.05835 0.99987 1.89664 1.20512 0.93188 0.85056 0.98388 1.21963 0.99706 0.93367 1.02621 1.21461 0.91621 0.84144 1.03028 1.46276 1.10769 1.05840 1.75454 1.16800 0.87010 0.81385 0.76925 1.90867 1.14995 1.84201 1.49717 1.21120 0.82886 0.97575 1.17470 1.22768 0.97650 0.87816 1.00747 1.69867 0.98145 1.32438 1.19429 1.24186 0.98459 0.80180 1.04459 1.45285 1.06784 1.08162 1.52212 1.23042 0.92566 0.86816 1.04588 1.23035 0.93438 0.90933 0.95407 1.88206 1.51908 1.18064 1.70280 1.21366 0.80314 0.87538 1.03911 0.93523 0.78340 0.95897 0.95925 0.91380 0.91265 0.90756 0.90903 0.76988 0.79480 0.87345 0.87682 0.85373 0.91030 0.89232 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.15 5.60 -59.91 -0.34 -18.48 16 10 C 0.16 3.00 6.26 -4.04 -0.03 2.98 16 11 C -0.14 -1.98 5.44 -26.73 -0.15 -2.12 16 12 C 0.12 1.56 5.68 -4.05 -0.02 1.54 16 13 N -0.73 -8.40 5.43 -61.60 -0.33 -8.73 16 14 C 0.59 7.94 7.78 -12.82 -0.10 7.84 16 15 O -0.52 -8.66 16.92 5.20 0.09 -8.57 16 16 C -0.08 -0.90 6.95 -82.49 -0.57 -1.47 16 17 C 0.06 0.77 11.68 -17.27 -0.20 0.57 16 18 N -0.48 -5.66 11.19 -10.29 -0.12 -5.77 16 19 C 0.19 1.85 7.78 -155.30 -1.21 0.64 16 20 N -0.44 -4.21 3.16 -109.67 -0.35 -4.55 16 21 C 0.05 0.33 5.51 -3.80 -0.02 0.30 16 22 C 0.05 0.23 6.83 37.40 0.26 0.49 16 23 O -0.37 -2.48 10.79 -35.23 -0.38 -2.86 16 24 C 0.15 0.92 7.29 36.21 0.26 1.18 16 25 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.38 9.80 7.67 -40.82 -0.31 9.49 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.39 3.59 4.88 -40.82 -0.20 3.39 16 34 H 0.19 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.11 0.57 6.96 -51.93 -0.36 0.21 16 36 H 0.11 0.58 7.95 -51.93 -0.41 0.17 16 37 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -35.13 336.75 -8.15 -43.29 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.48 Total: 5.89 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.02 Total: 4.62 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.41 Total: -64.58 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.29 Total: -11.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.13 -8.15 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160336990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.419 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds