Wall clock time and date at job start Tue Mar 31 2020 03:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48497 * 109.47393 * 270.00254 * 3 2 1 5 5 H 1.48494 * 109.47178 * 30.00503 * 3 2 1 6 6 H 1.48501 * 109.47020 * 150.00308 * 3 2 1 7 7 C 1.37878 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99835 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.77860 * 61.79865 * 9 7 2 11 11 C 1.54593 * 110.72583 * 298.55374 * 9 7 2 12 12 C 1.53997 * 105.13807 * 219.68092 * 11 9 7 13 13 N 1.47899 * 107.05889 * 358.77516 * 12 11 9 14 14 C 1.46897 * 111.00068 * 145.84368 * 13 12 11 15 15 C 1.50703 * 109.46987 * 290.12747 * 14 13 12 16 16 N 1.30945 * 126.49023 * 90.02417 * 15 14 13 17 17 N 1.29021 * 109.76782 * 179.97438 * 16 15 14 18 18 C 1.29529 * 109.45901 * 359.97143 * 17 16 15 19 19 N 1.34328 * 126.48391 * 269.70952 * 15 14 13 20 20 C 1.46314 * 130.08866 * 0.15686 * 19 15 14 21 21 C 1.53522 * 108.05248 * 163.71582 * 20 19 15 22 22 O 1.43015 * 109.76200 * 48.20483 * 21 20 19 23 23 C 1.43726 * 113.91071 * 289.70521 * 22 21 20 24 24 C 1.48538 * 105.82096 * 25.32759 * 13 12 11 25 25 H 0.96994 * 120.00103 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00523 * 298.20368 * 10 9 7 27 27 H 1.09004 * 110.30922 * 100.76438 * 11 9 7 28 28 H 1.08998 * 110.30989 * 338.59559 * 11 9 7 29 29 H 1.09004 * 109.91456 * 118.12612 * 12 11 9 30 30 H 1.09001 * 109.91811 * 239.22178 * 12 11 9 31 31 H 1.08999 * 109.47042 * 50.12329 * 14 13 12 32 32 H 1.08997 * 109.47330 * 170.12886 * 14 13 12 33 33 H 1.09002 * 109.75048 * 283.35549 * 20 19 15 34 34 H 1.09009 * 109.74968 * 44.07616 * 20 19 15 35 35 H 1.09005 * 109.42450 * 168.29264 * 21 20 19 36 36 H 1.09001 * 109.41973 * 288.17247 * 21 20 19 37 37 H 1.08999 * 110.37405 * 290.05582 * 23 22 21 38 38 H 1.08994 * 109.31583 * 169.12001 * 23 22 21 39 39 H 1.09007 * 110.66246 * 79.22764 * 24 13 12 40 40 H 1.08993 * 110.66671 * 202.18915 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6223 -1.1777 11 6 0.3795 -2.6277 1.2698 12 6 0.5074 -4.1015 1.6979 13 7 1.3770 -4.7679 0.7043 14 6 2.1990 -5.8077 1.3375 15 6 3.2343 -5.1607 2.2211 16 7 3.0994 -4.8624 3.4890 17 7 4.1847 -4.3197 3.9275 18 6 5.0508 -4.2497 2.9669 19 7 4.4723 -4.7861 1.8585 20 6 5.1462 -4.8875 0.5637 21 6 6.3679 -3.9582 0.5892 22 8 7.1151 -4.1745 1.7894 23 6 6.4570 -3.7052 2.9778 24 6 2.2271 -3.6957 0.1263 25 1 -0.4850 0.8400 0.0004 26 1 -0.2296 -1.9402 -1.2641 27 1 -0.6593 -2.3888 1.0417 28 1 0.7558 -1.9718 2.0548 29 1 0.9599 -4.1627 2.6876 30 1 -0.4760 -4.5715 1.7096 31 1 1.5632 -6.4575 1.9388 32 1 2.6961 -6.3972 0.5672 33 1 5.4685 -5.9151 0.3957 34 1 4.4659 -4.5798 -0.2306 35 1 7.0002 -4.1669 -0.2739 36 1 6.0352 -2.9209 0.5524 37 1 6.4308 -2.6157 2.9920 38 1 6.9894 -4.0742 3.8543 39 1 3.0493 -3.4519 0.7992 40 1 2.6068 -3.9912 -0.8517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171533031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:30 Heat of formation + Delta-G solvation = 9.699274 kcal Electronic energy + Delta-G solvation = -25475.355663 eV Core-core repulsion = 21906.342561 eV Total energy + Delta-G solvation = -3569.013101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.32740 -38.78968 -38.49080 -35.28183 -34.54782 -32.19510 -31.81697 -30.76148 -29.41408 -28.16759 -26.75466 -25.71100 -24.22257 -24.11640 -21.51515 -20.51907 -19.80683 -19.54018 -17.66660 -17.36287 -16.82377 -16.16515 -15.61217 -15.49148 -15.20726 -14.94370 -14.47850 -14.36439 -14.08365 -13.55124 -13.42227 -13.26869 -12.60641 -12.23934 -12.23240 -11.81948 -11.54199 -11.39096 -11.29525 -11.20367 -11.03168 -10.73945 -10.54856 -10.44918 -10.40138 -10.27418 -10.02719 -9.84054 -9.25442 -8.97608 -8.66266 -8.21615 -8.01063 -6.27690 -4.36720 1.84006 2.38059 2.94375 3.16137 3.23885 3.25140 3.36141 3.99419 4.12865 4.21882 4.34301 4.59780 4.66529 4.78471 4.95422 5.00737 5.06281 5.17059 5.25839 5.32854 5.60040 5.63420 5.65275 5.80293 5.93579 6.02901 6.11550 6.21489 6.41683 6.43768 6.51506 6.75563 6.87176 6.98746 7.26968 7.38398 7.44971 7.49070 7.73595 8.07275 8.63606 8.82180 9.32080 9.46086 10.79498 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.006690 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.776072 B = 4184.135747 C = 5103.220537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.260 3.740 10 O -0.581 6.581 11 C -0.127 4.127 12 C 0.024 3.976 13 N -0.495 5.495 14 C 0.126 3.874 15 C 0.171 3.829 16 N -0.292 5.292 17 N -0.277 5.277 18 C 0.127 3.873 19 N -0.461 5.461 20 C 0.064 3.936 21 C 0.045 3.955 22 O -0.372 6.372 23 C 0.152 3.848 24 C 0.044 3.956 25 H 0.268 0.732 26 H 0.379 0.621 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -8.666 0.647 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.219 3.781 10 O -0.389 6.389 11 C -0.166 4.166 12 C -0.103 4.103 13 N -0.217 5.217 14 C -0.006 4.006 15 C -0.098 4.098 16 N -0.133 5.133 17 N -0.118 5.118 18 C -0.141 4.141 19 N -0.154 5.154 20 C -0.060 4.060 21 C -0.032 4.032 22 O -0.288 6.288 23 C 0.073 3.927 24 C -0.084 4.084 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.753 -9.307 1.483 13.562 hybrid contribution 0.795 1.829 -0.466 2.048 sum 10.548 -7.478 1.017 12.970 Atomic orbital electron populations 1.69721 1.05886 1.27530 1.49794 1.24974 0.94989 0.99353 0.93623 0.86510 0.79837 0.82909 0.78266 1.20349 1.20919 1.19964 1.21475 0.93138 0.90829 1.52335 0.92679 1.19276 0.86589 0.90024 0.82189 1.86119 1.51434 1.56347 1.44969 1.22899 1.01869 0.91619 1.00167 1.23091 0.96702 0.96581 0.93966 1.65145 1.16772 1.12016 1.27758 1.21173 0.90131 0.95571 0.93721 1.25893 0.86535 1.02461 0.94903 1.74577 1.16420 1.15551 1.06774 1.73878 0.97379 1.16012 1.24519 1.25316 1.00064 1.03987 0.84746 1.45985 1.12303 1.45586 1.11492 1.22909 0.95906 1.03134 0.84001 1.23051 0.92239 0.99081 0.88842 1.88199 1.43452 1.82715 1.14484 1.21252 0.83228 0.99040 0.89175 1.23436 0.95444 0.91602 0.97876 0.92225 0.77193 0.91383 0.92215 0.92924 0.91372 0.87703 0.89238 0.88442 0.86805 0.85881 0.90788 0.89121 0.85507 0.93505 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.02 55.43 0.61 -23.10 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.84 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.23 8.14 -34.44 -0.28 -14.51 16 8 H 0.05 1.44 7.78 -52.49 -0.41 1.03 16 9 C 0.26 6.35 0.95 -89.91 -0.09 6.27 16 10 O -0.58 -14.91 13.09 -35.23 -0.46 -15.37 16 11 C -0.13 -3.01 5.26 -25.37 -0.13 -3.14 16 12 C 0.02 0.49 6.46 -2.75 -0.02 0.47 16 13 N -0.49 -9.32 5.54 -231.89 -1.28 -10.60 16 14 C 0.13 1.92 5.92 -4.98 -0.03 1.89 16 15 C 0.17 2.91 5.31 -155.69 -0.83 2.08 16 16 N -0.29 -5.70 11.18 32.65 0.37 -5.34 16 17 N -0.28 -5.25 12.20 32.77 0.40 -4.85 16 18 C 0.13 2.01 7.90 -155.26 -1.23 0.79 16 19 N -0.46 -6.96 2.31 -110.76 -0.26 -7.21 16 20 C 0.06 0.71 6.60 -3.87 -0.03 0.68 16 21 C 0.05 0.44 6.81 37.43 0.26 0.70 16 22 O -0.37 -4.16 10.80 -35.23 -0.38 -4.54 16 23 C 0.15 1.76 7.29 36.05 0.26 2.02 16 24 C 0.04 0.90 4.15 -1.90 -0.01 0.89 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.38 9.86 7.48 45.56 0.34 10.20 16 27 H 0.07 1.68 7.99 -51.93 -0.41 1.27 16 28 H 0.06 1.54 7.84 -51.93 -0.41 1.14 16 29 H 0.05 1.09 6.22 -51.93 -0.32 0.77 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 1.48 8.08 -51.93 -0.42 1.06 16 32 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.31 5.75 -51.92 -0.30 1.01 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.97 4.72 -51.93 -0.25 0.72 16 40 H 0.07 1.41 7.45 -51.93 -0.39 1.03 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -31.61 315.56 -8.13 -39.74 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.65 Total: 11.04 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.21 Total: -0.02 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.16 Total: -51.10 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.84 Total: -19.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.61 -8.13 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171533031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.443 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds