Wall clock time and date at job start Tue Mar 31 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40475 * 119.76597 * 2 1 4 4 C 1.36602 * 118.31341 * 180.02562 * 3 2 1 5 5 C 1.41160 * 117.80623 * 359.97438 * 4 3 2 6 6 O 1.22063 * 120.34812 * 179.97438 * 5 4 3 7 7 N 1.34668 * 119.30597 * 0.02562 * 5 4 3 8 8 C 1.46497 * 119.17524 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47128 * 89.99929 * 8 7 5 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47535 * 180.02562 * 13 12 11 15 15 N 1.46495 * 109.47716 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00288 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99918 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99685 * 179.97438 * 16 15 14 19 19 N 1.31610 * 120.00442 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99717 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47293 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47303 * 120.00181 * 20 18 16 23 23 H 1.48498 * 109.47041 * 240.00412 * 20 18 16 24 24 N 1.28387 * 121.65729 * 0.27417 * 7 5 4 25 25 H 1.09000 * 109.47526 * 89.99490 * 1 2 3 26 26 H 1.08998 * 109.47024 * 210.00069 * 1 2 3 27 27 H 1.09003 * 109.46965 * 329.99287 * 1 2 3 28 28 H 1.07989 * 120.84381 * 0.02562 * 3 2 1 29 29 H 1.08003 * 121.09722 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47268 * 330.00069 * 8 7 5 31 31 H 1.08997 * 109.47471 * 210.00476 * 8 7 5 32 32 H 0.96995 * 120.00015 * 359.72695 * 11 9 8 33 33 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 34 34 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 35 35 H 1.09005 * 109.46767 * 299.99934 * 13 12 11 36 36 H 1.08996 * 109.47766 * 59.99412 * 13 12 11 37 37 H 1.09005 * 109.46889 * 299.99675 * 14 13 12 38 38 H 1.09004 * 109.47073 * 59.99170 * 14 13 12 39 39 H 0.97003 * 119.99919 * 359.97438 * 15 14 13 40 40 H 0.96996 * 120.00487 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2044 1.2194 0.0000 4 6 3.5699 1.1848 -0.0005 5 6 4.1966 -0.0801 -0.0005 6 8 5.4142 -0.1651 -0.0014 7 7 3.4369 -1.1921 -0.0005 8 6 4.0902 -2.5033 -0.0010 9 6 4.3148 -2.9532 1.4196 10 8 3.9632 -2.2483 2.3417 11 7 4.9063 -4.1391 1.6654 12 6 5.1240 -4.5767 3.0464 13 6 5.8076 -5.9455 3.0459 14 6 6.0345 -6.4029 4.4882 15 7 6.6885 -7.7138 4.4877 16 6 6.9939 -8.3270 5.6734 17 1 6.7531 -7.8441 6.6088 18 6 7.6131 -9.5694 5.6728 19 7 7.9071 -10.1578 4.5328 20 14 8.0305 -10.4057 7.2902 21 1 7.6011 -9.5419 8.4194 22 1 7.3262 -11.7106 7.3690 23 1 9.4965 -10.6288 7.3682 24 7 2.1544 -1.1320 -0.0057 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6744 2.1603 0.0004 29 1 4.1510 2.0952 -0.0010 30 1 5.0487 -2.4315 -0.5152 31 1 3.4556 -3.2253 -0.5148 32 1 5.1838 -4.7047 0.9280 33 1 5.7582 -3.8545 3.5607 34 1 4.1654 -4.6491 3.5601 35 1 5.1738 -6.6679 2.5315 36 1 6.7662 -5.8728 2.5324 37 1 6.6681 -5.6806 5.0030 38 1 5.0756 -6.4757 5.0014 39 1 6.9051 -8.1474 3.6475 40 1 8.3394 -11.0260 4.5324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171710117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:27 Heat of formation + Delta-G solvation = -27.650637 kcal Electronic energy + Delta-G solvation = -22373.336693 eV Core-core repulsion = 18802.703978 eV Total energy + Delta-G solvation = -3570.632715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.15737 -40.73933 -38.98725 -37.61588 -36.31263 -35.96208 -33.85985 -32.97738 -31.89999 -30.69871 -28.27559 -26.83665 -25.25407 -24.45760 -24.09973 -22.65320 -21.77914 -19.43323 -19.24606 -18.67823 -18.56364 -17.55615 -17.03976 -16.99132 -16.84945 -16.34112 -15.91297 -15.51654 -15.31379 -15.11731 -14.72209 -14.65955 -14.62101 -14.16255 -13.81862 -13.42154 -13.34796 -13.18705 -13.13722 -12.85895 -12.63920 -12.46974 -12.24095 -12.10448 -12.06378 -11.82803 -11.60194 -11.05002 -10.98076 -10.81783 -10.27144 -9.52357 -9.04564 -7.98819 -5.28194 -0.45781 0.59775 1.03273 1.36476 1.46534 1.47301 1.57667 1.97616 2.43417 2.54659 3.08246 3.35047 3.52627 3.61160 3.71056 3.83968 3.97540 4.01648 4.05644 4.10233 4.23577 4.39852 4.53578 4.66988 4.67490 4.69199 4.76081 4.82128 4.91906 5.03673 5.16191 5.19678 5.27427 5.30413 5.42388 5.46939 6.23952 6.32606 6.49702 7.00885 7.15201 7.30490 8.04527 8.28819 9.24838 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.002137 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.514620 B =13098.148450 C =13320.790023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.063 3.937 3 C -0.040 4.040 4 C -0.208 4.208 5 C 0.462 3.538 6 O -0.585 6.585 7 N -0.336 5.336 8 C 0.094 3.906 9 C 0.501 3.499 10 O -0.581 6.581 11 N -0.707 5.707 12 C 0.135 3.865 13 C -0.117 4.117 14 C 0.152 3.848 15 N -0.747 5.747 16 C -0.249 4.249 17 H 0.074 0.926 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.976 3.024 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.292 1.292 24 N -0.249 5.249 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.202 0.798 29 H 0.178 0.822 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.720 23.996 -16.105 33.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.063 4.063 4 C -0.238 4.238 5 C 0.262 3.738 6 O -0.467 6.467 7 N -0.153 5.153 8 C -0.030 4.030 9 C 0.287 3.713 10 O -0.461 6.461 11 N -0.360 5.360 12 C 0.010 3.990 13 C -0.156 4.156 14 C 0.025 3.975 15 N -0.390 5.390 16 C -0.381 4.381 17 H 0.092 0.908 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.219 1.219 24 N -0.072 5.072 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.219 0.781 29 H 0.196 0.804 30 H 0.162 0.838 31 H 0.184 0.816 32 H 0.259 0.741 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.208 0.792 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.333 23.474 -15.260 32.929 hybrid contribution 1.263 -0.447 0.447 1.413 sum -16.069 23.027 -14.813 31.748 Atomic orbital electron populations 1.20731 0.83402 1.05189 1.05062 1.22743 0.99821 0.87528 1.00736 1.22813 0.93346 1.01116 0.88996 1.22926 0.97000 0.96898 1.06941 1.18707 0.88232 0.87196 0.79625 1.90951 1.14144 1.87196 1.54431 1.46060 1.02823 1.08456 1.57987 1.21901 1.02795 0.83607 0.94696 1.21106 0.77026 0.81375 0.91799 1.90713 1.52453 1.55411 1.47483 1.45756 1.60640 1.19831 1.09780 1.21104 1.00265 0.95052 0.82551 1.21698 1.01442 0.95223 0.97191 1.20670 0.95121 0.86395 0.95340 1.42538 1.72001 1.18961 1.05470 1.19673 1.31210 0.99988 0.87243 0.90773 1.25605 1.02262 0.98616 1.00336 1.69804 1.48868 1.17232 1.25941 0.85044 0.77103 0.78127 0.79297 1.19197 1.21717 1.21883 1.70780 0.93876 1.30843 1.11687 0.88042 0.90972 0.87142 0.78079 0.80443 0.83839 0.81558 0.74127 0.92549 0.91685 0.90146 0.90680 0.96297 0.95892 0.79152 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.18 71.23 0.73 0.34 16 2 C 0.06 0.80 6.88 43.31 0.30 1.09 16 3 C -0.04 -0.38 9.84 22.43 0.22 -0.16 16 4 C -0.21 -3.57 10.13 22.60 0.23 -3.34 16 5 C 0.46 12.11 7.47 84.98 0.63 12.74 16 6 O -0.58 -19.70 16.65 -5.52 -0.09 -19.79 16 7 N -0.34 -7.75 2.71 -476.16 -1.29 -9.04 16 8 C 0.09 1.80 6.04 85.63 0.52 2.32 16 9 C 0.50 13.21 7.89 87.66 0.69 13.90 16 10 O -0.58 -21.01 16.43 -3.03 -0.05 -21.06 16 11 N -0.71 -15.80 5.56 -463.05 -2.57 -18.37 16 12 C 0.13 3.69 5.67 86.38 0.49 4.18 16 13 C -0.12 -3.50 5.44 30.59 0.17 -3.33 16 14 C 0.15 6.08 6.26 86.38 0.54 6.62 16 15 N -0.75 -38.38 5.60 -343.46 -1.92 -40.30 16 16 C -0.25 -14.20 9.99 84.04 0.84 -13.37 16 17 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 20 Si 0.98 46.58 29.55 68.60 2.03 48.60 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 N -0.25 -4.86 10.80 -47.21 -0.51 -5.37 16 25 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.11 -0.08 8.09 -2.39 -0.02 -0.10 16 28 H 0.20 -0.12 8.06 -2.92 -0.02 -0.15 16 29 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.14 2.46 7.37 -2.38 -0.02 2.45 16 31 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.42 6.39 8.47 -92.71 -0.79 5.60 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.38 20.13 7.67 -92.71 -0.71 19.42 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -86.38 350.10 1.26 -85.12 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.43 Total: 22.22 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.82 Total: 17.07 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -6.01 Total: -132.16 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.14 Total: -40.85 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -86.38 1.26 -85.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171710117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.465 kcal (2) G-P(sol) polarization free energy of solvation -86.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds