Wall clock time and date at job start Tue Mar 31 2020 03:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48501 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47133 * 300.00031 * 3 2 1 6 6 H 1.48506 * 109.47342 * 59.99809 * 3 2 1 7 7 C 1.38817 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00035 * 180.27368 * 9 7 2 11 11 C 1.53005 * 109.46870 * 179.72582 * 10 9 7 12 12 H 1.08997 * 109.46947 * 304.98913 * 11 10 9 13 13 C 1.54815 * 109.46639 * 185.00096 * 11 10 9 14 14 N 1.45120 * 109.53508 * 172.11874 * 13 11 10 15 15 C 1.34775 * 118.76110 * 269.30128 * 14 13 11 16 16 O 1.21600 * 120.00239 * 177.12084 * 15 14 13 17 17 C 1.47416 * 119.99845 * 357.11919 * 15 14 13 18 18 N 1.31621 * 125.86028 * 6.98499 * 17 15 14 19 19 C 1.33098 * 109.09137 * 179.97438 * 18 17 15 20 20 C 1.35565 * 108.35207 * 0.02562 * 19 18 17 21 21 N 1.35400 * 107.15737 * 359.76832 * 20 19 18 22 22 H 0.97005 * 126.43753 * 180.22624 * 21 20 19 23 23 C 1.47515 * 122.48262 * 89.28501 * 14 13 11 24 24 C 1.53563 * 111.02920 * 318.36248 * 23 14 13 25 25 C 1.51533 * 109.58080 * 320.02414 * 24 23 14 26 26 O 1.38008 * 109.47377 * 64.99373 * 11 10 9 27 27 H 0.96994 * 120.00355 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99664 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47552 * 299.72381 * 10 9 7 30 30 H 1.08998 * 109.47493 * 59.72553 * 10 9 7 31 31 H 1.09001 * 109.45813 * 292.14248 * 13 11 10 32 32 H 1.09003 * 109.45646 * 52.10095 * 13 11 10 33 33 H 1.08000 * 125.82540 * 179.97438 * 19 18 17 34 34 H 1.07996 * 126.41634 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.16648 * 78.76683 * 23 14 13 36 36 H 1.09003 * 109.16149 * 197.96643 * 23 14 13 37 37 H 1.09002 * 109.45036 * 80.06030 * 24 23 14 38 38 H 1.08999 * 109.45234 * 199.99034 * 24 23 14 39 39 H 1.09003 * 109.58848 * 211.17564 * 25 24 23 40 40 H 1.08994 * 109.59244 * 331.62265 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0072 11 6 1.0639 -4.8196 0.0126 12 1 0.3796 -4.7086 0.8537 13 6 1.8337 -6.1561 0.1468 14 7 0.8907 -7.2422 0.3393 15 6 0.5423 -7.5836 1.5957 16 8 -0.2854 -8.4548 1.7817 17 6 1.1648 -6.9008 2.7444 18 7 1.9702 -5.8618 2.6799 19 6 2.3351 -5.5167 3.9125 20 6 1.7415 -6.3658 4.7869 21 7 1.0008 -7.2350 4.0593 22 1 0.4574 -7.9598 4.4061 23 6 0.2986 -7.9864 -0.7884 24 6 -0.0925 -7.0372 -1.9304 25 6 -0.6915 -5.7699 -1.3548 26 8 0.3473 -4.8178 -1.1669 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0005 29 1 2.6851 -3.7190 -0.8823 30 1 2.6845 -3.7101 0.8976 31 1 2.4128 -6.3341 -0.7593 32 1 2.5064 -6.1032 1.0029 33 1 2.9926 -4.7002 4.1719 34 1 1.8377 -6.3492 5.8624 35 1 1.0232 -8.7118 -1.1582 36 1 -0.5899 -8.5142 -0.4416 37 1 0.7935 -6.7874 -2.5142 38 1 -0.8248 -7.5253 -2.5735 39 1 -1.4333 -5.3696 -2.0460 40 1 -1.1626 -5.9906 -0.3971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200429698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:31 Heat of formation + Delta-G solvation = 20.145020 kcal Electronic energy + Delta-G solvation = -24666.894303 eV Core-core repulsion = 21098.334163 eV Total energy + Delta-G solvation = -3568.560140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41450 -40.19532 -38.39042 -35.42386 -34.68281 -33.23691 -32.55425 -30.96302 -29.82023 -28.60089 -26.59294 -25.22061 -23.62129 -22.42076 -21.64997 -21.18202 -20.81711 -20.00834 -18.08225 -17.12696 -16.87663 -16.41874 -16.20668 -15.82423 -15.20266 -14.78467 -14.49508 -14.21499 -14.10457 -13.93178 -13.54992 -13.32166 -13.00503 -12.92754 -12.52981 -12.16562 -12.03677 -11.74172 -11.24283 -10.85081 -10.74337 -10.67226 -10.44632 -10.37918 -10.16611 -9.89871 -9.69569 -9.59517 -9.28829 -8.76478 -8.74471 -8.42473 -6.73987 -5.61760 -2.88653 1.22220 2.37722 2.50733 3.24357 3.30060 3.51775 3.56839 3.59497 4.09241 4.12693 4.68295 4.72090 4.81990 4.92582 5.10947 5.17300 5.26831 5.34679 5.42457 5.50333 5.62464 5.68698 5.71646 5.74622 5.83446 5.98708 6.13399 6.20053 6.27546 6.42132 6.47955 6.65189 6.88965 6.94050 7.00624 7.16030 7.63973 7.82589 7.96745 8.17442 8.56938 9.68112 10.29124 10.64466 11.61603 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.005066 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.457315 B = 5525.724599 C = 6879.344174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.018 4.018 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.171 3.829 11 C 0.099 3.901 12 H 0.048 0.952 13 C 0.048 3.952 14 N -0.581 5.581 15 C 0.600 3.400 16 O -0.552 6.552 17 C 0.141 3.859 18 N -0.423 5.423 19 C -0.022 4.022 20 C -0.025 4.025 21 N -0.526 5.526 22 H 0.428 0.572 23 C 0.111 3.889 24 C -0.165 4.165 25 C 0.074 3.926 26 O -0.373 6.373 27 H 0.252 0.748 28 H 0.385 0.615 29 H 0.022 0.978 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -19.232 5.572 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.213 4.213 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.043 3.957 11 C 0.040 3.960 12 H 0.066 0.934 13 C -0.075 4.075 14 N -0.311 5.311 15 C 0.386 3.614 16 O -0.430 6.430 17 C -0.119 4.119 18 N -0.146 5.146 19 C -0.174 4.174 20 C -0.164 4.164 21 N -0.128 5.128 22 H 0.267 0.733 23 C -0.011 4.011 24 C -0.203 4.203 25 C -0.003 4.003 26 O -0.291 6.291 27 H 0.062 0.938 28 H 0.219 0.781 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.199 0.801 34 H 0.203 0.797 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.407 -19.091 4.715 19.811 hybrid contribution -0.441 0.100 1.192 1.275 sum 1.966 -18.991 5.907 19.985 Atomic orbital electron populations 1.69688 1.05092 1.25189 1.58392 1.24714 0.95464 0.97521 1.03595 0.86138 0.78764 0.84410 0.77047 1.20595 1.22051 1.22084 1.19284 0.90991 0.84184 1.41668 0.91167 1.42246 1.05963 0.99634 1.89195 1.20567 0.92337 0.84258 0.98530 1.22147 0.93387 0.93983 0.86522 0.93434 1.23431 0.92689 0.85601 1.05768 1.47628 1.44224 1.34705 1.04581 1.16683 0.81156 0.81596 0.81934 1.90794 1.33897 1.33018 1.85312 1.22605 1.05214 0.99251 0.84873 1.70357 1.10672 1.09319 1.24285 1.22728 1.04659 1.02135 0.87879 1.23001 0.99482 0.94745 0.99178 1.42897 1.36475 1.26808 1.06634 0.73321 1.21918 0.99322 0.93851 0.85979 1.22496 1.02867 0.97166 0.97758 1.22094 0.89971 0.88391 0.99882 1.86423 1.48067 1.55650 1.38930 0.93791 0.78130 0.95987 0.93972 0.90450 0.84326 0.80115 0.79675 0.91332 0.89058 0.89942 0.89664 0.89355 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 3 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.23 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.53 5.54 -59.91 -0.33 -19.86 16 10 C 0.17 3.67 5.92 -4.04 -0.02 3.65 16 11 C 0.10 1.83 2.24 -25.77 -0.06 1.77 16 12 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 13 C 0.05 0.72 4.46 -3.83 -0.02 0.70 16 14 N -0.58 -8.08 2.19 -173.74 -0.38 -8.46 16 15 C 0.60 8.91 7.63 -12.52 -0.10 8.81 16 16 O -0.55 -8.90 16.39 5.28 0.09 -8.81 16 17 C 0.14 1.94 7.63 -154.52 -1.18 0.76 16 18 N -0.42 -6.10 7.01 -11.26 -0.08 -6.18 16 19 C -0.02 -0.25 11.85 -17.96 -0.21 -0.47 16 20 C -0.03 -0.23 12.00 -16.93 -0.20 -0.43 16 21 N -0.53 -5.46 6.15 -10.78 -0.07 -5.53 16 22 H 0.43 3.42 8.96 -40.82 -0.37 3.05 16 23 C 0.11 1.29 6.17 -3.19 -0.02 1.27 16 24 C -0.16 -1.88 5.78 -27.18 -0.16 -2.03 16 25 C 0.07 1.09 6.38 36.42 0.23 1.32 16 26 O -0.37 -7.03 9.38 -26.51 -0.25 -7.27 16 27 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.39 11.15 7.65 -40.82 -0.31 10.84 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.14 2.07 4.68 -54.16 -0.25 1.82 16 33 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.19 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.09 6.97 -51.93 -0.36 0.73 16 37 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.71 7.40 -51.93 -0.38 0.32 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -35.61 328.89 -7.78 -43.39 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.44 Total: 10.55 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.98 Total: 7.93 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.13 Total: -68.68 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.16 Total: -16.09 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.61 -7.78 -43.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200429698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.531 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds