Wall clock time and date at job start Tue Mar 31 2020 03:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47298 * 274.98903 * 3 2 1 5 5 H 1.48493 * 109.47331 * 34.99088 * 3 2 1 6 6 H 1.48499 * 109.46687 * 154.99422 * 3 2 1 7 7 C 1.38806 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00279 * 187.04582 * 7 2 1 9 9 N 1.36940 * 120.00271 * 7.04492 * 7 2 1 10 10 C 1.47469 * 125.63066 * 174.80602 * 9 7 2 11 11 C 1.54907 * 104.81261 * 204.05314 * 10 9 7 12 12 H 1.08993 * 111.00953 * 81.13800 * 11 10 9 13 13 N 1.46506 * 111.00534 * 204.95133 * 11 10 9 14 14 C 1.34770 * 119.99940 * 270.41709 * 13 11 10 15 15 O 1.21277 * 120.00197 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00114 * 179.97438 * 14 13 11 17 17 C 1.52996 * 109.47256 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.47090 * 180.02562 * 17 16 14 19 19 C 1.36883 * 126.40217 * 270.29141 * 18 17 16 20 20 C 1.34665 * 106.81939 * 180.18827 * 19 18 17 21 21 N 1.34124 * 108.01949 * 359.58868 * 20 19 18 22 22 C 1.30502 * 109.26080 * 0.25947 * 21 20 19 23 23 C 1.55162 * 101.61705 * 323.04293 * 11 10 9 24 24 H 1.08994 * 110.72307 * 153.84440 * 23 11 10 25 25 O 1.42900 * 110.71939 * 277.12259 * 23 11 10 26 26 C 1.47023 * 125.64761 * 354.78666 * 9 7 2 27 27 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.34569 * 85.23358 * 10 9 7 29 29 H 1.08996 * 110.40677 * 322.89839 * 10 9 7 30 30 H 0.96998 * 119.99586 * 90.41363 * 13 11 10 31 31 H 1.09008 * 109.46894 * 60.00174 * 16 14 13 32 32 H 1.08997 * 109.47131 * 300.00838 * 16 14 13 33 33 H 1.09000 * 109.47121 * 60.00402 * 17 16 14 34 34 H 1.08992 * 109.47467 * 300.00416 * 17 16 14 35 35 H 1.08006 * 126.58575 * 0.08010 * 19 18 17 36 36 H 1.08004 * 125.99018 * 179.84495 * 20 19 18 37 37 H 1.07996 * 125.65558 * 180.02562 * 22 21 20 38 38 H 0.96703 * 113.99654 * 179.97438 * 25 23 11 39 39 H 1.09001 * 109.88259 * 59.57765 * 26 9 7 40 40 H 1.09004 * 110.00744 * 298.48318 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2058 0.1142 9 7 1.3333 -2.3835 -0.1465 10 6 1.9500 -3.7171 -0.2728 11 6 0.8909 -4.5751 -1.0088 12 1 0.9250 -4.4004 -2.0841 13 7 1.0644 -5.9978 -0.7052 14 6 1.8712 -6.7571 -1.4726 15 8 2.4539 -6.2626 -2.4142 16 6 2.0501 -8.2205 -1.1599 17 6 3.0083 -8.8456 -2.1757 18 7 3.1818 -10.2682 -1.8721 19 6 4.1269 -10.8130 -1.0452 20 6 3.9320 -12.1455 -1.0553 21 7 2.8905 -12.4064 -1.8592 22 6 2.4360 -11.2867 -2.3519 23 6 -0.4289 -4.0332 -0.3989 24 1 -1.2594 -4.1730 -1.0908 25 8 -0.7021 -4.6621 0.8548 26 6 -0.1283 -2.5323 -0.2028 27 1 -0.4850 0.8400 0.0004 28 1 2.1574 -4.1336 0.7128 29 1 2.8658 -3.6581 -0.8610 30 1 0.5987 -6.3932 0.0482 31 1 1.0849 -8.7242 -1.2138 32 1 2.4615 -8.3299 -0.1565 33 1 3.9736 -8.3420 -2.1223 34 1 2.5965 -8.7361 -3.1789 35 1 4.8844 -10.2773 -0.4924 36 1 4.5101 -12.8756 -0.5085 37 1 1.6014 -11.1904 -3.0306 38 1 -1.5166 -4.3580 1.2781 39 1 -0.5270 -1.9618 -1.0417 40 1 -0.5749 -2.1833 0.7283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220102161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:40 Heat of formation + Delta-G solvation = 9.158293 kcal Electronic energy + Delta-G solvation = -23191.893910 eV Core-core repulsion = 19622.857350 eV Total energy + Delta-G solvation = -3569.036560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23237 -39.89721 -38.08049 -35.06500 -34.88202 -34.09224 -31.84861 -30.74835 -29.58167 -28.52747 -27.17766 -25.08102 -24.10688 -21.53192 -21.23347 -20.74387 -20.39419 -20.00124 -18.02106 -17.39021 -16.94084 -16.49376 -15.81671 -15.71392 -15.14355 -14.81587 -14.53373 -14.17247 -14.08004 -13.83325 -13.53307 -13.29202 -13.26175 -12.76257 -12.68080 -12.63924 -12.30032 -11.68828 -11.38732 -11.01926 -10.91599 -10.60230 -10.56088 -10.22122 -10.18837 -10.04777 -9.90047 -9.73811 -9.39741 -8.83676 -8.73832 -8.69387 -6.94443 -5.82481 -3.14598 1.82989 2.45756 2.58575 2.98169 3.27657 3.36280 3.41870 3.43321 4.36140 4.36569 4.40368 4.46709 4.51391 4.64104 4.84923 5.05291 5.08858 5.19651 5.26124 5.29584 5.43029 5.44945 5.50301 5.63236 5.78546 5.96974 6.05428 6.12118 6.46896 6.51993 6.56564 6.81594 6.94559 7.24724 7.37027 7.60373 7.68591 7.86357 7.97244 8.12888 8.25780 9.11049 9.71364 10.35665 11.30198 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.002776 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.226774 B =10084.793226 C =10558.607833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.132 3.868 11 C 0.138 3.862 12 H 0.105 0.895 13 N -0.704 5.704 14 C 0.514 3.486 15 O -0.544 6.544 16 C -0.156 4.156 17 C 0.120 3.880 18 N -0.458 5.458 19 C -0.055 4.055 20 C -0.034 4.034 21 N -0.499 5.499 22 C 0.180 3.820 23 C 0.068 3.932 24 H 0.061 0.939 25 O -0.568 6.568 26 C 0.153 3.847 27 H 0.253 0.747 28 H 0.025 0.975 29 H 0.045 0.955 30 H 0.408 0.592 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.204 0.796 38 H 0.380 0.620 39 H 0.057 0.943 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -18.247 -1.387 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.005 3.995 11 C 0.032 3.968 12 H 0.122 0.878 13 N -0.355 5.355 14 C 0.299 3.701 15 O -0.422 6.422 16 C -0.197 4.197 17 C -0.003 4.003 18 N -0.140 5.140 19 C -0.188 4.188 20 C -0.182 4.182 21 N -0.217 5.217 22 C -0.102 4.102 23 C 0.008 3.992 24 H 0.079 0.921 25 O -0.375 6.375 26 C 0.028 3.972 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.244 0.756 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.220 0.780 38 H 0.228 0.772 39 H 0.075 0.925 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.316 -18.583 -2.378 18.781 hybrid contribution -0.063 1.953 0.786 2.106 sum 1.253 -16.630 -1.592 16.753 Atomic orbital electron populations 1.69921 1.04972 1.25235 1.57077 1.24817 0.95767 0.97765 1.02020 0.86067 0.78695 0.83276 0.77574 1.21502 1.21729 1.20569 1.19086 0.91233 0.82292 1.42870 0.90241 1.44290 1.01221 1.00970 1.86257 1.21831 0.94669 0.86380 0.96651 1.22389 0.95436 0.78749 1.00218 0.87760 1.45779 1.47152 1.10146 1.32436 1.20246 0.79293 0.87876 0.82722 1.90745 1.47262 1.74545 1.29678 1.21975 1.02195 0.93788 1.01740 1.21631 1.02086 0.76714 0.99824 1.45675 1.25181 1.08108 1.35079 1.22813 0.98723 0.95542 1.01699 1.22310 0.98926 0.93947 1.02974 1.70293 1.11897 1.26692 1.12787 1.25040 1.00009 0.81997 1.03182 1.23505 0.95316 0.95679 0.84707 0.92072 1.86236 1.47817 1.67344 1.36072 1.21875 0.85684 0.87924 1.01764 0.93658 0.95759 0.93696 0.75640 0.88185 0.88110 0.87925 0.87778 0.80899 0.81467 0.77983 0.77161 0.92469 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.36 55.49 0.57 -25.74 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.27 10.26 -15.06 -0.15 -6.42 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.60 -15.06 3.40 -170.04 -0.58 -15.64 16 10 C 0.13 2.78 6.92 -2.51 -0.02 2.76 16 11 C 0.14 2.38 3.25 -65.78 -0.21 2.17 16 12 H 0.10 1.93 7.63 -51.93 -0.40 1.53 16 13 N -0.70 -9.49 5.18 -51.73 -0.27 -9.76 16 14 C 0.51 6.51 7.83 -10.99 -0.09 6.42 16 15 O -0.54 -8.93 15.67 5.56 0.09 -8.84 16 16 C -0.16 -1.29 6.02 -27.88 -0.17 -1.46 16 17 C 0.12 0.98 5.44 -4.04 -0.02 0.96 16 18 N -0.46 -4.03 2.75 -118.58 -0.33 -4.36 16 19 C -0.05 -0.48 11.58 -16.56 -0.19 -0.67 16 20 C -0.03 -0.34 11.87 -17.82 -0.21 -0.55 16 21 N -0.50 -5.90 11.25 -14.66 -0.16 -6.06 16 22 C 0.18 1.71 12.56 -90.37 -1.14 0.57 16 23 C 0.07 1.15 4.20 -24.89 -0.10 1.04 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 O -0.57 -8.44 12.14 -35.23 -0.43 -8.87 16 26 C 0.15 3.47 5.15 -3.06 -0.02 3.45 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.41 4.82 7.57 -40.82 -0.31 4.51 16 31 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.17 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.38 4.34 9.12 45.56 0.42 4.75 16 39 H 0.06 1.43 7.30 -51.93 -0.38 1.06 16 40 H 0.05 1.28 7.54 -51.93 -0.39 0.89 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -34.18 338.58 -8.27 -42.45 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.83 Total: 6.93 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.42 Total: 7.97 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.76 Total: -61.56 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.34 Total: -17.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.18 -8.27 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220102161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.604 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds