Wall clock time and date at job start Tue Mar 31 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38552 * 120.02073 * 2 1 4 4 C 1.40065 * 117.82075 * 179.97438 * 3 2 1 5 5 C 1.48131 * 121.14670 * 179.97438 * 4 3 2 6 6 O 1.21521 * 120.00337 * 173.99805 * 5 4 3 7 7 N 1.34777 * 120.00330 * 354.00386 * 5 4 3 8 8 C 1.46498 * 120.00452 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47217 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.46627 * 60.00050 * 9 8 7 11 11 O 1.42905 * 109.47040 * 300.00574 * 9 8 7 12 12 C 1.52993 * 109.47368 * 179.97438 * 9 8 7 13 13 N 1.46494 * 109.47562 * 185.00064 * 12 9 8 14 14 C 1.36935 * 120.00490 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99905 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00244 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99929 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46966 * 90.00158 * 18 16 14 20 20 H 1.48501 * 109.47265 * 210.00097 * 18 16 14 21 21 H 1.48502 * 109.47192 * 330.00425 * 18 16 14 22 22 C 1.39772 * 117.70624 * 359.97438 * 4 3 2 23 23 C 1.50705 * 120.17018 * 180.02562 * 22 4 3 24 24 N 1.31893 * 119.65840 * 0.27658 * 22 4 3 25 25 N 1.28276 * 122.32420 * 359.42335 * 24 22 4 26 26 H 1.08998 * 109.47499 * 89.99999 * 1 2 3 27 27 H 1.08999 * 109.47175 * 210.00124 * 1 2 3 28 28 H 1.09003 * 109.47118 * 329.99909 * 1 2 3 29 29 H 1.07996 * 121.08491 * 359.95565 * 3 2 1 30 30 H 0.97002 * 119.99120 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.46954 * 300.00341 * 8 7 5 32 32 H 1.09006 * 109.46827 * 59.99988 * 8 7 5 33 33 H 0.96699 * 113.99793 * 299.99395 * 11 9 8 34 34 H 1.09001 * 109.47403 * 305.00806 * 12 9 8 35 35 H 1.09007 * 109.46802 * 65.00168 * 12 9 8 36 36 H 0.97009 * 119.99777 * 0.02562 * 13 12 9 37 37 H 0.97005 * 119.99984 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.46937 * 83.41142 * 23 22 4 39 39 H 1.09000 * 109.47073 * 203.41066 * 23 22 4 40 40 H 1.08999 * 109.47130 * 323.41458 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5997 1.1459 0.0006 5 6 4.4140 2.3833 0.0000 6 8 5.6223 2.3157 0.1106 7 7 3.8149 3.5843 -0.1229 8 6 4.6201 4.8081 -0.1229 9 6 3.7022 6.0226 -0.2755 10 1 2.9969 6.0516 0.5552 11 8 2.9838 5.9250 -1.5070 12 6 4.5430 7.3008 -0.2748 13 7 3.6578 8.4678 -0.3007 14 6 4.1887 9.7300 -0.3053 15 1 5.2602 9.8652 -0.2904 16 6 3.3499 10.8357 -0.3304 17 7 2.0442 10.6709 -0.3491 18 14 4.0742 12.5576 -0.3360 19 1 4.2891 12.9996 -1.7373 20 1 3.1372 13.4910 0.3393 21 1 5.3722 12.5510 0.3855 22 6 4.2016 -0.1156 0.0016 23 6 5.7037 -0.2382 0.0028 24 7 3.4482 -1.1982 -0.0035 25 7 2.1667 -1.1420 0.0015 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6783 2.1452 -0.0007 30 1 2.8504 3.6382 -0.2114 31 1 5.1684 4.8823 0.8163 32 1 5.3250 4.7792 -0.9538 33 1 3.5493 5.8945 -2.2908 34 1 5.1578 7.3309 0.6248 35 1 5.1861 7.3130 -1.1549 36 1 2.6954 8.3463 -0.3145 37 1 1.4581 11.4436 -0.3670 38 1 6.0746 -0.1497 1.0240 39 1 5.9894 -1.2078 -0.4048 40 1 6.1334 0.5544 -0.6097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496987887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:50 Heat of formation + Delta-G solvation = -21.564466 kcal Electronic energy + Delta-G solvation = -22765.121682 eV Core-core repulsion = 19194.752883 eV Total energy + Delta-G solvation = -3570.368799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71790 -39.81172 -37.81151 -35.18289 -34.45495 -34.14817 -33.82517 -31.43976 -30.40481 -29.05151 -27.15752 -26.07337 -24.86562 -23.24009 -22.46041 -21.61139 -20.79313 -18.25950 -18.03858 -17.23503 -16.38482 -16.30769 -16.06654 -15.79284 -15.61717 -14.82207 -14.63895 -14.51815 -13.94500 -13.76693 -13.72513 -13.54914 -13.11209 -12.97686 -12.84221 -12.67843 -12.45830 -12.38106 -11.98457 -11.36149 -11.03671 -10.87137 -10.80215 -10.65347 -10.62611 -10.24725 -9.95654 -9.86417 -9.81993 -9.60021 -9.35691 -8.97550 -7.01950 -5.83130 -3.13260 -0.06444 0.45367 2.41175 2.65790 3.19326 3.39130 3.44352 3.46044 3.54238 3.84462 3.97035 4.18687 4.33052 4.45446 4.58411 4.69672 4.74276 4.84933 5.06805 5.08684 5.12561 5.34728 5.39625 5.44063 5.47172 5.49225 5.60146 5.68330 5.77549 5.80390 5.96845 6.08912 6.17200 6.40632 6.55338 7.09180 7.61852 7.74413 7.81449 8.30251 8.34803 9.46702 10.02001 10.37438 11.39143 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.002645 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.832907 B =10583.531213 C =11417.888241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.058 3.942 3 C -0.079 4.079 4 C -0.129 4.129 5 C 0.560 3.440 6 O -0.520 6.520 7 N -0.709 5.709 8 C 0.089 3.911 9 C 0.088 3.912 10 H 0.106 0.894 11 O -0.553 6.553 12 C 0.128 3.872 13 N -0.726 5.726 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.117 3.883 23 C -0.105 4.105 24 N -0.242 5.242 25 N -0.225 5.225 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.405 0.595 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.374 0.626 34 H 0.029 0.971 35 H 0.024 0.976 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -21.549 0.235 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.143 4.143 5 C 0.345 3.655 6 O -0.397 6.397 7 N -0.361 5.361 8 C -0.035 4.035 9 C 0.028 3.972 10 H 0.124 0.876 11 O -0.358 6.358 12 C -0.001 4.001 13 N -0.371 5.371 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.028 4.028 23 C -0.163 4.163 24 N -0.084 5.084 25 N -0.068 5.068 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.174 0.826 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.295 -23.068 0.727 23.082 hybrid contribution 0.063 2.633 -0.363 2.659 sum 0.357 -20.435 0.364 20.441 Atomic orbital electron populations 1.20720 0.86775 1.04456 1.04029 1.22892 0.99436 0.89842 0.96473 1.22602 0.93320 1.00665 0.94337 1.21115 0.94328 0.95704 1.03192 1.17863 0.87303 0.82847 0.77530 1.90768 1.13475 1.86467 1.48952 1.45822 1.11599 1.05469 1.73235 1.22221 0.94446 0.83153 1.03705 1.22423 0.94338 0.92381 0.88052 0.87607 1.86577 1.37363 1.96417 1.15457 1.21188 0.93185 0.86760 0.98981 1.42230 1.05290 1.00175 1.89388 1.19208 0.91861 0.83215 1.43372 0.91175 1.24765 0.95346 0.97979 1.02686 1.69672 1.01546 1.29379 1.57185 0.86176 0.77871 0.84444 0.77587 1.21634 1.21686 1.20713 1.23151 0.99774 0.88459 0.91374 1.20971 0.86311 1.04305 1.04686 1.73078 0.98930 1.26280 1.10137 1.72813 1.01843 1.24986 1.07141 0.89503 0.89679 0.89849 0.82611 0.75895 0.89857 0.90515 0.77846 0.95286 0.95835 0.77725 0.93417 0.89368 0.90565 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 36.00 0.37 -0.19 16 2 C 0.06 0.52 6.86 -82.45 -0.57 -0.05 16 3 C -0.08 -0.66 9.34 -38.78 -0.36 -1.02 16 4 C -0.13 -1.34 5.92 -104.58 -0.62 -1.96 16 5 C 0.56 6.32 7.74 -12.20 -0.09 6.23 16 6 O -0.52 -7.10 13.54 5.35 0.07 -7.03 16 7 N -0.71 -7.09 5.41 -61.16 -0.33 -7.42 16 8 C 0.09 1.00 5.34 -4.04 -0.02 0.98 16 9 C 0.09 1.20 3.08 -26.73 -0.08 1.12 16 10 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 11 O -0.55 -7.77 13.03 -35.23 -0.46 -8.23 16 12 C 0.13 2.30 5.90 -4.05 -0.02 2.28 16 13 N -0.73 -17.64 5.55 -59.91 -0.33 -17.98 16 14 C -0.25 -6.71 9.99 -15.06 -0.15 -6.86 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 18 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.12 1.33 6.91 -81.99 -0.57 0.76 16 23 C -0.10 -1.03 8.96 36.01 0.32 -0.71 16 24 N -0.24 -3.04 11.42 33.81 0.39 -2.65 16 25 N -0.22 -2.65 11.40 33.58 0.38 -2.27 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.16 0.83 6.65 -52.49 -0.35 0.48 16 30 H 0.40 3.38 6.57 -40.82 -0.27 3.11 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.37 4.31 9.05 45.56 0.41 4.72 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.39 10.10 7.67 -40.82 -0.31 9.79 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.11 5.95 -51.93 -0.31 0.80 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -33.76 343.41 -5.89 -39.66 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.60 Total: 10.60 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.89 Total: 0.16 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.83 Total: -57.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.39 Total: -15.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.76 -5.89 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496987887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.094 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds