Wall clock time and date at job start Tue Mar 31 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21571 * 120.00099 * 359.97438 * 16 15 14 18 18 C 1.47718 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31846 * 126.56823 * 359.68870 * 18 16 15 20 20 N 1.28462 * 110.05119 * 179.88517 * 19 18 16 21 21 H 0.97005 * 124.87751 * 180.19221 * 20 19 18 22 22 C 1.35251 * 110.23498 * 0.39814 * 20 19 18 23 23 C 1.35043 * 107.07704 * 359.75116 * 22 20 19 24 24 C 1.50945 * 110.53128 * 180.02562 * 23 22 20 25 25 C 1.54514 * 104.96105 * 16.77049 * 24 23 22 26 26 C 1.51234 * 142.76723 * 179.71713 * 22 20 19 27 27 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 30 30 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 31 31 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 32 32 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 33 33 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 34 34 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 35 35 H 1.08999 * 110.34228 * 135.63870 * 24 23 22 36 36 H 1.08997 * 110.34424 * 257.79417 * 24 23 22 37 37 H 1.09005 * 110.93272 * 92.68639 * 25 24 23 38 38 H 1.09004 * 110.93224 * 216.31070 * 25 24 23 39 39 H 1.08997 * 110.32642 * 44.31218 * 26 22 20 40 40 H 1.08996 * 110.41875 * 282.13540 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5238 -8.7497 -0.0664 18 6 0.3761 -9.6458 -0.2670 19 7 -0.9361 -9.5530 -0.3555 20 7 -1.4551 -10.7242 -0.4507 21 1 -2.4048 -10.9053 -0.5298 22 6 -0.4874 -11.6686 -0.4202 23 6 0.6931 -11.0231 -0.3042 24 6 1.8344 -12.0102 -0.2634 25 6 1.2383 -13.3316 -0.7983 26 6 -0.2616 -13.1632 -0.4684 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6854 -3.7149 0.8878 30 1 2.6841 -3.7141 -0.8921 31 1 0.7352 -4.7907 1.9961 32 1 2.5209 -6.1643 -0.8445 33 1 2.3866 -6.2426 0.9287 34 1 -0.0699 -7.0769 -0.1871 35 1 2.6487 -11.6746 -0.9054 36 1 2.1877 -12.1388 0.7597 37 1 1.3930 -13.4214 -1.8736 38 1 1.6590 -14.1892 -0.2733 39 1 -0.8737 -13.6136 -1.2498 40 1 -0.4900 -13.6137 0.4974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667849614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:36 Heat of formation + Delta-G solvation = -26.547839 kcal Electronic energy + Delta-G solvation = -22651.491526 eV Core-core repulsion = 19080.906631 eV Total energy + Delta-G solvation = -3570.584894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.92102 -40.62991 -38.91118 -37.73656 -36.08087 -35.33944 -33.28269 -32.97464 -30.62933 -29.73938 -28.52144 -27.29921 -25.28357 -23.87478 -22.78879 -22.53472 -21.04632 -21.01547 -19.24226 -18.59680 -18.29636 -17.52835 -17.38240 -17.05741 -16.48666 -16.36972 -15.90164 -15.52032 -15.36335 -14.99118 -14.74601 -14.34202 -14.18919 -13.87231 -13.75936 -13.62725 -13.26090 -12.96191 -12.84252 -12.75345 -12.16807 -12.05481 -12.03013 -11.98693 -11.81813 -11.70563 -11.45153 -11.00308 -10.91297 -10.51332 -10.13284 -9.62578 -9.01768 -7.94976 -5.24842 0.42139 1.05118 1.47356 1.49572 1.58043 1.67420 2.06270 2.26747 2.55982 3.17942 3.36083 3.45845 3.55621 3.59015 3.70896 3.99894 4.08226 4.18448 4.22672 4.25481 4.40652 4.59939 4.64905 4.72523 4.81956 4.85906 4.92746 4.99205 5.08732 5.17938 5.18831 5.27795 5.38030 5.39032 5.47944 6.08561 6.25904 6.37079 6.76892 6.80893 7.07344 7.32947 8.08145 8.31634 9.28352 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.046879 B = 0.002371 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.143929 B =11808.028847 C =12255.031113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.108 3.892 12 H 0.099 0.901 13 O -0.564 6.564 14 C 0.102 3.898 15 N -0.702 5.702 16 C 0.598 3.402 17 O -0.566 6.566 18 C -0.024 4.024 19 N -0.263 5.263 20 N -0.347 5.347 21 H 0.461 0.539 22 C -0.005 4.005 23 C -0.197 4.197 24 C -0.053 4.053 25 C -0.107 4.107 26 C -0.031 4.031 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.385 0.615 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -32.265 -0.861 32.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.384 5.384 10 C -0.004 4.004 11 C 0.048 3.952 12 H 0.117 0.883 13 O -0.370 6.370 14 C -0.023 4.023 15 N -0.353 5.353 16 C 0.383 3.617 17 O -0.444 6.444 18 C -0.182 4.182 19 N -0.100 5.100 20 N -0.063 5.063 21 H 0.309 0.691 22 C -0.133 4.133 23 C -0.207 4.207 24 C -0.091 4.091 25 C -0.144 4.144 26 C -0.070 4.070 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.234 0.766 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.434 -31.440 -1.257 31.559 hybrid contribution 0.087 1.062 0.332 1.116 sum -2.347 -30.379 -0.926 30.483 Atomic orbital electron populations 1.69846 1.06707 1.26102 1.59280 1.25635 0.96438 1.01310 1.03617 0.85092 0.77667 0.79225 0.77461 1.21329 1.22189 1.19308 1.19660 0.91559 0.85276 1.41467 0.90449 1.42422 1.05792 1.00757 1.89382 1.21388 0.94112 0.85564 0.99349 1.22100 0.92309 0.91281 0.89516 0.88315 1.86564 1.37637 1.96398 1.16411 1.21964 0.91958 0.84824 1.03538 1.45720 1.11781 1.04702 1.73101 1.17190 0.86564 0.81976 0.75949 1.90753 1.16639 1.84917 1.52100 1.21284 0.90465 0.93907 1.12577 1.73678 1.09136 1.07117 1.20087 1.42714 1.10751 1.01169 1.51623 0.69079 1.22818 0.87696 0.97529 1.05280 1.21317 0.98974 0.91359 1.09033 1.20527 0.94376 0.92197 1.02034 1.22477 0.93073 0.96424 1.02475 1.20847 0.97928 0.83261 1.04975 0.93999 0.79114 0.94858 0.94641 0.76615 0.90021 0.90303 0.74948 0.91968 0.90354 0.89994 0.87270 0.87713 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -38.32 5.49 -343.46 -1.89 -40.21 16 10 C 0.12 4.83 5.92 86.38 0.51 5.34 16 11 C 0.11 3.45 3.09 30.60 0.09 3.55 16 12 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 13 O -0.56 -18.78 13.03 -148.98 -1.94 -20.72 16 14 C 0.10 2.83 5.31 86.38 0.46 3.29 16 15 N -0.70 -19.57 5.50 -466.09 -2.56 -22.13 16 16 C 0.60 18.43 7.83 86.75 0.68 19.11 16 17 O -0.57 -20.44 16.93 -3.94 -0.07 -20.51 16 18 C -0.02 -0.64 7.13 42.42 0.30 -0.33 16 19 N -0.26 -6.07 11.93 -48.23 -0.58 -6.64 16 20 N -0.35 -5.26 6.84 -47.57 -0.33 -5.59 16 21 H 0.46 3.18 8.96 -219.99 -1.97 1.20 16 22 C -0.01 -0.08 8.12 41.47 0.34 0.26 16 23 C -0.20 -4.34 6.82 -19.75 -0.13 -4.48 16 24 C -0.05 -0.89 6.78 30.44 0.21 -0.69 16 25 C -0.11 -0.80 7.13 31.62 0.23 -0.57 16 26 C -0.03 -0.19 6.78 30.52 0.21 0.02 16 27 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.38 21.15 7.54 -92.71 -0.70 20.45 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.38 10.66 9.05 -74.06 -0.67 9.99 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.41 11.03 8.20 -92.71 -0.76 10.27 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -78.53 343.51 -3.84 -82.38 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -2.99 Total: 36.87 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.19 Total: 8.16 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -5.07 Total: -135.03 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.01 Total: -41.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.53 -3.84 -82.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667849614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.829 kcal (2) G-P(sol) polarization free energy of solvation -78.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds