Wall clock time and date at job start Tue Mar 31 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99784 * 2 1 4 4 H 1.48496 * 109.47032 * 240.00097 * 3 2 1 5 5 H 1.48499 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46748 * 120.00023 * 3 2 1 7 7 C 1.38812 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99333 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99237 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46605 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.55478 * 59.87087 * 11 10 9 13 13 C 1.53298 * 109.50844 * 179.97438 * 11 10 9 14 14 N 1.47156 * 108.38111 * 172.22365 * 13 11 10 15 15 C 1.34778 * 120.98038 * 129.44485 * 14 13 11 16 16 O 1.21279 * 119.99890 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.46506 * 109.46690 * 179.97438 * 17 15 14 19 19 C 1.34949 * 126.03084 * 124.71334 * 18 17 15 20 20 C 1.35321 * 107.74192 * 179.83771 * 19 18 17 21 21 C 1.39871 * 107.91917 * 0.42736 * 20 19 18 22 22 N 1.30835 * 108.20428 * 359.73230 * 21 20 19 23 23 C 1.47148 * 118.03566 * 309.46168 * 14 13 11 24 24 C 1.53297 * 108.38428 * 50.53861 * 23 14 13 25 25 O 1.42955 * 109.51067 * 299.74087 * 11 10 9 26 26 H 0.96997 * 119.99901 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00508 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47640 * 59.99513 * 10 9 7 29 29 H 1.09001 * 109.46588 * 299.99064 * 10 9 7 30 30 H 1.09001 * 109.68481 * 52.50181 * 13 11 10 31 31 H 1.08998 * 109.68011 * 291.94206 * 13 11 10 32 32 H 1.08995 * 109.47161 * 299.99084 * 17 15 14 33 33 H 1.08991 * 109.47095 * 60.00076 * 17 15 14 34 34 H 1.07993 * 126.13268 * 0.02562 * 19 18 17 35 35 H 1.08002 * 126.04032 * 180.16661 * 20 19 18 36 36 H 1.08003 * 125.89819 * 179.72235 * 21 20 19 37 37 H 1.09005 * 109.67946 * 170.25583 * 23 14 13 38 38 H 1.08994 * 109.68347 * 290.77863 * 23 14 13 39 39 H 1.09004 * 109.51370 * 67.62117 * 24 23 14 40 40 H 1.08999 * 109.51408 * 187.71950 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4353 -4.7617 -0.8897 13 6 1.8295 -6.1478 -0.0018 14 7 0.8625 -7.2409 0.1865 15 6 0.8487 -8.3051 -0.6404 16 8 1.6408 -8.3716 -1.5564 17 6 -0.1509 -9.4125 -0.4267 18 7 0.0374 -10.4444 -1.4495 19 6 0.2571 -11.7564 -1.2224 20 6 0.3730 -12.3690 -2.4234 21 6 0.2286 -11.3965 -3.4183 22 7 0.0274 -10.2425 -2.8357 23 6 -0.0891 -7.1376 1.3041 24 6 -0.7612 -5.7613 1.2411 25 8 0.2451 -4.7485 1.1685 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6849 -3.7145 0.8893 29 1 2.6847 -3.7144 -0.8906 30 1 2.5541 -6.1543 0.8124 31 1 2.3451 -6.2738 -0.9538 32 1 -0.0042 -9.8487 0.5613 33 1 -1.1609 -9.0092 -0.4997 34 1 0.3250 -12.2326 -0.2555 35 1 0.5502 -13.4220 -2.5851 36 1 0.2753 -11.5685 -4.4835 37 1 -0.8441 -7.9191 1.2168 38 1 0.4422 -7.2444 2.2497 39 1 -1.3968 -5.7065 0.3572 40 1 -1.3667 -5.6105 2.1348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673252429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:40 Heat of formation + Delta-G solvation = 35.091279 kcal Electronic energy + Delta-G solvation = -23368.176512 eV Core-core repulsion = 19800.264491 eV Total energy + Delta-G solvation = -3567.912021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43064 -40.30796 -38.36463 -35.16041 -34.43210 -33.63801 -32.21632 -30.36970 -30.17851 -28.71852 -27.48959 -25.33840 -23.57586 -22.66372 -21.42898 -21.29758 -20.80792 -19.39018 -17.80593 -17.48938 -17.06607 -16.45038 -16.06011 -15.88248 -15.15889 -14.87319 -14.66890 -14.53908 -14.26701 -13.85784 -13.57413 -13.48290 -13.17048 -12.99891 -12.71304 -12.60396 -12.47755 -12.16849 -11.64709 -11.06160 -10.91091 -10.80837 -10.77501 -10.54743 -10.25188 -10.05873 -9.95104 -9.69265 -9.52541 -8.85673 -8.82275 -8.64534 -6.88928 -5.72204 -3.01061 1.63869 2.10299 2.28098 2.70017 2.71122 3.47165 3.50917 3.52297 3.86618 3.94567 4.21244 4.51562 4.55019 4.58250 4.66079 4.72993 4.84443 4.96769 5.05476 5.23985 5.29338 5.38757 5.53873 5.59616 5.60168 5.62805 5.78851 5.81959 5.90658 6.16856 6.26676 6.43947 6.54634 6.67205 6.69297 7.06038 7.40450 7.52799 7.71934 7.85699 8.45951 9.57607 10.14445 10.50560 11.50547 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.002799 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.003961 B = 9999.626232 C =10348.483728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.087 3.913 14 N -0.613 5.613 15 C 0.502 3.498 16 O -0.508 6.508 17 C 0.118 3.882 18 N -0.365 5.365 19 C 0.050 3.950 20 C -0.271 4.271 21 C 0.039 3.961 22 N -0.265 5.265 23 C 0.069 3.931 24 C 0.045 3.955 25 O -0.355 6.355 26 H 0.255 0.745 27 H 0.388 0.612 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.147 0.853 36 H 0.183 0.817 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -25.976 2.580 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.035 4.035 14 N -0.349 5.349 15 C 0.287 3.713 16 O -0.381 6.381 17 C -0.008 4.008 18 N -0.148 5.148 19 C -0.095 4.095 20 C -0.300 4.300 21 C -0.148 4.148 22 N -0.085 5.085 23 C -0.054 4.054 24 C -0.033 4.033 25 O -0.273 6.273 26 H 0.065 0.935 27 H 0.222 0.778 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.200 0.800 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.772 -24.398 2.153 24.649 hybrid contribution 0.189 -0.214 0.135 0.316 sum -2.583 -24.611 2.288 24.852 Atomic orbital electron populations 1.69667 1.05121 1.25697 1.57599 1.24747 0.95530 0.97680 1.02994 0.86247 0.78491 0.83476 0.77842 1.21260 1.21701 1.21263 1.19184 0.90989 0.84091 1.42877 0.91192 1.42202 1.06047 0.99419 1.89355 1.20623 0.92333 0.84696 0.98811 1.22810 0.93049 0.94200 0.88448 0.91815 1.22368 0.91441 0.85396 1.04306 1.48151 1.35846 1.20807 1.30088 1.20475 0.85375 0.83059 0.82386 1.90796 1.39647 1.77646 1.30053 1.21505 1.00574 0.88260 0.90434 1.48132 1.55999 1.05587 1.05066 1.22531 1.01978 0.84307 1.00700 1.21498 1.16143 1.01048 0.91326 1.23956 1.00196 0.90119 1.00572 1.77552 1.22182 1.22648 0.86126 1.22582 0.92737 0.99893 0.90187 1.22913 0.90946 0.86445 1.03022 1.88179 1.46179 1.50409 1.42520 0.93501 0.77823 0.95349 0.94666 0.90239 0.87995 0.85794 0.86768 0.80985 0.83486 0.80036 0.89432 0.89884 0.92717 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.06 5.50 -59.90 -0.33 -19.39 16 10 C 0.16 3.38 5.95 -4.04 -0.02 3.35 16 11 C 0.07 1.25 2.86 -26.58 -0.08 1.18 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.24 5.93 -3.53 -0.02 1.22 16 14 N -0.61 -7.23 3.02 -172.27 -0.52 -7.75 16 15 C 0.50 6.36 7.74 -10.98 -0.09 6.28 16 16 O -0.51 -8.85 15.17 5.56 0.08 -8.77 16 17 C 0.12 0.99 5.36 -5.19 -0.03 0.96 16 18 N -0.36 -4.05 3.40 -62.55 -0.21 -4.27 16 19 C 0.05 0.42 11.45 -17.22 -0.20 0.23 16 20 C -0.27 -2.43 10.80 -40.01 -0.43 -2.86 16 21 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 22 N -0.26 -3.70 11.64 30.63 0.36 -3.35 16 23 C 0.07 0.58 6.54 -3.53 -0.02 0.56 16 24 C 0.04 0.51 6.98 37.31 0.26 0.77 16 25 O -0.36 -6.00 10.14 -35.23 -0.36 -6.36 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.39 10.81 7.55 -40.82 -0.31 10.50 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 32 H 0.12 0.52 7.95 -51.93 -0.41 0.11 16 33 H 0.11 0.76 7.66 -51.93 -0.40 0.36 16 34 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.09 0.40 6.05 -51.93 -0.31 0.09 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -38.42 337.54 -6.85 -45.27 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.57 Total: 5.49 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.08 Total: 4.36 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.02 Total: -62.83 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.27 Total: -15.13 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.42 -6.85 -45.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673252429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.358 kcal (2) G-P(sol) polarization free energy of solvation -38.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds