Wall clock time and date at job start Tue Mar 31 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21603 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.47428 * 119.99925 * 180.02562 * 16 15 14 19 19 C 1.41201 * 126.44191 * 359.67747 * 18 16 15 20 20 N 1.30285 * 108.03372 * 179.82138 * 19 18 16 21 21 N 1.40518 * 109.01521 * 0.34145 * 20 19 18 22 22 C 1.34023 * 108.16996 * 359.89321 * 21 20 19 23 23 C 1.51381 * 110.34055 * 179.72357 * 22 21 20 24 24 C 1.54567 * 104.15269 * 343.55514 * 23 22 21 25 25 C 1.47255 * 140.81337 * 180.02562 * 21 20 19 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 29 29 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 30 30 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 32 32 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 33 33 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 34 34 H 1.08003 * 125.97920 * 359.95340 * 19 18 16 35 35 H 1.09002 * 110.49697 * 102.21463 * 23 22 21 36 36 H 1.09006 * 110.49798 * 224.87884 * 23 22 21 37 37 H 1.09005 * 110.98236 * 266.92966 * 24 23 22 38 38 H 1.08993 * 111.02561 * 143.12267 * 24 23 22 39 39 H 1.09004 * 110.22704 * 316.04437 * 25 21 20 40 40 H 1.08996 * 110.23042 * 77.91559 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5669 -3.2082 0.5825 12 6 4.2527 -2.9710 -1.4458 13 8 5.0661 -2.0610 -2.1890 14 6 5.5016 -2.2607 0.5983 15 7 5.3691 -1.6697 1.9322 16 6 6.4698 -1.3938 2.6594 17 8 7.5729 -1.6359 2.2085 18 6 6.3364 -0.7996 4.0020 19 6 5.1303 -0.4599 4.6529 20 7 5.4277 0.0342 5.8211 21 7 6.8247 0.0430 5.9724 22 6 7.3689 -0.4647 4.8578 23 6 8.8789 -0.4719 4.9657 24 6 9.1788 0.4928 6.1355 25 6 7.8652 0.4209 6.9434 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 4.7185 -3.9565 -1.4441 29 1 3.2668 -3.0360 -1.9059 30 1 5.1987 -2.3159 -3.1124 31 1 6.0133 -3.2201 0.6751 32 1 6.0783 -1.5913 -0.0400 33 1 4.4893 -1.4763 2.2918 34 1 4.1354 -0.5892 4.2531 35 1 9.2403 -1.4743 5.1956 36 1 9.3292 -0.1052 4.0433 37 1 9.3584 1.5043 5.7710 38 1 10.0217 0.1382 6.7285 39 1 7.6377 1.3933 7.3802 40 1 7.9430 -0.3342 7.7255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676541534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:45 Heat of formation + Delta-G solvation = 18.184651 kcal Electronic energy + Delta-G solvation = -23659.924035 eV Core-core repulsion = 20091.278888 eV Total energy + Delta-G solvation = -3568.645148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88332 -38.98709 -37.15163 -36.48956 -34.93263 -33.44232 -31.60443 -31.02023 -29.58581 -28.96131 -27.46561 -25.08472 -23.28188 -22.55436 -21.93921 -20.46057 -20.10127 -19.39244 -17.95712 -17.23654 -16.84966 -16.66171 -15.66660 -15.01502 -14.90590 -14.57669 -14.36624 -14.26135 -13.90037 -13.80114 -13.50164 -13.47617 -13.05790 -12.91422 -12.73048 -12.31205 -12.26068 -11.94537 -11.56681 -11.52372 -10.97471 -10.92640 -10.81664 -10.64626 -10.08263 -9.62586 -9.58296 -9.44140 -9.41518 -8.97125 -8.76845 -8.41985 -7.31953 -5.80657 -3.16685 1.52321 2.05575 2.23514 3.39929 3.45878 3.48517 3.64129 3.71735 3.79254 4.18160 4.33194 4.44869 4.58614 4.80299 4.85380 5.04811 5.06646 5.19914 5.26446 5.26667 5.41357 5.46439 5.49259 5.54109 5.56167 5.81768 5.89780 5.97116 5.98228 6.29876 6.42235 6.42908 6.57211 6.67972 6.92815 7.57606 7.93486 8.01269 8.14409 8.38421 8.66484 9.16930 9.89633 10.09936 11.37017 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.004536 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.422397 B = 6171.422984 C = 7303.183278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.075 0.925 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.119 3.881 15 N -0.714 5.714 16 C 0.591 3.409 17 O -0.561 6.561 18 C -0.275 4.275 19 C 0.089 3.911 20 N -0.277 5.277 21 N -0.388 5.388 22 C 0.132 3.868 23 C -0.068 4.068 24 C -0.134 4.134 25 C 0.126 3.874 26 H 0.260 0.740 27 H 0.366 0.634 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.366 0.634 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.200 0.800 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.072 -2.774 10.646 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.368 6.368 14 C -0.006 4.006 15 N -0.365 5.365 16 C 0.378 3.622 17 O -0.441 6.441 18 C -0.290 4.290 19 C -0.098 4.098 20 N -0.095 5.095 21 N -0.167 5.167 22 C -0.001 4.001 23 C -0.107 4.107 24 C -0.172 4.172 25 C 0.006 3.994 26 H 0.070 0.930 27 H 0.200 0.800 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.211 0.789 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.243 0.757 34 H 0.217 0.783 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.046 -2.102 12.242 21.908 hybrid contribution 0.071 0.683 -1.249 1.426 sum 18.117 -1.419 10.993 21.239 Atomic orbital electron populations 1.69696 1.05139 1.25936 1.57040 1.24621 0.95120 0.97155 1.01626 0.86594 0.79248 0.84962 0.77982 1.21090 1.21879 1.20108 1.19051 0.80448 0.94682 1.43772 0.89145 1.42738 1.03851 1.01857 1.89731 1.20578 0.90585 0.90580 0.92211 0.90771 1.22997 0.93846 0.90375 0.94973 1.86526 1.72533 1.52022 1.25752 1.21560 0.98159 0.98343 0.82507 1.45777 1.09187 1.63687 1.17848 1.17200 0.84292 0.77365 0.83314 1.90709 1.25968 1.55124 1.72347 1.19553 0.91530 1.19346 0.98588 1.24262 0.99328 0.95325 0.90899 1.77248 0.87274 1.24922 1.20026 1.50118 1.04543 1.47566 1.14490 1.22443 0.95244 0.93949 0.88488 1.20970 0.87922 1.01421 1.00367 1.22872 0.96164 1.01553 0.96633 1.22428 0.83528 1.02644 0.90794 0.93010 0.80032 0.95118 0.92808 0.78927 0.91744 0.90705 0.75714 0.78327 0.88082 0.87719 0.89250 0.87771 0.88726 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.25 -6.67 10.41 -15.06 -0.16 -6.82 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.74 -16.68 4.31 -53.43 -0.23 -16.91 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 12 C 0.06 0.99 6.85 37.16 0.25 1.24 16 13 O -0.56 -9.50 12.64 -35.23 -0.45 -9.95 16 14 C 0.12 2.05 5.12 -4.04 -0.02 2.03 16 15 N -0.71 -12.24 5.38 -61.38 -0.33 -12.57 16 16 C 0.59 10.45 7.81 -12.52 -0.10 10.35 16 17 O -0.56 -11.09 16.90 5.27 0.09 -11.00 16 18 C -0.28 -4.38 6.13 -105.04 -0.64 -5.02 16 19 C 0.09 1.36 11.50 -17.08 -0.20 1.16 16 20 N -0.28 -4.28 12.64 30.82 0.39 -3.89 16 21 N -0.39 -5.00 4.81 -55.13 -0.27 -5.27 16 22 C 0.13 1.80 7.31 -81.31 -0.59 1.21 16 23 C -0.07 -0.63 6.86 -26.73 -0.18 -0.81 16 24 C -0.13 -0.75 7.18 -25.18 -0.18 -0.93 16 25 C 0.13 0.95 7.78 -2.90 -0.02 0.93 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.37 8.64 5.66 -40.82 -0.23 8.41 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.37 4.37 9.12 45.56 0.42 4.78 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 33 H 0.41 6.84 7.09 -40.82 -0.29 6.56 16 34 H 0.20 2.67 7.50 -52.48 -0.39 2.27 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -36.23 338.90 -6.45 -42.68 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -4.70 Total: 15.51 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.13 Total: 6.50 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.34 Total: -66.35 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.36 Total: -20.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.23 -6.45 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676541534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.865 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds