Wall clock time and date at job start Tue Mar 31 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21603 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.47428 * 119.99925 * 180.02562 * 16 15 14 19 19 C 1.41201 * 126.44191 * 359.67747 * 18 16 15 20 20 N 1.30285 * 108.03372 * 179.82138 * 19 18 16 21 21 N 1.40518 * 109.01521 * 0.34145 * 20 19 18 22 22 C 1.34023 * 108.16996 * 359.89321 * 21 20 19 23 23 C 1.51381 * 110.34055 * 179.72357 * 22 21 20 24 24 C 1.54567 * 104.15269 * 343.55514 * 23 22 21 25 25 C 1.47255 * 140.81337 * 180.02562 * 21 20 19 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 29 29 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 30 30 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 32 32 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 33 33 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 34 34 H 1.08003 * 125.97920 * 359.95340 * 19 18 16 35 35 H 1.09002 * 110.49697 * 102.21463 * 23 22 21 36 36 H 1.09006 * 110.49798 * 224.87884 * 23 22 21 37 37 H 1.09005 * 110.98236 * 266.92966 * 24 23 22 38 38 H 1.08993 * 111.02561 * 143.12267 * 24 23 22 39 39 H 1.09004 * 110.22704 * 316.04437 * 25 21 20 40 40 H 1.08996 * 110.23042 * 77.91559 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5669 -3.2082 0.5825 12 6 4.2527 -2.9710 -1.4458 13 8 5.0661 -2.0610 -2.1890 14 6 5.5016 -2.2607 0.5983 15 7 5.3691 -1.6697 1.9322 16 6 6.4698 -1.3938 2.6594 17 8 7.5729 -1.6359 2.2085 18 6 6.3364 -0.7996 4.0020 19 6 5.1303 -0.4599 4.6529 20 7 5.4277 0.0342 5.8211 21 7 6.8247 0.0430 5.9724 22 6 7.3689 -0.4647 4.8578 23 6 8.8789 -0.4719 4.9657 24 6 9.1788 0.4928 6.1355 25 6 7.8652 0.4209 6.9434 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 4.7185 -3.9565 -1.4441 29 1 3.2668 -3.0360 -1.9059 30 1 5.1987 -2.3159 -3.1124 31 1 6.0133 -3.2201 0.6751 32 1 6.0783 -1.5913 -0.0400 33 1 4.4893 -1.4763 2.2918 34 1 4.1354 -0.5892 4.2531 35 1 9.2403 -1.4743 5.1956 36 1 9.3292 -0.1052 4.0433 37 1 9.3584 1.5043 5.7710 38 1 10.0217 0.1382 6.7285 39 1 7.6377 1.3933 7.3802 40 1 7.9430 -0.3342 7.7255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676541534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:44 Heat of formation + Delta-G solvation = -12.230697 kcal Electronic energy + Delta-G solvation = -23661.242944 eV Core-core repulsion = 20091.278888 eV Total energy + Delta-G solvation = -3569.964056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.87701 -40.35140 -38.60530 -37.31640 -36.40423 -35.15424 -33.39302 -32.12680 -30.58704 -30.45396 -28.44811 -26.36605 -25.25139 -23.48859 -22.87155 -21.70354 -21.39922 -20.62339 -19.77991 -18.46078 -18.25475 -17.48925 -17.13610 -16.55911 -16.12166 -16.05352 -15.54999 -15.43437 -15.02497 -15.00173 -14.73132 -14.61354 -14.43984 -14.20375 -14.16607 -13.96262 -13.17987 -13.04820 -12.82079 -12.60766 -12.51617 -12.32999 -12.12030 -12.02481 -11.84367 -11.77434 -11.08489 -10.87926 -10.71729 -10.37878 -10.09192 -9.61323 -9.31001 -7.99962 -5.31465 0.47028 1.05186 1.21934 1.38363 1.41465 1.46458 2.34862 2.44842 2.49183 3.05158 3.32511 3.45142 3.49856 3.64134 3.72999 3.88295 3.94445 4.02506 4.13721 4.34303 4.43205 4.48201 4.52959 4.56321 4.63552 4.70443 4.83763 4.89157 4.98360 5.01974 5.07750 5.21433 5.33616 5.54675 5.65954 5.80513 6.23916 6.49804 6.67396 7.05570 7.11115 7.30713 7.85653 8.04581 9.21068 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.004536 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.422397 B = 6171.422984 C = 7303.183278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.051 4.051 3 Si 0.941 3.059 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.260 1.260 7 C -0.219 4.219 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.165 3.835 11 H 0.082 0.918 12 C 0.066 3.934 13 O -0.583 6.583 14 C 0.130 3.870 15 N -0.715 5.715 16 C 0.591 3.409 17 O -0.587 6.587 18 C -0.311 4.311 19 C 0.084 3.916 20 N -0.306 5.306 21 N -0.384 5.384 22 C 0.131 3.869 23 C -0.071 4.071 24 C -0.115 4.115 25 C 0.111 3.889 26 H 0.256 0.744 27 H 0.363 0.637 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.388 0.612 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.407 0.593 34 H 0.205 0.795 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.008 -2.873 11.797 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.243 4.243 3 Si 0.770 3.230 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.185 1.185 7 C -0.350 4.350 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.057 3.943 11 H 0.099 0.901 12 C -0.015 4.015 13 O -0.390 6.390 14 C 0.006 3.994 15 N -0.365 5.365 16 C 0.380 3.620 17 O -0.469 6.469 18 C -0.326 4.326 19 C -0.103 4.103 20 N -0.124 5.124 21 N -0.164 5.164 22 C -0.004 4.004 23 C -0.110 4.110 24 C -0.153 4.153 25 C -0.007 4.007 26 H 0.065 0.935 27 H 0.196 0.804 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.236 0.764 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.221 0.779 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.126 0.874 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.035 -2.229 13.400 25.040 hybrid contribution -0.740 0.607 -1.565 1.835 sum 20.296 -1.622 11.835 23.550 Atomic orbital electron populations 1.69836 1.06761 1.26300 1.60071 1.25217 0.95703 1.00189 1.03172 0.85629 0.78563 0.81274 0.77509 1.21615 1.22594 1.18483 1.19037 0.82135 0.93528 1.40306 0.91233 1.42722 1.02411 1.03430 1.89785 1.20838 0.90780 0.88827 0.93895 0.90063 1.22794 0.93538 0.91996 0.93149 1.86469 1.72286 1.52654 1.27635 1.21423 0.97032 0.98762 0.82196 1.45785 1.09231 1.63715 1.17781 1.17438 0.83836 0.76853 0.83835 1.90677 1.26708 1.56455 1.73097 1.19579 0.92811 1.21627 0.98551 1.24373 0.99655 0.95311 0.90979 1.77131 0.89403 1.25682 1.20208 1.50597 1.04057 1.46377 1.15345 1.23124 0.97229 0.92151 0.87917 1.21202 0.84741 1.03317 1.01753 1.22947 0.96188 1.01121 0.95028 1.23003 0.82823 1.04081 0.90788 0.93520 0.80448 0.91207 0.94641 0.76387 0.89963 0.92348 0.75655 0.77872 0.86632 0.88314 0.88620 0.83815 0.87410 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.32 13.97 21.65 0.30 -61.02 16 2 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 3 Si 0.94 46.51 27.74 68.60 1.90 48.41 16 4 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 7 C -0.22 -11.76 10.41 84.03 0.87 -10.88 16 8 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 9 N -0.74 -32.97 4.31 -322.94 -1.39 -34.37 16 10 C 0.17 5.84 2.84 44.99 0.13 5.97 16 11 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 12 C 0.07 2.06 6.85 71.98 0.49 2.55 16 13 O -0.58 -18.47 12.64 -148.98 -1.88 -20.35 16 14 C 0.13 4.33 5.12 86.38 0.44 4.77 16 15 N -0.71 -24.14 5.38 -466.37 -2.51 -26.65 16 16 C 0.59 20.72 7.81 86.66 0.68 21.40 16 17 O -0.59 -22.88 16.90 -4.04 -0.07 -22.95 16 18 C -0.31 -9.81 6.13 -20.13 -0.12 -9.93 16 19 C 0.08 2.57 11.50 85.65 0.98 3.55 16 20 N -0.31 -9.33 12.64 -56.42 -0.71 -10.04 16 21 N -0.38 -9.30 4.81 -328.32 -1.58 -10.88 16 22 C 0.13 3.41 7.31 42.44 0.31 3.72 16 23 C -0.07 -1.13 6.86 30.60 0.21 -0.92 16 24 C -0.11 -0.82 7.18 31.60 0.23 -0.59 16 25 C 0.11 1.31 7.78 86.70 0.67 1.99 16 26 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 27 H 0.36 16.76 5.66 -92.71 -0.52 16.23 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.39 8.37 9.12 -74.05 -0.68 7.70 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.17 7.39 -2.39 -0.02 2.15 16 33 H 0.41 13.66 7.09 -92.71 -0.66 13.00 16 34 H 0.20 5.62 7.50 -2.91 -0.02 5.59 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 37 H 0.10 0.61 8.14 -2.38 -0.02 0.60 16 38 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.59 338.90 -1.40 -80.98 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.82 Total: 37.70 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 5.36 Total: 19.17 kcal Atomic # 7 Polarization: -137.06 SS G_CDS: -5.89 Total: -142.95 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.95 Total: -43.31 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -79.59 -1.40 -80.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676541534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.753 kcal (2) G-P(sol) polarization free energy of solvation -79.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds