Wall clock time and date at job start Tue Mar 31 2020 03:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.52993 * 109.47542 * 154.99721 * 10 9 7 15 15 N 1.46493 * 109.47346 * 305.00099 * 14 10 9 16 16 C 1.34781 * 120.00398 * 180.02562 * 15 14 10 17 17 O 1.21273 * 119.99559 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00160 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47148 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47110 * 180.02562 * 19 18 16 21 21 C 1.38602 * 120.79944 * 269.72311 * 20 19 18 22 22 N 1.32337 * 119.10441 * 179.71556 * 21 20 19 23 23 C 1.31792 * 120.81686 * 0.57207 * 22 21 20 24 24 N 1.31802 * 121.75525 * 359.69755 * 23 22 21 25 25 C 1.32330 * 120.81832 * 0.02562 * 24 23 22 26 26 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 29 29 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 30 30 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 31 31 H 1.09009 * 109.47018 * 64.99747 * 14 10 9 32 32 H 1.09002 * 109.47579 * 184.99417 * 14 10 9 33 33 H 0.96998 * 119.99959 * 359.97438 * 15 14 10 34 34 H 1.08997 * 109.47068 * 300.00505 * 18 16 15 35 35 H 1.09008 * 109.46877 * 59.99887 * 18 16 15 36 36 H 1.09001 * 109.47085 * 300.00255 * 19 18 16 37 37 H 1.08999 * 109.46640 * 59.99940 * 19 18 16 38 38 H 1.08001 * 120.44485 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.12400 * 179.72581 * 23 22 21 40 40 H 1.07998 * 120.44535 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4966 -2.2572 -0.6331 15 7 5.3536 -1.6583 -1.9623 16 6 6.4485 -1.3791 -2.6971 17 8 7.5520 -1.6232 -2.2575 18 6 6.3013 -0.7635 -4.0647 19 6 7.6859 -0.5497 -4.6795 20 6 7.5387 0.0665 -6.0468 21 6 7.4278 -0.7298 -7.1759 22 7 7.2943 -0.1533 -8.3595 23 6 7.2775 1.1596 -8.4730 24 7 7.3859 1.9481 -7.4225 25 6 7.5171 1.4431 -6.2064 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3622 -0.0119 28 1 3.2818 -3.0473 1.8842 29 1 4.7299 -3.9650 1.4055 30 1 5.2233 -2.3343 3.0795 31 1 6.0785 -1.5916 0.0046 32 1 6.0077 -3.2161 -0.7196 33 1 4.4709 -1.4634 -2.3140 34 1 5.7191 -1.4291 -4.7020 35 1 5.7904 0.1956 -3.9784 36 1 8.2676 0.1162 -4.0420 37 1 8.1971 -1.5085 -4.7657 38 1 7.4450 -1.8063 -7.0902 39 1 7.1716 1.6012 -9.4529 40 1 7.6059 2.0948 -5.3498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676554513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:30 Heat of formation + Delta-G solvation = -32.732116 kcal Electronic energy + Delta-G solvation = -22889.046178 eV Core-core repulsion = 19318.193113 eV Total energy + Delta-G solvation = -3570.853065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29540 -39.57830 -37.36000 -35.23344 -34.83427 -33.95928 -33.60886 -31.65337 -30.60373 -28.91052 -26.29932 -24.86525 -24.67331 -23.33878 -22.19142 -20.29176 -19.92752 -18.00845 -17.90595 -17.87563 -16.99657 -16.88740 -15.91569 -15.58396 -15.07481 -14.75086 -14.61005 -14.11828 -13.93153 -13.89749 -13.75232 -13.61032 -13.11218 -12.98349 -12.82083 -12.45609 -12.38911 -11.65859 -11.36411 -11.10706 -11.08862 -11.04702 -10.91392 -10.76043 -10.18157 -9.90028 -9.70598 -9.58518 -9.48747 -9.47086 -9.05690 -8.77052 -7.40988 -5.88506 -3.25256 0.58753 0.78946 2.78264 3.30509 3.34132 3.36815 3.40958 3.54471 3.88372 3.94741 4.31519 4.44827 4.50123 4.53126 4.76246 4.78569 5.03714 5.04797 5.16203 5.22433 5.32566 5.39760 5.42839 5.45612 5.76036 5.82495 5.84579 5.86445 5.88238 6.11223 6.16753 6.33398 6.55707 6.66181 6.73376 7.76005 7.78453 7.84800 8.05922 8.30373 8.40620 9.08169 9.80684 10.00594 11.29114 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.003624 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.598568 B = 7725.144323 C = 8953.092128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.074 0.926 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.717 5.717 16 C 0.510 3.490 17 O -0.553 6.553 18 C -0.139 4.139 19 C -0.055 4.055 20 C -0.183 4.183 21 C 0.150 3.850 22 N -0.519 5.519 23 C 0.284 3.716 24 N -0.518 5.518 25 C 0.151 3.849 26 H 0.261 0.739 27 H 0.366 0.634 28 H 0.054 0.946 29 H 0.031 0.969 30 H 0.367 0.633 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.168 0.832 39 H 0.195 0.805 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 -3.066 -9.928 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.108 0.892 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.368 5.368 16 C 0.296 3.704 17 O -0.432 6.432 18 C -0.179 4.179 19 C -0.094 4.094 20 C -0.187 4.187 21 C -0.016 4.016 22 N -0.232 5.232 23 C -0.004 4.004 24 N -0.231 5.231 25 C -0.015 4.015 26 H 0.071 0.929 27 H 0.199 0.801 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.212 0.788 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.185 0.815 39 H 0.211 0.789 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 15.039 -2.571 -11.123 18.882 hybrid contribution -0.042 0.628 1.361 1.500 sum 14.997 -1.943 -9.762 18.000 Atomic orbital electron populations 1.69701 1.05145 1.26016 1.56828 1.24650 0.95156 0.97235 1.01552 0.86557 0.79000 0.84880 0.78026 1.21008 1.20356 1.21820 1.19045 0.80413 0.94713 1.44004 0.89164 1.42725 1.03872 1.01799 1.89784 1.20568 0.90519 0.90564 0.92272 0.90816 1.22999 0.93806 0.90455 0.94974 1.86515 1.72182 1.51997 1.26205 1.21595 0.98302 0.98292 0.82738 1.46065 1.09611 1.62940 1.18216 1.20490 0.84540 0.78470 0.86900 1.90678 1.25661 1.53975 1.72861 1.21667 0.98765 1.03067 0.94366 1.20204 0.96592 1.02373 0.90250 1.21770 1.02429 0.96172 0.98358 1.23219 0.90269 1.01117 0.87002 1.68439 1.13614 1.13704 1.27468 1.24978 0.91365 0.85875 0.98165 1.68449 1.13259 1.41565 0.99864 1.23248 0.90172 0.92850 0.95259 0.92935 0.80077 0.92762 0.95099 0.78829 0.90656 0.91716 0.75452 0.88686 0.88633 0.89421 0.89417 0.81461 0.78869 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.97 55.49 0.78 -27.18 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.89 21.51 27.74 -169.99 -4.72 16.79 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.32 6.51 56.52 0.37 -5.96 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.57 10.41 -15.06 -0.16 -6.73 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 N -0.74 -16.05 4.31 -53.43 -0.23 -16.28 16 10 C 0.17 2.98 2.84 -67.93 -0.19 2.79 16 11 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 12 C 0.06 0.94 6.86 37.16 0.25 1.19 16 13 O -0.57 -9.14 12.64 -35.23 -0.45 -9.58 16 14 C 0.12 1.83 5.12 -4.05 -0.02 1.81 16 15 N -0.72 -10.65 5.39 -60.30 -0.32 -10.98 16 16 C 0.51 7.17 7.83 -10.98 -0.09 7.09 16 17 O -0.55 -9.41 15.98 5.56 0.09 -9.32 16 18 C -0.14 -1.40 5.68 -27.88 -0.16 -1.56 16 19 C -0.06 -0.50 4.68 -27.89 -0.13 -0.63 16 20 C -0.18 -1.64 5.17 -104.36 -0.54 -2.18 16 21 C 0.15 1.35 11.01 -17.20 -0.19 1.16 16 22 N -0.52 -5.39 10.44 -14.58 -0.15 -5.54 16 23 C 0.28 2.77 12.29 -92.15 -1.13 1.64 16 24 N -0.52 -5.58 10.44 -14.58 -0.15 -5.73 16 25 C 0.15 1.44 11.01 -17.20 -0.19 1.25 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.37 8.25 5.65 -40.82 -0.23 8.02 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.37 4.17 9.12 45.56 0.42 4.59 16 31 H 0.08 1.35 7.39 -51.92 -0.38 0.97 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.41 6.05 8.14 -40.82 -0.33 5.72 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.09 0.83 8.06 -51.93 -0.42 0.42 16 37 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -34.11 345.78 -7.35 -41.45 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -4.76 Total: 15.11 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.64 Total: 6.04 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.08 Total: -65.71 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.36 Total: -18.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.11 -7.35 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676554513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.721 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds