Wall clock time and date at job start Tue Mar 31 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32213 * 120.51067 * 2 1 4 4 C 1.31907 * 121.14460 * 180.31262 * 3 2 1 5 5 N 1.31759 * 122.19153 * 359.70346 * 4 3 2 6 6 C 1.32745 * 120.87173 * 0.02562 * 5 4 3 7 7 O 1.35276 * 120.61406 * 180.02562 * 6 5 4 8 8 C 1.39759 * 120.50677 * 179.74226 * 2 1 3 9 9 C 1.47536 * 120.98197 * 359.97400 * 8 2 1 10 10 O 1.21592 * 120.00173 * 269.72148 * 9 8 2 11 11 N 1.34777 * 120.00030 * 89.72430 * 9 8 2 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.46847 * 304.99833 * 13 12 11 15 15 C 1.53000 * 109.47013 * 64.99796 * 13 12 11 16 16 C 1.52999 * 109.46954 * 184.99888 * 13 12 11 17 17 N 1.46506 * 109.46763 * 174.99983 * 16 13 12 18 18 C 1.36940 * 119.99834 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99718 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99811 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00367 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47357 * 90.00348 * 22 20 18 24 24 H 1.48509 * 109.46798 * 210.00217 * 22 20 18 25 25 H 1.48492 * 109.47095 * 329.99685 * 22 20 18 26 26 H 1.08999 * 109.46636 * 270.26208 * 1 2 3 27 27 H 1.09001 * 109.47180 * 30.25568 * 1 2 3 28 28 H 1.08991 * 109.47027 * 150.26220 * 1 2 3 29 29 H 1.08000 * 118.90643 * 179.72593 * 4 3 2 30 30 H 0.96697 * 113.99759 * 269.97539 * 7 6 5 31 31 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 33 33 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 34 34 H 1.08988 * 109.47502 * 60.00190 * 15 13 12 35 35 H 1.09001 * 109.46690 * 180.02562 * 15 13 12 36 36 H 1.09007 * 109.47116 * 299.99803 * 15 13 12 37 37 H 1.08992 * 109.47021 * 294.99453 * 16 13 12 38 38 H 1.08998 * 109.47006 * 55.00068 * 16 13 12 39 39 H 0.96996 * 119.99866 * 359.97438 * 17 16 13 40 40 H 0.96998 * 120.00459 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 -0.0062 5 7 4.2116 0.0465 -0.0068 6 6 3.6234 -1.1436 -0.0017 7 8 4.3618 -2.2770 -0.0019 8 6 2.2166 -1.2041 0.0054 9 6 1.5123 -2.5005 0.0118 10 8 1.2270 -3.0322 1.0675 11 7 1.1853 -3.0955 -1.1524 12 6 0.4854 -4.3826 -1.1460 13 6 0.2349 -4.8340 -2.5863 14 1 -0.2997 -4.0513 -3.1246 15 6 1.5735 -5.1045 -3.2762 16 6 -0.6039 -6.1136 -2.5811 17 7 -0.9446 -6.4797 -3.9581 18 6 -1.6955 -7.5984 -4.2033 19 1 -2.0361 -8.2108 -3.3816 20 6 -2.0187 -7.9450 -5.5080 21 7 -1.6031 -7.1988 -6.5094 22 14 -3.0436 -9.4705 -5.8424 23 1 -4.4838 -9.1085 -5.8452 24 1 -2.6728 -10.0359 -7.1646 25 1 -2.7889 -10.4799 -4.7835 26 1 -0.3632 0.0047 1.0277 27 1 -0.3633 0.8877 -0.5178 28 1 -0.3633 -0.8923 -0.5097 29 1 4.0088 2.1048 -0.0105 30 1 4.5727 -2.6088 -0.8853 31 1 1.4126 -2.6712 -1.9946 32 1 1.0961 -5.1257 -0.6330 33 1 -0.4677 -4.2754 -0.6282 34 1 2.1080 -5.8871 -2.7380 35 1 1.3949 -5.4256 -4.3024 36 1 2.1711 -4.1928 -3.2799 37 1 -0.0331 -6.9203 -2.1213 38 1 -1.5188 -5.9460 -2.0127 39 1 -0.6383 -5.9298 -4.6961 40 1 -1.8286 -7.4412 -7.4212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698759816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:51 Heat of formation + Delta-G solvation = -23.654080 kcal Electronic energy + Delta-G solvation = -23084.995628 eV Core-core repulsion = 19514.536217 eV Total energy + Delta-G solvation = -3570.459411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81736 -39.62839 -38.20125 -36.94086 -34.67986 -34.45115 -32.79124 -32.11934 -30.11174 -29.14919 -26.85831 -25.84148 -24.79291 -23.28936 -22.55473 -21.06052 -20.11287 -19.36129 -18.51733 -18.07331 -16.98461 -16.85173 -16.25711 -15.61639 -15.24346 -14.82656 -14.64797 -14.26399 -14.18517 -13.80186 -13.68035 -13.29189 -13.11683 -13.08130 -12.69727 -12.50364 -12.39831 -12.14281 -11.70355 -11.13942 -10.97571 -10.81788 -10.79994 -10.66279 -10.53252 -10.25741 -10.03683 -9.93770 -9.80161 -9.72281 -9.25139 -8.92154 -6.97360 -5.81473 -3.10138 0.13225 0.42493 2.19514 2.74829 2.89844 3.11554 3.41110 3.46654 3.47996 3.49734 3.76734 4.29218 4.47347 4.54997 4.68028 4.83263 4.94793 5.10296 5.11399 5.21021 5.27077 5.45640 5.53279 5.69720 5.74743 5.85215 5.85973 5.99802 6.12406 6.26071 6.33120 6.34117 6.56836 6.69280 6.78669 6.84169 7.20135 7.50903 7.66587 7.88591 8.37599 9.49060 10.05521 10.40126 11.41476 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030412 B = 0.002709 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.474776 B =10331.805947 C =10467.690644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.229 3.771 3 N -0.525 5.525 4 C 0.336 3.664 5 N -0.542 5.542 6 C 0.400 3.600 7 O -0.466 6.466 8 C -0.251 4.251 9 C 0.575 3.425 10 O -0.519 6.519 11 N -0.715 5.715 12 C 0.125 3.875 13 C -0.111 4.111 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.207 0.793 30 H 0.413 0.587 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 17.146 10.684 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 N -0.242 5.242 4 C 0.049 3.951 5 N -0.267 5.267 6 C 0.212 3.788 7 O -0.275 6.275 8 C -0.260 4.260 9 C 0.358 3.642 10 O -0.394 6.394 11 N -0.367 5.367 12 C 0.002 3.998 13 C -0.130 4.130 14 H 0.096 0.904 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.224 0.776 30 H 0.274 0.726 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.054 17.388 12.062 23.428 hybrid contribution -0.493 -1.316 -1.349 1.948 sum 9.561 16.072 10.713 21.552 Atomic orbital electron populations 1.20951 0.86741 1.04848 1.04764 1.21854 0.97848 0.85936 0.86070 1.68317 1.10204 1.29335 1.16296 1.25015 0.86244 0.96153 0.87707 1.68078 1.42600 0.98670 1.17354 1.19385 0.85498 0.86005 0.87950 1.84696 1.72527 1.35829 1.34410 1.21770 0.95137 0.96923 1.12206 1.17527 0.78830 0.83386 0.84493 1.90852 1.53323 1.64321 1.30897 1.46094 1.59418 1.23283 1.07865 1.21529 0.97031 0.83332 0.97933 1.21567 0.97835 0.99930 0.93649 0.90440 1.21796 0.95622 1.00195 1.02292 1.20570 0.95088 0.92071 0.89024 1.42333 1.63636 1.30384 1.01200 1.19231 1.24527 1.01296 0.92021 0.91131 1.24734 1.01412 0.99241 0.95575 1.69649 1.50508 1.39806 0.98360 0.86180 0.80033 0.82660 0.77271 1.21698 1.21767 1.20730 0.88571 0.88778 0.89693 0.77646 0.72606 0.76466 0.90884 0.90923 0.92655 0.91034 0.94137 0.95927 0.96063 0.78220 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.85 36.01 0.35 -0.54 16 2 C 0.23 2.22 6.86 -81.86 -0.56 1.66 16 3 N -0.53 -4.93 10.36 -10.52 -0.11 -5.04 16 4 C 0.34 2.79 12.27 -92.09 -1.13 1.66 16 5 N -0.54 -5.48 10.45 -14.32 -0.15 -5.63 16 6 C 0.40 4.22 7.85 -16.18 -0.13 4.10 16 7 O -0.47 -4.51 13.10 -17.52 -0.23 -4.74 16 8 C -0.25 -2.69 5.67 -104.57 -0.59 -3.28 16 9 C 0.57 6.99 5.51 -12.47 -0.07 6.92 16 10 O -0.52 -8.45 17.11 5.28 0.09 -8.36 16 11 N -0.72 -7.32 5.28 -61.34 -0.32 -7.65 16 12 C 0.12 1.53 5.06 -4.04 -0.02 1.51 16 13 C -0.11 -1.54 2.46 -90.62 -0.22 -1.76 16 14 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 15 C -0.14 -1.88 8.94 37.16 0.33 -1.55 16 16 C 0.16 3.01 5.65 -4.04 -0.02 2.99 16 17 N -0.73 -17.65 5.33 -59.91 -0.32 -17.97 16 18 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 29 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.41 1.91 9.06 45.56 0.41 2.32 16 31 H 0.40 3.26 7.64 -40.82 -0.31 2.95 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.74 8.14 -51.94 -0.42 0.32 16 35 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 36 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.64 6.85 -40.82 -0.28 9.36 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -34.94 345.60 -7.09 -42.03 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.65 Total: 7.47 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.31 Total: 4.51 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.18 Total: -63.17 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.14 Total: -13.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.94 -7.09 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698759816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.371 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds