Wall clock time and date at job start Tue Mar 31 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31881 * 118.95256 * 2 1 4 4 C 1.32138 * 120.96597 * 179.68128 * 3 2 1 5 5 C 1.39967 * 118.91930 * 0.61523 * 4 3 2 6 6 C 1.47835 * 120.93738 * 179.69397 * 5 4 3 7 7 O 1.21553 * 120.00130 * 173.88429 * 6 5 4 8 8 N 1.34776 * 119.99854 * 353.88925 * 6 5 4 9 9 C 1.46505 * 119.99896 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47402 * 179.97438 * 9 8 6 11 11 H 1.09010 * 109.46581 * 59.99578 * 10 9 8 12 12 O 1.42905 * 109.47008 * 300.00240 * 10 9 8 13 13 C 1.52992 * 109.47365 * 179.97438 * 10 9 8 14 14 N 1.46499 * 109.47260 * 185.00193 * 13 10 9 15 15 C 1.36941 * 120.00216 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99914 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00209 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47070 * 59.99613 * 19 17 15 21 21 H 1.48504 * 109.47422 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47135 * 300.00048 * 19 17 15 23 23 C 1.39927 * 118.12292 * 359.42746 * 5 4 3 24 24 C 1.50701 * 120.53634 * 180.24908 * 23 5 4 25 25 N 1.31856 * 118.95347 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46931 * 269.97294 * 1 2 3 27 27 H 1.09002 * 109.47188 * 29.96939 * 1 2 3 28 28 H 1.09004 * 109.47382 * 149.97644 * 1 2 3 29 29 H 1.08000 * 120.53935 * 180.31520 * 4 3 2 30 30 H 0.96997 * 120.00104 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.47282 * 59.99366 * 9 8 6 32 32 H 1.08999 * 109.46750 * 299.99643 * 9 8 6 33 33 H 0.96700 * 113.99785 * 299.99427 * 12 10 9 34 34 H 1.08991 * 109.47710 * 305.00487 * 13 10 9 35 35 H 1.09004 * 109.46987 * 65.00572 * 13 10 9 36 36 H 0.97005 * 119.99940 * 359.97438 * 14 13 10 37 37 H 0.97000 * 120.00156 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47209 * 83.73333 * 24 23 5 39 39 H 1.08999 * 109.47249 * 203.73417 * 24 23 5 40 40 H 1.08998 * 109.47283 * 323.73270 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0063 5 6 4.1854 -0.0001 -0.0001 6 6 5.6638 -0.0002 -0.0003 7 8 6.2715 -1.0475 0.1063 8 7 6.3377 1.1610 -0.1184 9 6 7.8027 1.1610 -0.1180 10 6 8.3128 2.5960 -0.2648 11 1 7.9491 3.1978 0.5682 12 8 7.8368 3.1473 -1.4942 13 6 9.8427 2.5960 -0.2637 14 7 10.3311 3.9771 -0.2839 15 6 11.6774 4.2274 -0.2872 16 1 12.3792 3.4066 -0.2745 17 6 12.1400 5.5360 -0.3058 18 7 11.2847 6.5362 -0.3208 19 14 13.9765 5.8773 -0.3095 20 1 14.5919 5.2620 -1.5129 21 1 14.2074 7.3442 -0.3312 22 1 14.5904 5.2971 0.9118 23 6 3.4660 -1.2003 -0.0007 24 6 4.1856 -2.5244 -0.0018 25 7 2.1453 -1.1538 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8903 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 3.9816 2.1493 0.0114 30 1 5.8527 1.9967 -0.2037 31 1 8.1663 0.5595 -0.9511 32 1 8.1657 0.7401 0.8197 33 1 8.1224 2.6612 -2.2799 34 1 10.2055 2.0955 0.6340 35 1 10.2067 2.0691 -1.1457 36 1 9.7007 4.7143 -0.2957 37 1 11.6080 7.4507 -0.3334 38 1 4.4580 -2.7908 1.0194 39 1 3.5324 -3.2926 -0.4157 40 1 5.0868 -2.4476 -0.6100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753930886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:52 Heat of formation + Delta-G solvation = -57.323119 kcal Electronic energy + Delta-G solvation = -22682.068071 eV Core-core repulsion = 19110.148660 eV Total energy + Delta-G solvation = -3571.919410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48459 -40.61983 -38.93971 -36.20853 -35.80936 -35.18124 -34.53243 -33.19382 -30.99053 -30.18804 -29.37859 -26.97142 -25.13818 -24.51535 -23.36415 -22.75255 -21.81485 -19.36728 -19.06604 -18.95571 -17.53551 -17.27232 -16.97477 -16.69023 -16.50393 -16.39971 -15.70054 -15.53752 -15.14734 -14.81522 -14.66320 -14.34287 -14.11635 -14.08352 -13.80851 -13.38311 -13.34048 -13.22855 -13.13299 -12.95701 -12.74055 -12.71375 -12.20277 -11.97330 -11.79992 -11.70873 -11.11515 -10.96097 -10.79528 -10.64973 -10.45526 -10.14358 -9.00626 -7.94657 -5.23975 -0.71981 -0.13033 1.48144 1.50934 1.57118 1.66079 1.89734 2.56340 2.58499 2.78308 2.89216 3.23859 3.36406 3.45018 3.57243 3.58158 3.76836 4.03033 4.06010 4.22040 4.34145 4.42083 4.62792 4.63488 4.66308 4.69507 4.73240 4.80309 4.89527 4.95673 5.10340 5.22596 5.28401 5.36264 5.48653 5.76970 6.26542 6.34336 6.80175 6.87722 7.01713 7.33826 8.09615 8.31923 9.28343 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.002496 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.787620 B =11213.049695 C =11866.345220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.331 3.669 3 N -0.540 5.540 4 C 0.196 3.804 5 C -0.265 4.265 6 C 0.571 3.429 7 O -0.554 6.554 8 N -0.704 5.704 9 C 0.103 3.897 10 C 0.106 3.894 11 H 0.102 0.898 12 O -0.563 6.563 13 C 0.122 3.878 14 N -0.741 5.741 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.228 3.772 24 C -0.106 4.106 25 N -0.539 5.539 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.197 0.803 30 H 0.413 0.587 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.386 0.614 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.819 -15.834 0.151 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.255 5.255 4 C 0.029 3.971 5 C -0.273 4.273 6 C 0.358 3.642 7 O -0.434 6.434 8 N -0.356 5.356 9 C -0.021 4.021 10 C 0.047 3.953 11 H 0.120 0.880 12 O -0.370 6.370 13 C -0.005 4.005 14 N -0.384 5.384 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.203 1.203 23 C 0.081 3.919 24 C -0.163 4.163 25 N -0.255 5.255 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.214 0.786 30 H 0.250 0.750 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.474 -16.194 0.618 26.903 hybrid contribution 1.950 0.806 -0.318 2.134 sum -19.524 -15.388 0.300 24.861 Atomic orbital electron populations 1.20802 0.82794 1.05527 1.05372 1.24288 1.00098 0.83020 0.85996 1.68424 1.09942 1.30325 1.16791 1.23920 0.89674 0.98323 0.85170 1.21502 0.95377 0.96917 1.13466 1.17798 0.86165 0.83843 0.76397 1.90741 1.70040 1.31625 1.51015 1.45664 1.07382 1.09209 1.73339 1.21924 0.79348 0.96998 1.03827 1.22117 0.92464 0.92719 0.88046 0.88041 1.86563 1.76127 1.58272 1.16026 1.21415 0.93082 0.86804 0.99239 1.42426 1.03872 1.02704 1.89378 1.19605 0.84853 0.92032 1.41538 0.90535 1.25592 1.02002 0.95604 1.03629 1.69819 1.34539 0.98283 1.59203 0.85206 0.80057 0.76228 0.78220 1.20361 1.22246 1.20332 1.22278 0.89157 0.96341 0.84081 1.21046 1.00178 0.90315 1.04733 1.68352 1.09083 1.30638 1.17381 0.87746 0.88204 0.88310 0.78623 0.74996 0.90174 0.89941 0.76541 0.94717 0.95016 0.79130 0.93994 0.88902 0.89423 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.31 71.23 0.73 -0.19 16 2 C 0.33 6.23 7.64 138.70 1.06 7.29 16 3 N -0.54 -10.67 10.32 -186.80 -1.93 -12.59 16 4 C 0.20 3.53 10.80 85.07 0.92 4.45 16 5 C -0.26 -5.45 5.91 -19.91 -0.12 -5.57 16 6 C 0.57 12.77 7.73 86.78 0.67 13.44 16 7 O -0.55 -15.10 13.53 -3.88 -0.05 -15.15 16 8 N -0.70 -13.69 5.40 -465.98 -2.52 -16.21 16 9 C 0.10 2.25 5.34 86.38 0.46 2.72 16 10 C 0.11 2.88 3.08 30.59 0.09 2.97 16 11 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 12 O -0.56 -15.67 13.03 -148.98 -1.94 -17.61 16 13 C 0.12 4.36 5.90 86.38 0.51 4.87 16 14 N -0.74 -36.37 5.55 -343.47 -1.91 -38.28 16 15 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 16 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 18 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 19 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.23 4.88 6.86 42.92 0.29 5.17 16 24 C -0.11 -1.98 9.00 71.24 0.64 -1.34 16 25 N -0.54 -11.32 10.25 -175.04 -1.80 -13.12 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.20 2.37 6.58 -2.91 -0.02 2.35 16 30 H 0.41 6.66 6.52 -92.71 -0.60 6.05 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.39 8.64 9.05 -74.06 -0.67 7.97 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.38 20.05 7.67 -92.70 -0.71 19.34 16 37 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 40 H 0.10 2.05 5.95 -2.39 -0.01 2.03 16 Total: -1.00 -71.59 343.39 -2.14 -73.74 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.89 Total: 33.17 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.57 Total: 17.16 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -7.86 Total: -138.97 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.99 Total: -32.76 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.59 -2.14 -73.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753930886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.412 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds