Wall clock time and date at job start Tue Mar 31 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35652 * 116.99944 * 2 1 4 4 C 1.38718 * 120.15120 * 0.25079 * 3 2 1 5 5 C 1.38056 * 120.08065 * 180.27637 * 4 3 2 6 6 C 1.38542 * 120.39418 * 359.75187 * 5 4 3 7 7 C 1.37786 * 120.29984 * 359.97120 * 6 5 4 8 8 C 1.39710 * 119.91086 * 0.02562 * 7 6 5 9 9 C 1.47534 * 120.19552 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00137 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99839 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99921 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47283 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47269 * 305.00317 * 13 12 11 15 15 O 1.42903 * 109.46459 * 65.00211 * 13 12 11 16 16 C 1.53001 * 109.47376 * 185.00021 * 13 12 11 17 17 N 1.46497 * 109.46900 * 180.02562 * 16 13 12 18 18 C 1.36940 * 119.99699 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00041 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99798 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47427 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47212 * 120.00446 * 22 20 18 25 25 H 1.48501 * 109.46932 * 239.99751 * 22 20 18 26 26 H 1.09001 * 109.46990 * 59.99943 * 1 2 3 27 27 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46718 * 299.99823 * 1 2 3 29 29 H 1.07992 * 119.95791 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.79870 * 179.76591 * 5 4 3 31 31 H 1.08003 * 119.84823 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.04728 * 180.02562 * 7 6 5 33 33 H 0.96999 * 119.99691 * 359.97438 * 11 9 8 34 34 H 1.09005 * 109.47040 * 60.00167 * 12 11 9 35 35 H 1.08999 * 109.47079 * 299.99869 * 12 11 9 36 36 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 37 37 H 1.08999 * 109.47164 * 300.00361 * 16 13 12 38 38 H 1.08997 * 109.47124 * 60.00063 * 16 13 12 39 39 H 0.96996 * 120.00310 * 359.97438 * 17 16 13 40 40 H 0.97001 * 119.99921 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 0.0053 5 6 1.9207 3.6034 -0.0005 6 6 3.3038 3.6837 -0.0064 7 6 4.0668 2.5364 -0.0059 8 6 3.4442 1.2857 -0.0001 9 6 4.2551 0.0532 -0.0001 10 8 3.7095 -1.0334 0.0045 11 7 5.6005 0.1317 -0.0053 12 6 6.4057 -1.0921 -0.0048 13 6 7.8911 -0.7254 -0.0120 14 1 8.0992 -0.0686 -0.8566 15 8 8.2219 -0.0547 1.2058 16 6 8.7303 -1.9986 -0.1372 17 7 10.1525 -1.6474 -0.1434 18 6 11.1000 -2.6305 -0.2480 19 1 10.7988 -3.6647 -0.3263 20 6 12.4476 -2.2977 -0.2545 21 7 12.8147 -1.0373 -0.1606 22 14 13.7401 -3.6388 -0.3979 23 1 13.0724 -4.9619 -0.4910 24 1 14.5574 -3.4103 -1.6166 25 1 14.6181 -3.6100 0.7994 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2139 2.3196 0.0098 30 1 1.3304 4.5077 -0.0002 31 1 3.7861 4.6501 -0.0113 32 1 5.1446 2.6038 -0.0101 33 1 6.0357 0.9986 -0.0094 34 1 6.1729 -1.6806 -0.8923 35 1 6.1795 -1.6755 0.8877 36 1 8.0619 -0.5812 2.0009 37 1 8.5222 -2.6554 0.7075 38 1 8.4779 -2.5102 -1.0659 39 1 10.4230 -0.7185 -0.0742 40 1 13.7564 -0.8047 -0.1655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753935287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:47 Heat of formation + Delta-G solvation = -82.368895 kcal Electronic energy + Delta-G solvation = -22759.093393 eV Core-core repulsion = 19153.795165 eV Total energy + Delta-G solvation = -3605.298228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77124 -39.16577 -37.66295 -37.39589 -34.33673 -33.95208 -31.87747 -31.17546 -30.43742 -28.99238 -27.56352 -25.57831 -23.88802 -22.64883 -22.13754 -21.37713 -20.41360 -18.77271 -17.47402 -17.11560 -16.69451 -16.13242 -16.05865 -15.82510 -15.37121 -15.02131 -14.81007 -14.56110 -14.44276 -13.82821 -13.70655 -13.39401 -13.03836 -12.92232 -12.53672 -12.51572 -12.27970 -11.94124 -11.80708 -11.49668 -11.44198 -10.94656 -10.82842 -10.58470 -10.13094 -9.93740 -9.78145 -9.45049 -9.41249 -9.01104 -8.89494 -8.53101 -6.92662 -5.75375 -3.04877 0.59063 1.06726 2.80180 2.97055 3.14678 3.44169 3.49775 3.52108 3.63829 4.37850 4.41254 4.55566 4.67600 4.73455 4.75873 4.83838 4.89525 4.96506 5.01751 5.17489 5.21953 5.29856 5.45591 5.57115 5.64680 5.78202 5.87275 5.93168 5.99675 6.09125 6.21934 6.33737 6.46733 6.53729 6.70127 7.06661 7.55071 7.70087 7.97303 8.29037 8.42987 9.54697 10.11522 10.47536 11.47099 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.002549 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.248376 B =10981.920630 C =11655.766503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.183 3.817 4 C -0.223 4.223 5 C -0.055 4.055 6 C -0.167 4.167 7 C -0.046 4.046 8 C -0.171 4.171 9 C 0.556 3.444 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.092 3.908 13 C 0.089 3.911 14 H 0.104 0.896 15 O -0.553 6.553 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.402 0.598 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.374 0.626 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.197 10.201 0.815 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.191 6.191 3 C 0.135 3.865 4 C -0.242 4.242 5 C -0.073 4.073 6 C -0.185 4.185 7 C -0.064 4.064 8 C -0.175 4.175 9 C 0.344 3.656 10 O -0.401 6.401 11 N -0.373 5.373 12 C -0.032 4.032 13 C 0.029 3.971 14 H 0.122 0.878 15 O -0.358 6.358 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.224 0.776 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.258 9.487 0.387 27.922 hybrid contribution 0.645 -0.261 0.268 0.746 sum -25.613 9.226 0.655 27.232 Atomic orbital electron populations 1.23166 0.78790 1.04363 1.01097 1.86394 1.20699 1.25412 1.86580 1.19073 0.91002 0.84915 0.91534 1.21248 1.00315 0.92088 1.10516 1.21129 0.94782 0.97058 0.94351 1.21020 0.93809 0.98629 1.05086 1.21263 1.00212 0.90782 0.94187 1.19410 0.90851 0.94210 1.12982 1.17978 0.81999 0.88616 0.77056 1.90818 1.71671 1.28662 1.48905 1.45827 1.05633 1.10273 1.75611 1.22094 0.91126 0.86805 1.03204 1.22391 0.90271 0.96088 0.88344 0.87822 1.86564 1.89015 1.44704 1.15471 1.21194 0.86701 0.93441 0.98887 1.42242 0.98541 1.07610 1.88707 1.19271 0.86690 0.88878 1.42478 0.91157 1.24764 0.97078 0.96239 1.02874 1.69689 1.15526 1.15351 1.57276 0.86108 0.81888 0.80893 0.77238 1.20547 1.21841 1.21829 0.92631 0.87936 0.92627 0.84868 0.85339 0.85102 0.84671 0.76249 0.90409 0.91019 0.77895 0.95896 0.95336 0.77647 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.28 -3.52 8.57 -40.53 -0.35 -3.86 16 3 C 0.18 2.13 6.70 -38.69 -0.26 1.87 16 4 C -0.22 -1.88 9.03 -39.47 -0.36 -2.24 16 5 C -0.05 -0.40 10.03 -39.54 -0.40 -0.79 16 6 C -0.17 -1.29 10.02 -39.63 -0.40 -1.68 16 7 C -0.05 -0.43 9.54 -39.20 -0.37 -0.80 16 8 C -0.17 -2.08 5.89 -104.84 -0.62 -2.70 16 9 C 0.56 8.14 7.76 -12.47 -0.10 8.04 16 10 O -0.52 -9.51 15.16 -16.59 -0.25 -9.76 16 11 N -0.72 -9.24 5.45 -61.35 -0.33 -9.58 16 12 C 0.09 1.28 5.31 -4.04 -0.02 1.25 16 13 C 0.09 1.39 3.09 -26.73 -0.08 1.31 16 14 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 15 O -0.55 -8.88 13.03 -35.23 -0.46 -9.34 16 16 C 0.13 2.48 5.92 -4.04 -0.02 2.46 16 17 N -0.73 -18.52 5.49 -59.91 -0.33 -18.85 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 30 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.14 1.02 6.40 -52.49 -0.34 0.69 16 33 H 0.40 4.39 6.50 -40.82 -0.27 4.13 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.37 5.09 9.05 45.56 0.41 5.50 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.39 10.60 7.54 -40.82 -0.31 10.29 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -35.98 342.45 -7.29 -43.27 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.55 Total: 12.80 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.88 Total: 0.38 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.06 Total: -56.21 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.06 Total: -22.96 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.98 -7.29 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753935287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.100 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds