Wall clock time and date at job start Tue Mar 31 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35709 * 116.99378 * 2 1 4 4 C 1.38994 * 119.91015 * 179.97438 * 3 2 1 5 5 C 1.37709 * 120.09410 * 180.02562 * 4 3 2 6 6 C 1.39736 * 119.90511 * 359.97438 * 5 4 3 7 7 C 1.47605 * 120.08420 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99911 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99548 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99925 * 11 10 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47658 * 184.99947 * 14 11 10 16 16 C 1.36939 * 120.00451 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00259 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99649 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46951 * 90.00072 * 20 18 16 22 22 H 1.48502 * 109.46981 * 210.00020 * 20 18 16 23 23 H 1.48495 * 109.46993 * 329.99989 * 20 18 16 24 24 C 1.39732 * 119.82435 * 0.28117 * 6 5 4 25 25 C 1.37706 * 119.91181 * 359.46060 * 24 6 5 26 26 H 1.09002 * 109.46726 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46836 * 299.99689 * 1 2 3 28 28 H 1.08993 * 109.46823 * 60.00189 * 1 2 3 29 29 H 1.08003 * 119.95669 * 0.02651 * 4 3 2 30 30 H 1.07997 * 120.04768 * 179.97438 * 5 4 3 31 31 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 34 34 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 35 35 H 1.09001 * 109.47563 * 305.00337 * 14 11 10 36 36 H 1.09004 * 109.47313 * 64.99993 * 14 11 10 37 37 H 0.97002 * 119.99938 * 0.02562 * 15 14 11 38 38 H 0.96998 * 119.99824 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.04186 * 179.72514 * 24 6 5 40 40 H 1.07995 * 119.95184 * 180.25662 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4332 1.2800 0.0005 5 6 4.0622 2.5050 0.0011 6 6 3.3028 3.6780 0.0005 7 6 3.9729 4.9932 0.0005 8 8 5.1871 5.0569 0.0005 9 7 3.2388 6.1234 0.0005 10 6 3.9039 7.4288 0.0000 11 6 2.8501 8.5381 -0.0006 12 1 2.2273 8.4480 0.8894 13 8 2.0336 8.4190 -1.1673 14 6 3.5446 9.9013 -0.0005 15 7 2.5403 10.9611 0.1194 16 6 2.9292 12.2739 0.1406 17 1 3.9765 12.5280 0.0685 18 6 1.9775 13.2780 0.2536 19 7 0.7013 12.9683 0.3409 20 14 2.5082 15.0689 0.2819 21 1 2.5402 15.5975 -1.1054 22 1 1.5443 15.8581 1.0902 23 1 3.8617 15.1746 0.8833 24 6 1.9076 3.6027 0.0054 25 6 1.2862 2.3737 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0194 0.3729 0.0005 30 1 5.1408 2.5591 0.0019 31 1 2.2702 6.0727 0.0002 32 1 4.5269 7.5195 0.8897 33 1 4.5264 7.5191 -0.8903 34 1 2.5227 8.4897 -1.9985 35 1 4.2345 9.9577 0.8415 36 1 4.0968 10.0278 -0.9317 37 1 1.5997 10.7329 0.1837 38 1 0.0363 13.6700 0.4203 39 1 1.3172 4.5071 0.0095 40 1 0.2079 2.3148 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753935973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:52 Heat of formation + Delta-G solvation = -86.627013 kcal Electronic energy + Delta-G solvation = -22357.375834 eV Core-core repulsion = 18751.892961 eV Total energy + Delta-G solvation = -3605.482874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73726 -39.67030 -37.83445 -37.15820 -34.47099 -34.03011 -31.72102 -31.28049 -30.76937 -29.02968 -27.78043 -25.48850 -23.66636 -22.96716 -22.22155 -21.44785 -20.42105 -18.80589 -17.87001 -17.17136 -16.84200 -16.22008 -16.12807 -15.96424 -15.46520 -15.04121 -14.74573 -14.47188 -14.20932 -14.10551 -13.68936 -13.57131 -13.10095 -13.03516 -12.87740 -12.63603 -12.34128 -12.30947 -11.88370 -11.46645 -11.24779 -10.97930 -10.82946 -10.64143 -10.20445 -10.12043 -9.82453 -9.52431 -9.45465 -9.16281 -8.91983 -8.60321 -6.95714 -5.77830 -3.07532 0.61129 0.96422 2.69109 2.78291 3.07932 3.42870 3.47926 3.49690 3.59896 4.29700 4.44925 4.52303 4.58517 4.63367 4.69920 4.71366 4.86199 4.89524 5.01080 5.05244 5.22799 5.25110 5.54347 5.57086 5.60964 5.71551 5.80165 5.88274 5.93507 6.05372 6.17361 6.26102 6.38287 6.49935 6.65484 6.89260 7.44315 7.67198 7.90469 8.14828 8.40346 9.52016 10.08297 10.43951 11.44571 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.002346 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.702568 B =11930.499413 C =12645.351565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.151 3.849 4 C -0.162 4.162 5 C -0.020 4.020 6 C -0.172 4.172 7 C 0.559 3.441 8 O -0.544 6.544 9 N -0.717 5.717 10 C 0.090 3.910 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.127 3.873 15 N -0.726 5.726 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.042 4.042 25 C -0.217 4.217 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.404 0.596 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.374 0.626 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -26.799 -1.168 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.104 3.896 4 C -0.180 4.180 5 C -0.039 4.039 6 C -0.175 4.175 7 C 0.347 3.653 8 O -0.423 6.423 9 N -0.369 5.369 10 C -0.035 4.035 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.002 4.002 15 N -0.371 5.371 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.061 4.061 25 C -0.235 4.235 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.240 0.760 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.221 0.779 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.627 -26.829 -0.711 26.845 hybrid contribution -0.393 1.190 -0.335 1.297 sum 0.234 -25.639 -1.045 25.661 Atomic orbital electron populations 1.23141 0.77873 1.04279 1.01775 1.86048 1.21855 1.26904 1.87936 1.19320 0.92453 0.84238 0.93545 1.20415 0.91239 0.98761 1.07626 1.21096 1.00779 0.89904 0.92095 1.19880 0.93618 0.93729 1.10310 1.18149 0.86867 0.83949 0.76359 1.90776 1.13526 1.87578 1.50404 1.45827 1.10654 1.05533 1.74893 1.22124 0.96093 0.81890 1.03361 1.22407 0.91952 0.93171 0.89606 0.87719 1.86568 1.38071 1.95447 1.15749 1.21199 0.92845 0.87277 0.98836 1.42239 1.04996 1.01163 1.88688 1.19222 0.92654 0.82843 1.42740 0.91178 1.24766 0.95287 0.98063 1.02790 1.69675 0.99437 1.31823 1.56937 0.86171 0.77383 0.85037 0.77470 1.21676 1.21730 1.20731 1.21163 0.93373 0.97699 0.93850 1.21191 1.00459 0.91980 1.09897 0.87994 0.92272 0.92258 0.84464 0.83853 0.76028 0.90253 0.90906 0.77927 0.95305 0.95860 0.77743 0.93469 0.84990 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.49 -18.83 -0.20 -2.77 16 3 C 0.15 1.34 6.70 -39.02 -0.26 1.08 16 4 C -0.16 -1.46 9.97 -39.49 -0.39 -1.85 16 5 C -0.02 -0.20 9.59 -39.22 -0.38 -0.58 16 6 C -0.17 -1.90 5.88 -104.96 -0.62 -2.52 16 7 C 0.56 7.46 7.76 -12.44 -0.10 7.37 16 8 O -0.54 -9.06 16.34 5.29 0.09 -8.97 16 9 N -0.72 -8.60 5.40 -61.32 -0.33 -8.93 16 10 C 0.09 1.18 5.34 -4.04 -0.02 1.16 16 11 C 0.09 1.34 3.08 -26.74 -0.08 1.26 16 12 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -8.51 13.03 -35.23 -0.46 -8.97 16 14 C 0.13 2.44 5.90 -4.05 -0.02 2.42 16 15 N -0.73 -18.30 5.55 -59.91 -0.33 -18.63 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 20 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.04 -0.38 9.53 -39.22 -0.37 -0.75 16 25 C -0.22 -1.76 9.01 -39.50 -0.36 -2.12 16 26 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 29 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.14 1.43 7.64 -52.49 -0.40 1.02 16 31 H 0.40 4.16 6.37 -40.82 -0.26 3.90 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.37 4.78 9.05 45.56 0.41 5.19 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.39 10.45 7.67 -40.82 -0.31 10.14 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.13 0.96 6.40 -52.48 -0.34 0.63 16 40 H 0.14 0.79 6.28 -52.49 -0.33 0.46 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -34.68 344.53 -6.72 -41.40 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.53 Total: 12.74 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.86 Total: -0.89 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.06 Total: -55.15 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.57 Total: -20.72 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.68 -6.72 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753935973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.227 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds