Wall clock time and date at job start Tue Mar 31 2020 04:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46781 * 2 1 4 4 C 1.36748 * 120.00112 * 95.61674 * 3 2 1 5 5 H 1.08003 * 120.00273 * 219.56756 * 4 3 2 6 6 C 1.38857 * 120.00016 * 39.57583 * 4 3 2 7 7 N 1.31538 * 120.00289 * 19.95213 * 6 4 3 8 8 Si 1.86798 * 119.99995 * 199.96121 * 6 4 3 9 9 H 1.48503 * 109.47331 * 59.99924 * 8 6 4 10 10 H 1.48509 * 109.47217 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47437 * 299.99333 * 8 6 4 12 12 C 1.38794 * 120.00171 * 275.33503 * 3 2 1 13 13 C 1.39385 * 119.92007 * 359.73321 * 12 3 2 14 14 C 1.36590 * 120.08200 * 179.75753 * 13 12 3 15 15 C 1.40036 * 119.91194 * 0.51207 * 14 13 12 16 16 C 1.46975 * 120.07273 * 179.76199 * 15 14 13 17 17 N 1.30445 * 120.00187 * 359.97438 * 16 15 14 18 18 C 1.36806 * 120.00142 * 179.97438 * 17 16 15 19 19 C 1.39694 * 120.15498 * 314.72380 * 18 17 16 20 20 C 1.37923 * 119.84108 * 179.76698 * 19 18 17 21 21 C 1.38384 * 120.15727 * 0.48552 * 20 19 18 22 22 C 1.38380 * 120.31072 * 359.76655 * 21 20 19 23 23 C 1.37927 * 120.16113 * 359.97438 * 22 21 20 24 24 C 1.40038 * 119.85152 * 359.74050 * 15 14 13 25 25 C 1.36584 * 119.91549 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47187 * 59.99891 * 1 2 3 27 27 H 1.08995 * 109.46863 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46859 * 299.99651 * 1 2 3 29 29 H 1.08997 * 109.46794 * 240.00090 * 2 1 3 30 30 H 1.09002 * 109.47187 * 120.00109 * 2 1 3 31 31 H 0.97003 * 120.00089 * 180.02562 * 7 6 4 32 32 H 1.08000 * 119.96121 * 0.02562 * 13 12 3 33 33 H 1.07993 * 120.04086 * 180.27369 * 14 13 12 34 34 H 1.07997 * 119.99876 * 179.97438 * 16 15 14 35 35 H 1.08000 * 120.07705 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.92614 * 180.23370 * 20 19 18 37 37 H 1.07990 * 119.84329 * 179.74673 * 21 20 19 38 38 H 1.07996 * 119.91504 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.07908 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.04013 * 180.02562 * 24 15 14 41 41 H 1.08005 * 119.95957 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3554 1.9873 1.1786 5 1 2.1044 3.0247 1.3436 6 6 3.0207 1.2689 2.1632 7 7 3.6684 0.1678 1.8498 8 14 2.9958 1.8662 3.9329 9 1 1.5928 1.9231 4.4165 10 1 3.7741 0.9293 4.7826 11 1 3.6002 3.2205 4.0069 12 6 2.1442 2.0728 -1.1968 13 6 1.8109 1.4497 -2.3982 14 6 1.9289 2.1288 -3.5774 15 6 2.3955 3.4491 -3.5792 16 6 2.5288 4.1815 -4.8466 17 7 2.2127 3.6014 -5.9714 18 6 2.3363 4.2832 -7.1510 19 6 1.8759 5.5982 -7.2530 20 6 2.0081 6.2812 -8.4439 21 6 2.5860 5.6635 -9.5392 22 6 3.0395 4.3594 -9.4468 23 6 2.9186 3.6660 -8.2606 24 6 2.7344 4.0703 -2.3708 25 6 2.6084 3.3870 -1.1949 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.1328 -0.3342 2.5377 32 1 1.4549 0.4301 -2.3964 33 1 1.6663 1.6468 -4.5075 34 1 2.8884 5.1998 -4.8465 35 1 1.4206 6.0800 -6.4003 36 1 1.6561 7.2992 -8.5232 37 1 2.6833 6.2016 -10.4704 38 1 3.4891 3.8834 -10.3056 39 1 3.2726 2.6481 -8.1901 40 1 3.0942 5.0886 -2.3686 41 1 2.8700 3.8653 -0.2625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002163472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:30 Heat of formation + Delta-G solvation = 78.138556 kcal Electronic energy + Delta-G solvation = -21686.356563 eV Core-core repulsion = 18531.160475 eV Total energy + Delta-G solvation = -3155.196088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.34049 -38.77504 -36.53647 -35.13015 -32.41913 -31.08373 -30.86792 -30.14321 -29.52439 -27.67224 -25.20754 -23.68080 -22.55579 -22.05462 -21.64012 -20.25774 -19.34228 -17.51498 -17.00793 -16.44267 -15.67432 -15.25567 -15.01165 -14.70464 -14.19542 -14.04057 -13.76014 -13.38100 -13.28507 -12.98590 -12.79454 -12.64899 -12.30305 -11.98321 -11.95477 -11.57514 -11.38899 -11.30820 -11.16319 -10.99950 -10.84939 -10.64549 -10.49183 -10.25280 -9.82107 -9.56531 -9.17347 -8.92608 -8.57080 -8.14516 -7.93094 -6.78288 -6.29792 -4.11981 0.95967 1.44771 2.00406 2.53257 2.99597 3.08428 3.09869 3.23988 3.90214 3.95092 4.59088 4.70906 4.74105 4.95507 4.97869 5.02270 5.15935 5.24621 5.46207 5.64486 5.71019 5.84208 5.89914 5.92137 6.07086 6.10649 6.13183 6.24020 6.38455 6.46312 6.46978 6.55971 6.63243 6.65805 6.66954 6.76576 7.01295 7.04746 7.08563 7.20786 7.35265 7.46370 7.51099 7.75671 8.02754 8.43939 8.45465 9.03446 9.41396 10.38594 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.002744 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.706447 B =10202.017574 C =10609.558010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.414 5.414 4 C -0.324 4.324 5 H 0.093 0.907 6 C 0.041 3.959 7 N -0.853 5.853 8 Si 0.921 3.079 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.238 3.762 13 C -0.250 4.250 14 C -0.001 4.001 15 C -0.228 4.228 16 C 0.251 3.749 17 N -0.544 5.544 18 C 0.119 3.881 19 C -0.171 4.171 20 C -0.102 4.102 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.125 4.125 24 C -0.026 4.026 25 C -0.214 4.214 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.274 0.726 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 5.834 -10.518 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.096 5.096 4 C -0.452 4.452 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.486 5.486 8 Si 0.747 3.253 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.116 3.884 13 C -0.273 4.273 14 C -0.022 4.022 15 C -0.234 4.234 16 C 0.058 3.942 17 N -0.252 5.252 18 C 0.017 3.983 19 C -0.191 4.191 20 C -0.121 4.121 21 C -0.170 4.170 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.047 4.047 25 C -0.237 4.237 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.361 4.685 -10.484 11.723 hybrid contribution 0.257 0.994 0.854 1.335 sum -2.104 5.678 -9.630 11.376 Atomic orbital electron populations 1.22184 0.97731 1.00567 1.01861 1.21533 0.92002 0.84641 1.03639 1.42638 1.53208 1.10926 1.02778 1.19411 1.36262 0.98342 0.91196 0.88946 1.25514 0.93722 0.96488 1.00928 1.69988 1.27420 1.16680 1.34530 0.86080 0.78741 0.79015 0.81482 1.19591 1.20701 1.19412 1.18473 0.91445 0.92378 0.86115 1.20212 1.15016 1.00506 0.91599 1.20586 0.92205 0.92661 0.96752 1.17995 1.18745 0.96350 0.90343 1.24269 0.85965 0.93548 0.90459 1.68529 1.23472 1.35818 0.97411 1.19076 0.95565 0.90236 0.93460 1.21734 1.04494 0.94197 0.98719 1.20956 0.98697 0.99424 0.92998 1.21048 1.01707 0.95618 0.98626 1.20996 0.99431 0.94716 0.97189 1.21016 1.01069 1.00339 0.91991 1.20540 0.95004 0.97687 0.91508 1.20194 1.10868 0.94678 0.98005 0.93147 0.92995 0.92602 0.92667 0.87975 0.91585 0.87204 0.86709 0.89437 0.86365 0.86456 0.86539 0.86171 0.85804 0.87480 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.12 37.16 0.38 -2.56 16 2 C 0.11 2.21 5.28 -4.04 -0.02 2.19 16 3 N -0.41 -9.52 2.61 -113.11 -0.29 -9.81 16 4 C -0.32 -7.77 8.37 -15.13 -0.13 -7.89 16 5 H 0.09 2.17 6.92 -52.48 -0.36 1.81 16 6 C 0.04 0.98 4.91 -17.45 -0.09 0.89 16 7 N -0.85 -21.31 11.61 55.49 0.64 -20.67 16 8 Si 0.92 18.48 29.60 -169.99 -5.03 13.45 16 9 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 C 0.24 5.20 6.50 -83.86 -0.54 4.65 16 13 C -0.25 -5.03 8.74 -39.75 -0.35 -5.38 16 14 C 0.00 -0.01 9.53 -39.50 -0.38 -0.39 16 15 C -0.23 -4.15 5.87 -105.01 -0.62 -4.77 16 16 C 0.25 4.13 9.85 -14.60 -0.14 3.98 16 17 N -0.54 -9.38 9.51 -9.07 -0.09 -9.47 16 18 C 0.12 1.86 6.17 -84.56 -0.52 1.34 16 19 C -0.17 -2.36 9.18 -39.15 -0.36 -2.72 16 20 C -0.10 -1.20 10.03 -39.64 -0.40 -1.60 16 21 C -0.15 -1.68 10.04 -39.47 -0.40 -2.08 16 22 C -0.10 -1.23 10.03 -39.64 -0.40 -1.63 16 23 C -0.12 -1.76 10.00 -39.15 -0.39 -2.15 16 24 C -0.03 -0.46 9.74 -39.50 -0.38 -0.84 16 25 C -0.21 -4.40 9.20 -39.75 -0.37 -4.76 16 26 H 0.05 0.88 7.64 -51.93 -0.40 0.48 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.12 6.46 -51.93 -0.34 0.78 16 30 H 0.10 2.33 5.70 -51.93 -0.30 2.04 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 32 H 0.11 2.10 6.05 -52.49 -0.32 1.79 16 33 H 0.11 2.11 7.54 -52.49 -0.40 1.72 16 34 H 0.09 1.24 7.53 -52.49 -0.40 0.84 16 35 H 0.12 1.53 7.69 -52.49 -0.40 1.12 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.12 2.51 6.46 -52.48 -0.34 2.17 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -26.03 345.08 -10.01 -36.03 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.34 Total: 8.98 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -5.10 Total: -23.72 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.26 Total: -39.95 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.03 -10.01 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002163472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.172 kcal (2) G-P(sol) polarization free energy of solvation -26.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds