Wall clock time and date at job start Tue Mar 31 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29949 * 126.28413 * 2 1 4 4 O 1.21308 * 110.24480 * 179.68656 * 3 2 1 5 5 C 1.33641 * 109.81337 * 0.46626 * 4 3 2 6 6 C 1.50700 * 126.54768 * 179.80025 * 5 4 3 7 7 H 1.09002 * 109.53469 * 179.58895 * 6 5 4 8 8 C 1.53124 * 109.50184 * 59.49312 * 6 5 4 9 9 C 1.53121 * 109.15650 * 182.40294 * 8 6 5 10 10 C 1.53032 * 109.28051 * 57.65800 * 9 8 6 11 11 N 1.46847 * 109.52231 * 300.81604 * 10 9 8 12 12 C 1.46894 * 111.00301 * 185.84055 * 11 10 9 13 13 C 1.50697 * 109.47436 * 169.40141 * 12 11 10 14 14 O 1.21291 * 119.99911 * 353.73505 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.37106 * 119.99830 * 180.27229 * 15 13 12 17 17 H 1.07995 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99786 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00132 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99731 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47046 * 120.00347 * 20 18 16 23 23 H 1.48500 * 109.47212 * 240.00282 * 20 18 16 24 24 C 1.46852 * 111.19943 * 61.74221 * 11 10 9 25 25 N 1.31126 * 106.89689 * 359.54230 * 5 4 3 26 26 H 1.09001 * 109.46941 * 270.02012 * 1 2 3 27 27 H 1.08995 * 109.47253 * 30.02558 * 1 2 3 28 28 H 1.09005 * 109.46870 * 150.02636 * 1 2 3 29 29 H 1.08995 * 109.52484 * 302.30855 * 8 6 5 30 30 H 1.08997 * 109.52137 * 62.49837 * 8 6 5 31 31 H 1.09001 * 109.49886 * 177.60190 * 9 8 6 32 32 H 1.09000 * 109.50143 * 297.71102 * 9 8 6 33 33 H 1.08996 * 109.46140 * 180.80603 * 10 9 8 34 34 H 1.08996 * 109.46413 * 60.82919 * 10 9 8 35 35 H 1.09006 * 109.47265 * 49.39876 * 12 11 10 36 36 H 1.09005 * 109.47135 * 289.40115 * 12 11 10 37 37 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 38 38 H 0.97002 * 120.00025 * 180.02562 * 19 18 16 39 39 H 1.09008 * 109.45947 * 58.27053 * 24 11 10 40 40 H 1.08993 * 109.46589 * 178.23833 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5299 -0.6212 0.0007 6 6 4.7970 -1.4369 0.0012 7 1 4.5474 -2.4980 0.0031 8 6 5.6195 -1.1029 1.2488 9 6 6.9319 -1.8908 1.2112 10 6 7.6904 -1.5479 -0.0729 11 7 6.8621 -1.8864 -1.2373 12 6 7.6103 -1.7003 -2.4877 13 6 6.8324 -2.2967 -3.6322 14 8 5.8172 -2.9237 -3.4140 15 7 7.2616 -2.1287 -4.8987 16 6 6.5508 -2.6667 -5.9404 17 1 5.6467 -3.2246 -5.7462 18 6 6.9930 -2.4930 -7.2462 19 7 8.0927 -1.8137 -7.4826 20 14 6.0241 -3.2253 -8.6655 21 1 4.8333 -3.9377 -8.1365 22 1 5.5856 -2.1390 -9.5781 23 1 6.8828 -4.1809 -9.4102 24 6 5.6173 -1.1073 -1.2480 25 7 2.3030 -1.0841 0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 5.8361 -0.0349 1.2672 30 1 5.0558 -1.3766 2.1407 31 1 7.5407 -1.6250 2.0755 32 1 6.7159 -2.9589 1.2322 33 1 8.6187 -2.1181 -0.1096 34 1 7.9181 -0.4821 -0.0867 35 1 8.5782 -2.1954 -2.4091 36 1 7.7604 -0.6355 -2.6662 37 1 8.0734 -1.6273 -5.0733 38 1 8.4012 -1.6921 -8.3942 39 1 5.8549 -0.0434 -1.2562 40 1 5.0400 -1.3572 -2.1381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066495585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:14 Heat of formation + Delta-G solvation = 30.799022 kcal Electronic energy + Delta-G solvation = -23721.100501 eV Core-core repulsion = 20153.002354 eV Total energy + Delta-G solvation = -3568.098148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -45.57692 -39.39980 -37.71254 -36.07226 -34.43901 -33.82741 -32.55347 -31.21795 -30.64840 -29.10710 -27.55379 -24.73546 -24.53071 -23.38986 -22.95644 -21.31661 -19.64317 -19.20227 -18.07912 -17.87481 -17.36755 -16.08376 -15.86283 -15.17496 -15.04444 -14.59177 -14.25560 -14.17057 -13.91167 -13.72728 -13.48789 -13.36916 -13.20390 -12.90899 -12.48606 -12.38764 -11.98531 -11.68741 -11.53553 -11.43614 -11.30485 -11.07100 -11.01980 -10.90406 -10.65929 -10.58374 -10.33954 -10.22237 -9.81508 -9.48191 -8.47713 -7.99281 -7.91510 -6.41795 -3.82428 1.13217 2.20839 2.78461 3.16500 3.27270 3.34494 3.52810 3.89650 3.91796 4.05240 4.24677 4.64892 4.67056 4.74996 4.97943 5.06916 5.19335 5.20715 5.24810 5.28299 5.32382 5.47872 5.51089 5.56898 5.63168 5.70389 5.78604 5.81802 5.90913 5.93519 5.99316 6.03861 6.20574 6.27104 6.28712 7.15857 7.29386 7.55715 8.06689 8.16092 8.61694 9.18495 9.54543 10.06117 10.76009 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.004062 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.272205 B = 6891.588030 C = 8355.690378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.391 5.391 4 O 0.074 5.926 5 C 0.203 3.797 6 C 0.010 3.990 7 H 0.128 0.872 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.050 3.950 11 N -0.512 5.512 12 C 0.047 3.953 13 C 0.441 3.559 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.061 3.939 25 N -0.480 5.480 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.035 0.965 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 4.421 17.068 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.101 5.101 4 O 0.017 5.983 5 C -0.018 4.018 6 C -0.011 4.011 7 H 0.146 0.854 8 C -0.155 4.155 9 C -0.149 4.149 10 C -0.078 4.078 11 N -0.236 5.236 12 C -0.084 4.084 13 C 0.226 3.774 14 O -0.459 6.459 15 N -0.201 5.201 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.068 4.068 25 N -0.214 5.214 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.178 4.053 17.057 18.280 hybrid contribution 0.476 0.830 -1.068 1.434 sum -4.702 4.883 15.989 17.367 Atomic orbital electron populations 1.20119 0.83056 1.04734 1.04043 1.25919 1.00597 0.83682 1.00559 1.74616 0.89463 1.24036 1.21994 1.85261 1.22275 1.24984 1.65749 1.28809 0.96839 0.81822 0.94368 1.19955 0.85079 0.98712 0.97335 0.85442 1.21704 0.96555 1.01150 0.96078 1.21541 0.95125 1.01333 0.96950 1.22193 0.96478 0.98853 0.90305 1.61376 1.04472 1.56415 1.01337 1.21858 0.97489 0.99492 0.89523 1.19761 0.87918 0.86118 0.83585 1.90518 1.26606 1.44791 1.84033 1.41888 1.25309 1.48495 1.04445 1.19748 1.07801 1.30776 0.84419 0.87859 1.25249 0.96601 0.97299 0.98757 1.69617 1.22179 1.40779 1.21750 0.85821 0.79535 0.78616 0.80515 1.19212 1.20802 1.20716 1.22159 0.91927 0.94813 0.97863 1.71944 0.99687 1.29239 1.20521 0.89494 0.89593 0.88954 0.91188 0.91104 0.90840 0.90359 0.90252 0.94812 0.88855 0.93324 0.77503 0.91939 0.94688 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.17 2.33 8.22 -156.37 -1.28 1.05 16 3 N -0.39 -5.93 12.16 30.90 0.38 -5.55 16 4 O 0.07 1.11 11.31 18.10 0.20 1.31 16 5 C 0.20 2.95 7.03 -13.05 -0.09 2.86 16 6 C 0.01 0.13 2.82 -91.69 -0.26 -0.13 16 7 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 8 C -0.12 -1.16 5.27 -26.60 -0.14 -1.31 16 9 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16 10 C 0.05 0.56 5.46 -3.84 -0.02 0.54 16 11 N -0.51 -7.90 4.35 -236.12 -1.03 -8.92 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.15 7.31 -10.99 -0.08 10.07 16 14 O -0.58 -15.21 14.29 5.55 0.08 -15.13 16 15 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 20 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.06 0.96 4.38 -3.83 -0.02 0.94 16 25 N -0.48 -7.47 11.55 -9.87 -0.11 -7.58 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 34 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 1.41 7.98 -51.93 -0.41 0.99 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.10 2.06 6.06 -51.93 -0.31 1.75 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -32.34 335.52 -7.35 -39.69 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.63 Total: 7.46 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.95 Total: 5.50 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.10 Total: -59.93 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.28 Total: -13.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.34 -7.35 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.488 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds