Wall clock time and date at job start Tue Mar 31 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29949 * 126.28413 * 2 1 4 4 O 1.21308 * 110.24480 * 179.68656 * 3 2 1 5 5 C 1.33641 * 109.81337 * 0.46626 * 4 3 2 6 6 C 1.50700 * 126.54768 * 179.80025 * 5 4 3 7 7 H 1.09002 * 109.53469 * 179.58895 * 6 5 4 8 8 C 1.53124 * 109.50184 * 59.49312 * 6 5 4 9 9 C 1.53121 * 109.15650 * 182.40294 * 8 6 5 10 10 C 1.53032 * 109.28051 * 57.65800 * 9 8 6 11 11 N 1.46847 * 109.52231 * 300.81604 * 10 9 8 12 12 C 1.46894 * 111.00301 * 185.84055 * 11 10 9 13 13 C 1.50697 * 109.47436 * 169.40141 * 12 11 10 14 14 O 1.21291 * 119.99911 * 353.73505 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.37106 * 119.99830 * 180.27229 * 15 13 12 17 17 H 1.07995 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99786 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00132 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99731 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47046 * 120.00347 * 20 18 16 23 23 H 1.48500 * 109.47212 * 240.00282 * 20 18 16 24 24 C 1.46852 * 111.19943 * 61.74221 * 11 10 9 25 25 N 1.31126 * 106.89689 * 359.54230 * 5 4 3 26 26 H 1.09001 * 109.46941 * 270.02012 * 1 2 3 27 27 H 1.08995 * 109.47253 * 30.02558 * 1 2 3 28 28 H 1.09005 * 109.46870 * 150.02636 * 1 2 3 29 29 H 1.08995 * 109.52484 * 302.30855 * 8 6 5 30 30 H 1.08997 * 109.52137 * 62.49837 * 8 6 5 31 31 H 1.09001 * 109.49886 * 177.60190 * 9 8 6 32 32 H 1.09000 * 109.50143 * 297.71102 * 9 8 6 33 33 H 1.08996 * 109.46140 * 180.80603 * 10 9 8 34 34 H 1.08996 * 109.46413 * 60.82919 * 10 9 8 35 35 H 1.09006 * 109.47265 * 49.39876 * 12 11 10 36 36 H 1.09005 * 109.47135 * 289.40115 * 12 11 10 37 37 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 38 38 H 0.97002 * 120.00025 * 180.02562 * 19 18 16 39 39 H 1.09008 * 109.45947 * 58.27053 * 24 11 10 40 40 H 1.08993 * 109.46589 * 178.23833 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5299 -0.6212 0.0007 6 6 4.7970 -1.4369 0.0012 7 1 4.5474 -2.4980 0.0031 8 6 5.6195 -1.1029 1.2488 9 6 6.9319 -1.8908 1.2112 10 6 7.6904 -1.5479 -0.0729 11 7 6.8621 -1.8864 -1.2373 12 6 7.6103 -1.7003 -2.4877 13 6 6.8324 -2.2967 -3.6322 14 8 5.8172 -2.9237 -3.4140 15 7 7.2616 -2.1287 -4.8987 16 6 6.5508 -2.6667 -5.9404 17 1 5.6467 -3.2246 -5.7462 18 6 6.9930 -2.4930 -7.2462 19 7 8.0927 -1.8137 -7.4826 20 14 6.0241 -3.2253 -8.6655 21 1 4.8333 -3.9377 -8.1365 22 1 5.5856 -2.1390 -9.5781 23 1 6.8828 -4.1809 -9.4102 24 6 5.6173 -1.1073 -1.2480 25 7 2.3030 -1.0841 0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5135 29 1 5.8361 -0.0349 1.2672 30 1 5.0558 -1.3766 2.1407 31 1 7.5407 -1.6250 2.0755 32 1 6.7159 -2.9589 1.2322 33 1 8.6187 -2.1181 -0.1096 34 1 7.9181 -0.4821 -0.0867 35 1 8.5782 -2.1954 -2.4091 36 1 7.7604 -0.6355 -2.6662 37 1 8.0734 -1.6273 -5.0733 38 1 8.4012 -1.6921 -8.3942 39 1 5.8549 -0.0434 -1.2562 40 1 5.0400 -1.3572 -2.1381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066495585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:13 Heat of formation + Delta-G solvation = 5.938067 kcal Electronic energy + Delta-G solvation = -23722.178553 eV Core-core repulsion = 20153.002354 eV Total energy + Delta-G solvation = -3569.176200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.69671 -40.73399 -39.31547 -37.17936 -36.03083 -35.37995 -33.62964 -33.21246 -31.64920 -30.03887 -29.01901 -26.52118 -25.62372 -24.46675 -24.17177 -22.35198 -21.01082 -20.61029 -19.87535 -19.20823 -18.49719 -17.72906 -17.08950 -16.56356 -16.37580 -16.15045 -15.73816 -15.39324 -15.11803 -14.93720 -14.70218 -14.50698 -14.28262 -13.87567 -13.79747 -13.52656 -13.33903 -13.20643 -13.06336 -12.78943 -12.55644 -12.40381 -12.36096 -12.13390 -12.11785 -11.79551 -11.67001 -11.55197 -11.43094 -10.90394 -10.26225 -9.98538 -9.21606 -8.46365 -5.94408 0.00095 1.10774 1.35550 1.40695 1.54513 1.66979 2.07674 2.28059 2.48509 2.84097 3.00370 3.20978 3.40071 3.66161 3.71733 3.84341 4.10672 4.20939 4.23701 4.34430 4.45452 4.46339 4.53502 4.57868 4.61612 4.64540 4.71426 4.76633 4.84055 4.95385 4.98204 5.05012 5.11468 5.17972 5.41532 5.45187 5.86927 6.05497 6.23110 6.62164 7.04110 7.14582 7.58707 8.15026 8.71317 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.004062 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.272205 B = 6891.588030 C = 8355.690378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.409 5.409 4 O 0.068 5.932 5 C 0.203 3.797 6 C 0.017 3.983 7 H 0.113 0.887 8 C -0.109 4.109 9 C -0.106 4.106 10 C 0.046 3.954 11 N -0.529 5.529 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.615 6.615 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.989 3.011 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.068 3.932 25 N -0.508 5.508 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.044 0.956 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 4.951 18.443 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.122 5.122 4 O 0.013 5.987 5 C -0.018 4.018 6 C -0.004 4.004 7 H 0.131 0.869 8 C -0.147 4.147 9 C -0.143 4.143 10 C -0.080 4.080 11 N -0.254 5.254 12 C -0.072 4.072 13 C 0.226 3.774 14 O -0.500 6.500 15 N -0.214 5.214 16 C -0.460 4.460 17 H 0.094 0.906 18 C -0.211 4.211 19 N -0.562 5.562 20 Si 0.813 3.187 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.061 4.061 25 N -0.242 5.242 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.466 4.597 18.450 19.532 hybrid contribution 0.235 0.655 -1.451 1.609 sum -4.231 5.253 16.999 18.288 Atomic orbital electron populations 1.20370 0.80111 1.05658 1.05843 1.26734 1.02329 0.82936 0.99058 1.74595 0.89641 1.24618 1.23317 1.85229 1.22415 1.24944 1.66076 1.29084 0.97148 0.81923 0.93622 1.19936 0.84748 0.97647 0.98037 0.86876 1.21727 0.96511 1.01959 0.94525 1.21565 0.94808 1.00814 0.97134 1.22383 0.96546 1.00104 0.88990 1.61349 1.04908 1.57117 1.01990 1.21750 0.97332 1.00208 0.87893 1.20896 0.87461 0.84675 0.84365 1.90494 1.28497 1.46260 1.84786 1.41955 1.25497 1.49078 1.04851 1.19658 1.07994 1.32268 0.86103 0.90568 1.25975 0.97435 0.97309 1.00428 1.69670 1.22829 1.41022 1.22630 0.84927 0.78049 0.78170 0.77539 1.20015 1.19738 1.19416 1.21942 0.92045 0.95276 0.96873 1.71967 1.00395 1.30226 1.21601 0.87133 0.88286 0.88338 0.90153 0.89607 0.87450 0.91019 0.88747 0.93298 0.86216 0.91436 0.77005 0.91352 0.93756 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.51 71.24 0.75 -0.34 16 2 C 0.16 4.52 8.22 138.46 1.14 5.66 16 3 N -0.41 -12.33 12.16 -60.30 -0.73 -13.07 16 4 O 0.07 2.01 11.31 74.84 0.85 2.86 16 5 C 0.20 5.96 7.03 88.38 0.62 6.58 16 6 C 0.02 0.45 2.82 -11.49 -0.03 0.42 16 7 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 8 C -0.11 -1.92 5.27 30.68 0.16 -1.76 16 9 C -0.11 -1.63 6.09 30.65 0.19 -1.44 16 10 C 0.05 0.90 5.46 86.32 0.47 1.37 16 11 N -0.53 -15.77 4.35 -900.94 -3.92 -19.68 16 12 C 0.06 1.95 5.45 85.56 0.47 2.41 16 13 C 0.44 20.69 7.31 87.66 0.64 21.33 16 14 O -0.61 -33.94 14.29 -3.07 -0.04 -33.99 16 15 N -0.58 -29.53 5.29 -306.99 -1.62 -31.15 16 16 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 17 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 19 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 20 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C 0.07 2.14 4.38 86.32 0.38 2.52 16 25 N -0.51 -15.94 11.55 -303.20 -3.50 -19.45 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.59 8.01 -2.39 -0.02 1.57 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 3.34 7.98 -2.38 -0.02 3.32 16 36 H 0.07 1.99 8.12 -2.38 -0.02 1.97 16 37 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 38 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.05 2.24 6.06 -2.39 -0.01 2.23 16 Total: -1.00 -72.66 335.52 -0.27 -72.93 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.33 Total: 27.11 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.06 Total: 18.46 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -9.49 Total: -132.89 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: 0.80 Total: -31.13 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -72.66 -0.27 -72.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.866 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds