Wall clock time and date at job start Tue Mar 31 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30944 * 126.44969 * 2 1 4 4 C 1.35222 * 105.58186 * 179.89581 * 3 2 1 5 5 C 1.48450 * 126.40751 * 180.13378 * 4 3 2 6 6 O 1.21487 * 119.99564 * 0.25742 * 5 4 3 7 7 N 1.34777 * 120.00047 * 180.24988 * 5 4 3 8 8 C 1.46494 * 119.99667 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53042 * 109.45746 * 295.02273 * 9 8 7 11 11 C 1.53187 * 109.31686 * 178.60370 * 10 9 8 12 12 N 1.46925 * 108.76646 * 54.65330 * 11 10 9 13 13 C 1.36939 * 120.63316 * 126.36257 * 12 11 10 14 14 H 1.07994 * 120.00062 * 208.02601 * 13 12 11 15 15 C 1.38810 * 119.99703 * 28.02635 * 13 12 11 16 16 N 1.31626 * 120.00220 * 17.52255 * 15 13 12 17 17 Si 1.86793 * 120.00006 * 197.52627 * 15 13 12 18 18 H 1.48503 * 109.47343 * 94.06441 * 17 15 13 19 19 H 1.48509 * 109.47363 * 214.06676 * 17 15 13 20 20 H 1.48506 * 109.47377 * 334.06464 * 17 15 13 21 21 C 1.46930 * 118.73861 * 306.38962 * 12 11 10 22 22 C 1.53040 * 109.46238 * 174.97197 * 9 8 7 23 23 N 1.30665 * 107.18428 * 0.36948 * 4 3 2 24 24 O 1.21291 * 110.11578 * 359.77185 * 23 4 3 25 25 H 1.09004 * 109.47421 * 179.71388 * 1 2 3 26 26 H 1.09004 * 109.46938 * 299.71093 * 1 2 3 27 27 H 1.09002 * 109.47328 * 59.70827 * 1 2 3 28 28 H 0.96998 * 120.00041 * 0.02562 * 7 5 4 29 29 H 1.09006 * 109.47319 * 299.99590 * 8 7 5 30 30 H 1.08997 * 109.47855 * 60.00416 * 8 7 5 31 31 H 1.08999 * 109.46275 * 54.99525 * 9 8 7 32 32 H 1.09002 * 109.49793 * 298.56788 * 10 9 8 33 33 H 1.08999 * 109.49495 * 58.66233 * 10 9 8 34 34 H 1.09002 * 109.59236 * 294.87133 * 11 10 9 35 35 H 1.08996 * 109.70756 * 174.50612 * 11 10 9 36 36 H 0.96995 * 120.00268 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.58758 * 293.81768 * 21 12 11 38 38 H 1.09004 * 109.70619 * 173.46391 * 21 12 11 39 39 H 1.09001 * 109.49897 * 301.33562 * 22 9 8 40 40 H 1.09001 * 109.49945 * 61.39363 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5484 0.5716 0.0024 5 6 4.7973 1.3741 0.0061 6 8 4.7394 2.5876 0.0120 7 7 5.9952 0.7565 0.0031 8 6 7.2276 1.5485 0.0074 9 6 8.4365 0.6107 0.0020 10 6 8.4653 -0.1912 1.3052 11 6 9.6568 -1.1538 1.2816 12 7 10.8808 -0.3846 1.0196 13 6 11.9586 -0.4811 1.8588 14 1 12.6407 0.3501 1.9594 15 6 12.1743 -1.6473 2.5801 16 7 11.5758 -2.7633 2.2212 17 14 13.3139 -1.6328 4.0600 18 1 12.5189 -1.4130 5.2949 19 1 14.0220 -2.9349 4.1524 20 1 14.3070 -0.5390 3.9095 21 6 10.9263 0.4907 -0.1597 22 6 9.7204 1.4346 -0.1200 23 7 3.4645 -0.7323 -0.0044 24 8 2.3011 -1.0754 -0.0059 25 1 -0.3634 -1.0277 -0.0051 26 1 -0.3633 0.5094 0.8926 27 1 -0.3634 0.5184 -0.8874 28 1 6.0414 -0.2124 -0.0019 29 1 7.2556 2.1818 -0.8794 30 1 7.2555 2.1726 0.9006 31 1 8.3620 -0.0730 -0.8436 32 1 8.5650 0.4905 2.1498 33 1 7.5405 -0.7597 1.4030 34 1 9.5140 -1.8929 0.4932 35 1 9.7411 -1.6580 2.2442 36 1 11.7263 -3.5781 2.7255 37 1 10.8871 -0.1143 -1.0655 38 1 11.8473 1.0737 -0.1494 39 1 9.6891 2.0236 -1.0366 40 1 9.8078 2.1014 0.7379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124410967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:05 Heat of formation + Delta-G solvation = 48.787446 kcal Electronic energy + Delta-G solvation = -23242.447352 eV Core-core repulsion = 19675.129241 eV Total energy + Delta-G solvation = -3567.318111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.03950 -39.88669 -37.89171 -36.14516 -35.11868 -34.00718 -32.90116 -30.75041 -29.88759 -29.33825 -27.42969 -25.54747 -23.90008 -23.34557 -22.28816 -21.19457 -20.76403 -19.21525 -18.67435 -18.40769 -17.20117 -16.73788 -16.02933 -15.40840 -15.03843 -14.83815 -14.39912 -14.07386 -13.95127 -13.67973 -13.56252 -13.53271 -13.14004 -12.62671 -12.47617 -12.38823 -12.08615 -11.84148 -11.53832 -11.42161 -11.01686 -10.74582 -10.61758 -10.51246 -10.42977 -10.26652 -10.20627 -9.92745 -9.61260 -9.48151 -9.19894 -8.47874 -6.68767 -5.80109 -3.22292 0.53086 1.33568 2.32106 2.43014 2.88749 3.37233 3.44525 3.45676 3.47482 3.73195 4.49010 4.56237 4.77622 4.79536 4.95577 5.02577 5.17580 5.30437 5.31361 5.39697 5.49266 5.54918 5.77552 5.83952 5.96698 6.10181 6.17861 6.29700 6.45809 6.54142 6.63593 6.72365 6.78694 6.96162 7.15948 7.34159 7.62823 7.63440 7.79088 7.86437 8.44134 9.20361 9.83910 10.40518 11.28459 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.002980 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.208599 B = 9394.522422 C =10065.696174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.179 3.821 3 N -0.443 5.443 4 C 0.138 3.862 5 C 0.605 3.395 6 O -0.504 6.504 7 N -0.701 5.701 8 C 0.124 3.876 9 C -0.091 4.091 10 C -0.137 4.137 11 C 0.171 3.829 12 N -0.592 5.592 13 C -0.252 4.252 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.146 3.854 22 C -0.124 4.124 23 N -0.346 5.346 24 O 0.097 5.903 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.409 0.591 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.017 0.983 35 H 0.087 0.913 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 3.716 -5.741 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 N -0.177 5.177 4 C -0.136 4.136 5 C 0.385 3.615 6 O -0.376 6.376 7 N -0.354 5.354 8 C 0.001 3.999 9 C -0.110 4.110 10 C -0.176 4.176 11 C 0.045 3.955 12 N -0.315 5.315 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.019 3.981 22 C -0.164 4.164 23 N -0.051 5.051 24 O 0.029 5.971 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.245 0.755 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.214 4.433 -5.670 21.457 hybrid contribution 0.353 -0.684 0.788 1.102 sum -19.861 3.749 -4.882 20.793 Atomic orbital electron populations 1.20457 0.79533 1.05919 1.06029 1.29030 0.99191 0.79996 0.95907 1.72018 0.99122 1.28220 1.18361 1.25707 0.95341 0.87846 1.04754 1.16326 0.80724 0.86091 0.78336 1.90837 1.86003 1.12214 1.48574 1.45887 1.04913 1.11493 1.73110 1.21749 0.81554 0.94058 1.02494 1.21340 0.92991 0.96897 0.99813 1.22277 0.99925 0.99558 0.95848 1.20755 0.82559 0.90598 1.01561 1.44060 1.12115 1.50319 1.25032 1.19210 1.04026 0.97005 1.17911 0.91643 1.25044 0.99135 0.94750 1.00793 1.70039 1.46565 0.98740 1.39394 0.86279 0.80348 0.76956 0.83215 1.21497 1.21789 1.20374 1.20881 0.94983 0.91964 0.90224 1.21988 0.95300 0.98355 1.00736 1.74958 0.97798 1.14951 1.17405 1.85309 1.11229 1.35965 1.64624 0.88115 0.87535 0.87551 0.75451 0.91167 0.90863 0.91069 0.92349 0.93618 0.96463 0.89484 0.93664 0.96482 0.92635 0.92801 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 36.00 0.38 0.22 16 2 C 0.18 1.53 8.50 -13.00 -0.11 1.42 16 3 N -0.44 -5.67 11.57 -9.93 -0.11 -5.78 16 4 C 0.14 1.93 8.01 -156.18 -1.25 0.68 16 5 C 0.60 9.32 7.85 -12.05 -0.09 9.23 16 6 O -0.50 -9.20 17.10 5.38 0.09 -9.11 16 7 N -0.70 -9.74 5.27 -61.05 -0.32 -10.06 16 8 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 9 C -0.09 -1.44 2.19 -90.57 -0.20 -1.63 16 10 C -0.14 -2.50 5.25 -26.61 -0.14 -2.64 16 11 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 12 N -0.59 -14.63 2.99 -172.32 -0.52 -15.15 16 13 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 14 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 16 N -0.90 -26.12 11.22 55.49 0.62 -25.50 16 17 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 22 C -0.12 -2.05 5.36 -26.61 -0.14 -2.19 16 23 N -0.35 -4.34 11.89 30.93 0.37 -3.97 16 24 O 0.10 0.96 11.29 17.98 0.20 1.16 16 25 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.41 5.30 7.38 -40.82 -0.30 5.00 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.75 7.15 -51.93 -0.37 0.38 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 1.12 7.94 -51.93 -0.41 0.70 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -33.51 335.57 -7.09 -40.60 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.60 Total: -0.59 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.85 Total: 6.66 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.04 Total: -60.47 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.30 Total: -7.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.51 -7.09 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124410967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.387 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds