Wall clock time and date at job start Tue Mar 31 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30944 * 126.44969 * 2 1 4 4 C 1.35222 * 105.58186 * 179.89581 * 3 2 1 5 5 C 1.48450 * 126.40751 * 180.13378 * 4 3 2 6 6 O 1.21487 * 119.99564 * 0.25742 * 5 4 3 7 7 N 1.34777 * 120.00047 * 180.24988 * 5 4 3 8 8 C 1.46494 * 119.99667 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53042 * 109.45746 * 295.02273 * 9 8 7 11 11 C 1.53187 * 109.31686 * 178.60370 * 10 9 8 12 12 N 1.46925 * 108.76646 * 54.65330 * 11 10 9 13 13 C 1.36939 * 120.63316 * 126.36257 * 12 11 10 14 14 H 1.07994 * 120.00062 * 208.02601 * 13 12 11 15 15 C 1.38810 * 119.99703 * 28.02635 * 13 12 11 16 16 N 1.31626 * 120.00220 * 17.52255 * 15 13 12 17 17 Si 1.86793 * 120.00006 * 197.52627 * 15 13 12 18 18 H 1.48503 * 109.47343 * 94.06441 * 17 15 13 19 19 H 1.48509 * 109.47363 * 214.06676 * 17 15 13 20 20 H 1.48506 * 109.47377 * 334.06464 * 17 15 13 21 21 C 1.46930 * 118.73861 * 306.38962 * 12 11 10 22 22 C 1.53040 * 109.46238 * 174.97197 * 9 8 7 23 23 N 1.30665 * 107.18428 * 0.36948 * 4 3 2 24 24 O 1.21291 * 110.11578 * 359.77185 * 23 4 3 25 25 H 1.09004 * 109.47421 * 179.71388 * 1 2 3 26 26 H 1.09004 * 109.46938 * 299.71093 * 1 2 3 27 27 H 1.09002 * 109.47328 * 59.70827 * 1 2 3 28 28 H 0.96998 * 120.00041 * 0.02562 * 7 5 4 29 29 H 1.09006 * 109.47319 * 299.99590 * 8 7 5 30 30 H 1.08997 * 109.47855 * 60.00416 * 8 7 5 31 31 H 1.08999 * 109.46275 * 54.99525 * 9 8 7 32 32 H 1.09002 * 109.49793 * 298.56788 * 10 9 8 33 33 H 1.08999 * 109.49495 * 58.66233 * 10 9 8 34 34 H 1.09002 * 109.59236 * 294.87133 * 11 10 9 35 35 H 1.08996 * 109.70756 * 174.50612 * 11 10 9 36 36 H 0.96995 * 120.00268 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.58758 * 293.81768 * 21 12 11 38 38 H 1.09004 * 109.70619 * 173.46391 * 21 12 11 39 39 H 1.09001 * 109.49897 * 301.33562 * 22 9 8 40 40 H 1.09001 * 109.49945 * 61.39363 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5484 0.5716 0.0024 5 6 4.7973 1.3741 0.0061 6 8 4.7394 2.5876 0.0120 7 7 5.9952 0.7565 0.0031 8 6 7.2276 1.5485 0.0074 9 6 8.4365 0.6107 0.0020 10 6 8.4653 -0.1912 1.3052 11 6 9.6568 -1.1538 1.2816 12 7 10.8808 -0.3846 1.0196 13 6 11.9586 -0.4811 1.8588 14 1 12.6407 0.3501 1.9594 15 6 12.1743 -1.6473 2.5801 16 7 11.5758 -2.7633 2.2212 17 14 13.3139 -1.6328 4.0600 18 1 12.5189 -1.4130 5.2949 19 1 14.0220 -2.9349 4.1524 20 1 14.3070 -0.5390 3.9095 21 6 10.9263 0.4907 -0.1597 22 6 9.7204 1.4346 -0.1200 23 7 3.4645 -0.7323 -0.0044 24 8 2.3011 -1.0754 -0.0059 25 1 -0.3634 -1.0277 -0.0051 26 1 -0.3633 0.5094 0.8926 27 1 -0.3634 0.5184 -0.8874 28 1 6.0414 -0.2124 -0.0019 29 1 7.2556 2.1818 -0.8794 30 1 7.2555 2.1726 0.9006 31 1 8.3620 -0.0730 -0.8436 32 1 8.5650 0.4905 2.1498 33 1 7.5405 -0.7597 1.4030 34 1 9.5140 -1.8929 0.4932 35 1 9.7411 -1.6580 2.2442 36 1 11.7263 -3.5781 2.7255 37 1 10.8871 -0.1143 -1.0655 38 1 11.8473 1.0737 -0.1494 39 1 9.6891 2.0236 -1.0366 40 1 9.8078 2.1014 0.7379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124410967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:03 Heat of formation + Delta-G solvation = 23.733633 kcal Electronic energy + Delta-G solvation = -23243.533767 eV Core-core repulsion = 19675.129241 eV Total energy + Delta-G solvation = -3568.404526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.90530 -41.08994 -39.42203 -37.04290 -36.54967 -34.98303 -34.36732 -32.47451 -31.54994 -29.89326 -28.83502 -26.92257 -25.43124 -24.25334 -23.86033 -22.71717 -21.87048 -20.75601 -19.53874 -19.41898 -18.70337 -18.14958 -17.17337 -16.84372 -16.60974 -15.84767 -15.62417 -15.45468 -15.31735 -15.09829 -14.76329 -14.24616 -14.19310 -14.05974 -13.91000 -13.52623 -13.11362 -13.06546 -12.90139 -12.81949 -12.59598 -12.41537 -12.30972 -11.98493 -11.88363 -11.79089 -11.64574 -11.21499 -11.20124 -11.16177 -10.55488 -10.38037 -8.68825 -7.88639 -5.33322 -0.35212 0.50079 1.36594 1.45046 1.46767 1.55589 1.72331 1.78515 2.50174 2.59223 2.86947 3.25388 3.66944 3.70451 3.78595 3.88605 4.00839 4.24561 4.47518 4.50705 4.53518 4.61138 4.66890 4.67677 4.71125 4.82773 4.88988 4.99743 5.03837 5.14132 5.15029 5.24708 5.25769 5.39472 5.52736 5.64810 5.75776 6.04918 6.38790 6.66635 6.86682 7.14563 7.86655 8.37434 9.17581 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.002980 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.208599 B = 9394.522422 C =10065.696174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.201 3.799 3 N -0.483 5.483 4 C 0.115 3.885 5 C 0.606 3.394 6 O -0.539 6.539 7 N -0.694 5.694 8 C 0.134 3.866 9 C -0.080 4.080 10 C -0.123 4.123 11 C 0.177 3.823 12 N -0.612 5.612 13 C -0.261 4.261 14 H 0.066 0.934 15 C -0.052 4.052 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.288 1.288 19 H -0.295 1.295 20 H -0.268 1.268 21 C 0.140 3.860 22 C -0.114 4.114 23 N -0.354 5.354 24 O 0.107 5.893 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.415 0.585 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.063 0.937 34 H -0.001 1.001 35 H 0.050 0.950 36 H 0.249 0.751 37 H 0.016 0.984 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.947 4.347 -6.196 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.018 4.018 3 N -0.217 5.217 4 C -0.158 4.158 5 C 0.388 3.612 6 O -0.414 6.414 7 N -0.346 5.346 8 C 0.011 3.989 9 C -0.099 4.099 10 C -0.162 4.162 11 C 0.051 3.949 12 N -0.336 5.336 13 C -0.391 4.391 14 H 0.084 0.916 15 C -0.247 4.247 16 N -0.581 5.581 17 Si 0.793 3.207 18 H -0.215 1.215 19 H -0.221 1.221 20 H -0.192 1.192 21 C 0.015 3.985 22 C -0.153 4.153 23 N -0.059 5.059 24 O 0.036 5.964 25 H 0.149 0.851 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.252 0.748 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.044 5.084 -6.142 23.441 hybrid contribution 0.831 -0.932 0.879 1.527 sum -21.213 4.152 -5.264 22.247 Atomic orbital electron populations 1.20916 0.75230 1.08404 1.07350 1.30112 1.00688 0.78438 0.92545 1.72007 0.99137 1.30009 1.20531 1.25468 0.95365 0.88299 1.06704 1.16488 0.81389 0.85809 0.77532 1.90805 1.86621 1.13623 1.50373 1.45821 1.04620 1.11700 1.72471 1.21588 0.80770 0.93509 1.02995 1.21194 0.93556 0.96844 0.98303 1.22060 0.98258 0.98688 0.97200 1.20560 0.84260 0.91246 0.98789 1.44347 1.11966 1.50973 1.26298 1.19529 1.04494 0.96853 1.18269 0.91641 1.25779 1.01095 0.94520 1.03341 1.70184 1.48298 0.99119 1.40473 0.85290 0.78677 0.76829 0.79894 1.21451 1.22147 1.19242 1.21063 0.97034 0.91921 0.88523 1.21855 0.93518 0.97542 1.02391 1.74936 0.99201 1.14338 1.17407 1.85283 1.10678 1.36224 1.64185 0.85088 0.86041 0.85892 0.74844 0.89772 0.91309 0.90416 0.93215 0.91832 0.98338 0.93187 0.94161 0.96560 0.92669 0.89312 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 10.51 71.23 0.75 0.64 16 2 C 0.20 3.01 8.50 88.36 0.75 3.76 16 3 N -0.48 -11.87 11.57 -302.76 -3.50 -15.38 16 4 C 0.12 3.15 8.01 137.33 1.10 4.25 16 5 C 0.61 18.38 7.85 86.97 0.68 19.06 16 6 O -0.54 -19.57 17.10 -3.67 -0.06 -19.63 16 7 N -0.69 -18.46 5.27 -465.38 -2.45 -20.91 16 8 C 0.13 3.54 5.06 86.38 0.44 3.98 16 9 C -0.08 -2.38 2.19 -10.76 -0.02 -2.40 16 10 C -0.12 -4.43 5.25 30.67 0.16 -4.27 16 11 C 0.18 8.43 5.31 86.36 0.46 8.89 16 12 N -0.61 -30.54 2.99 -699.11 -2.09 -32.63 16 13 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 14 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 15 C -0.05 -2.93 4.90 84.86 0.42 -2.51 16 16 N -0.93 -55.60 11.22 21.65 0.24 -55.35 16 17 Si 0.96 45.29 29.59 68.60 2.03 47.32 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 C 0.14 5.61 6.51 86.36 0.56 6.17 16 22 C -0.11 -3.52 5.36 30.67 0.16 -3.35 16 23 N -0.35 -8.53 11.89 -59.35 -0.71 -9.23 16 24 O 0.11 1.93 11.29 74.40 0.84 2.77 16 25 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.41 10.23 7.38 -92.71 -0.68 9.55 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 2.04 7.15 -2.39 -0.02 2.03 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.05 2.74 6.06 -2.39 -0.01 2.72 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 2.18 7.94 -2.38 -0.02 2.16 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -74.93 335.57 0.94 -73.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.38 Total: 8.49 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.26 Total: 20.59 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -8.51 Total: -133.51 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.78 Total: -16.87 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.93 0.94 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124410967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.722 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds