Wall clock time and date at job start Tue Mar 31 2020 04:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35769 * 117.00004 * 2 1 4 4 C 1.35597 * 126.08193 * 177.93222 * 3 2 1 5 5 C 1.41063 * 107.79430 * 180.15835 * 4 3 2 6 6 C 1.47719 * 125.97808 * 179.82715 * 5 4 3 7 7 O 1.21565 * 120.00354 * 354.21138 * 6 5 4 8 8 N 1.34775 * 119.99788 * 174.21033 * 6 5 4 9 9 C 1.46969 * 120.59696 * 4.70860 * 8 6 5 10 10 C 1.53368 * 108.63252 * 235.20662 * 9 8 6 11 11 N 1.46962 * 108.63623 * 310.56784 * 10 9 8 12 12 C 1.36934 * 120.59778 * 235.21054 * 11 10 9 13 13 H 1.07998 * 120.00211 * 30.67877 * 12 11 10 14 14 C 1.38821 * 120.00162 * 210.95975 * 12 11 10 15 15 N 1.31624 * 119.99484 * 9.33905 * 14 12 11 16 16 Si 1.86794 * 120.00116 * 189.34454 * 14 12 11 17 17 H 1.48501 * 109.47057 * 89.99644 * 16 14 12 18 18 H 1.48499 * 109.46963 * 209.99794 * 16 14 12 19 19 H 1.48497 * 109.47337 * 329.99605 * 16 14 12 20 20 C 1.46969 * 118.81176 * 55.48154 * 11 10 9 21 21 C 1.46970 * 120.59678 * 184.67865 * 8 6 5 22 22 N 1.31863 * 108.03885 * 359.56044 * 5 4 3 23 23 N 1.35841 * 126.08651 * 357.61045 * 3 2 1 24 24 C 1.46506 * 125.94457 * 0.02829 * 23 3 2 25 25 H 1.08991 * 109.47212 * 52.21763 * 1 2 3 26 26 H 1.09000 * 109.47090 * 172.22172 * 1 2 3 27 27 H 1.09000 * 109.46645 * 292.22086 * 1 2 3 28 28 H 1.07999 * 126.10491 * 359.97438 * 4 3 2 29 29 H 1.08995 * 109.61330 * 115.45652 * 9 8 6 30 30 H 1.09001 * 109.60624 * 354.94358 * 9 8 6 31 31 H 1.09005 * 109.61026 * 190.82763 * 10 9 8 32 32 H 1.08999 * 109.61728 * 70.31783 * 10 9 8 33 33 H 0.97003 * 119.99568 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.60841 * 64.26170 * 20 11 10 35 35 H 1.08992 * 109.61565 * 184.77790 * 20 11 10 36 36 H 1.08992 * 109.61602 * 244.54468 * 21 8 6 37 37 H 1.09005 * 109.60571 * 5.05805 * 21 8 6 38 38 H 1.08994 * 109.47396 * 277.12294 * 24 23 3 39 39 H 1.08999 * 109.46652 * 37.12821 * 24 23 3 40 40 H 1.09002 * 109.46180 * 157.11865 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3837 1.4241 0.0395 5 6 3.5976 2.8184 0.0273 6 6 4.9100 3.4954 0.0633 7 8 5.9257 2.8448 0.2140 8 7 4.9812 4.8346 -0.0710 9 6 3.7575 5.6446 -0.1505 10 6 3.8072 6.4827 -1.4340 11 7 5.1100 7.1592 -1.5029 12 6 5.1825 8.5199 -1.6393 13 1 4.4082 9.1464 -1.2218 14 6 6.2481 9.0936 -2.3193 15 7 7.0879 8.3325 -2.9886 16 14 6.4903 10.9454 -2.2842 17 1 7.3520 11.3102 -1.1311 18 1 7.1397 11.3837 -3.5457 19 1 5.1716 11.6146 -2.1479 20 6 6.3338 6.3488 -1.4289 21 6 6.2841 5.5112 -0.1398 22 7 2.4211 3.4114 -0.0278 23 7 1.4314 2.4206 -0.0458 24 6 -0.0145 2.6500 -0.1033 25 1 -0.3633 0.6296 -0.8121 26 1 -0.3633 -1.0182 -0.1391 27 1 -0.3632 0.3886 0.9514 28 1 4.1493 0.6632 0.0770 29 1 3.6985 6.3042 0.7151 30 1 2.8864 4.9898 -0.1748 31 1 3.0097 7.2256 -1.4170 32 1 3.6863 5.8325 -2.3005 33 1 7.8328 8.7334 -3.4634 34 1 6.3887 5.6892 -2.2950 35 1 7.2053 7.0031 -1.4085 36 1 6.4050 6.1613 0.7266 37 1 7.0816 4.7683 -0.1569 38 1 -0.3557 2.5615 -1.1347 39 1 -0.5245 1.9097 0.5130 40 1 -0.2387 3.6495 0.2693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311957771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:36 Heat of formation + Delta-G solvation = 77.899204 kcal Electronic energy + Delta-G solvation = -24148.769299 eV Core-core repulsion = 20582.713569 eV Total energy + Delta-G solvation = -3566.055731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73229 -39.46115 -38.26014 -36.67338 -33.93737 -33.53856 -31.13309 -30.80470 -29.65519 -28.17793 -27.07378 -26.36311 -24.04573 -22.94660 -22.23616 -21.56076 -20.13790 -18.87706 -17.82139 -16.94796 -16.76086 -16.17394 -15.81912 -15.27776 -15.10108 -14.88931 -14.71329 -14.44077 -14.06215 -13.54660 -13.45740 -13.41035 -13.21918 -13.15454 -12.97501 -12.31069 -11.93349 -11.67567 -11.54080 -11.13798 -10.97472 -10.69153 -10.55926 -10.18297 -10.12770 -9.89893 -9.83859 -9.35964 -9.24479 -8.53442 -8.51253 -8.16203 -6.60064 -5.77664 -3.28402 1.38022 1.98020 2.19345 2.65109 3.37417 3.43536 3.45027 3.49641 3.69287 4.04783 4.40420 4.45985 4.51307 4.71639 4.75744 4.85281 5.10181 5.19601 5.25975 5.39504 5.50035 5.74260 5.84410 5.95499 5.97054 6.13178 6.20395 6.39806 6.42557 6.53834 6.71642 6.86002 7.01983 7.17997 7.34369 7.36579 7.68194 7.76367 7.96776 8.45343 8.56205 9.19668 9.80487 10.38794 11.28465 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.003663 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.074947 B = 7641.848274 C = 8283.343066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.290 6.290 3 C 0.268 3.732 4 C -0.235 4.235 5 C 0.074 3.926 6 C 0.586 3.414 7 O -0.541 6.541 8 N -0.578 5.578 9 C 0.059 3.941 10 C 0.135 3.865 11 N -0.594 5.594 12 C -0.253 4.253 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.905 5.905 16 Si 0.908 3.092 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.158 3.842 21 C 0.085 3.915 22 N -0.247 5.247 23 N -0.400 5.400 24 C 0.076 3.924 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.165 0.835 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.255 0.745 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 -13.985 6.628 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.196 6.196 3 C 0.101 3.899 4 C -0.265 4.265 5 C -0.092 4.092 6 C 0.371 3.629 7 O -0.418 6.418 8 N -0.309 5.309 9 C -0.066 4.066 10 C 0.008 3.992 11 N -0.316 5.316 12 C -0.383 4.383 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.550 5.550 16 Si 0.738 3.262 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.031 3.969 21 C -0.038 4.038 22 N -0.077 5.077 23 N -0.196 5.196 24 C -0.064 4.064 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.182 0.818 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.820 -13.456 6.545 21.776 hybrid contribution 0.068 0.372 -0.111 0.394 sum -15.753 -13.085 6.434 21.465 Atomic orbital electron populations 1.23637 0.78174 1.05182 1.01481 1.86297 1.21469 1.21844 1.89974 1.19582 0.91090 0.78889 1.00322 1.20318 0.91887 0.95604 1.18654 1.22047 0.92808 0.93001 1.01374 1.17072 0.85757 0.82049 0.78065 1.90752 1.34722 1.64981 1.51310 1.47975 1.09346 1.04888 1.68647 1.23321 0.87402 0.95598 1.00316 1.21258 0.90039 0.94510 0.93429 1.44032 0.99317 1.03242 1.85058 1.19226 1.08783 0.81694 1.28566 0.91580 1.25195 0.99600 0.97995 0.96796 1.69934 1.17041 1.33882 1.34147 0.86206 0.77897 0.85080 0.77033 1.21364 1.21690 1.20457 1.21381 0.92258 0.92620 0.90623 1.22737 0.83159 0.96063 1.01821 1.77503 0.95358 1.09298 1.25532 1.49464 1.07052 1.03189 1.59866 1.22500 0.75058 1.05493 1.03388 0.91677 0.87450 0.91960 0.81788 0.91996 0.85719 0.91756 0.96111 0.93445 0.95898 0.87476 0.91878 0.90025 0.90375 0.88907 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.41 101.05 0.95 1.00 16 2 O -0.29 -2.96 10.57 -19.02 -0.20 -3.16 16 3 C 0.27 3.40 7.78 -16.72 -0.13 3.27 16 4 C -0.23 -3.57 10.60 -39.46 -0.42 -3.99 16 5 C 0.07 1.28 6.88 -82.91 -0.57 0.71 16 6 C 0.59 11.66 7.70 -12.39 -0.10 11.56 16 7 O -0.54 -11.88 16.33 5.31 0.09 -11.79 16 8 N -0.58 -11.65 2.95 -173.37 -0.51 -12.17 16 9 C 0.06 1.10 6.49 -3.60 -0.02 1.08 16 10 C 0.13 2.89 6.67 -3.60 -0.02 2.86 16 11 N -0.59 -15.06 2.96 -171.76 -0.51 -15.57 16 12 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 13 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 14 C 0.00 0.07 5.09 -17.42 -0.09 -0.02 16 15 N -0.91 -26.18 10.88 55.49 0.60 -25.58 16 16 Si 0.91 21.55 29.56 -169.99 -5.03 16.52 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.16 3.89 5.50 -3.36 -0.02 3.88 16 21 C 0.09 1.82 6.60 -3.36 -0.02 1.79 16 22 N -0.25 -3.80 8.88 33.34 0.30 -3.50 16 23 N -0.40 -4.78 4.04 -68.18 -0.28 -5.05 16 24 C 0.08 0.50 9.58 59.85 0.57 1.07 16 25 H 0.06 0.26 5.82 -51.93 -0.30 -0.04 16 26 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 28 H 0.16 2.38 8.06 -52.49 -0.42 1.95 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.13 2.14 3.63 -125.77 -0.46 1.68 16 31 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 2.89 5.90 -51.93 -0.31 2.58 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.08 1.70 7.02 -51.93 -0.36 1.34 16 38 H 0.08 0.40 7.61 -51.93 -0.40 0.00 16 39 H 0.09 0.35 4.66 -51.93 -0.24 0.11 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -33.84 321.57 -6.03 -39.87 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.33 Total: -0.60 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.01 Total: 16.19 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.39 Total: -61.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.11 Total: -14.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.84 -6.03 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311957771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.767 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds