Wall clock time and date at job start Tue Mar 31 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35769 * 117.00004 * 2 1 4 4 C 1.35597 * 126.08193 * 177.93222 * 3 2 1 5 5 C 1.41063 * 107.79430 * 180.15835 * 4 3 2 6 6 C 1.47719 * 125.97808 * 179.82715 * 5 4 3 7 7 O 1.21565 * 120.00354 * 354.21138 * 6 5 4 8 8 N 1.34775 * 119.99788 * 174.21033 * 6 5 4 9 9 C 1.46969 * 120.59696 * 4.70860 * 8 6 5 10 10 C 1.53368 * 108.63252 * 235.20662 * 9 8 6 11 11 N 1.46962 * 108.63623 * 310.56784 * 10 9 8 12 12 C 1.36934 * 120.59778 * 235.21054 * 11 10 9 13 13 H 1.07998 * 120.00211 * 30.67877 * 12 11 10 14 14 C 1.38821 * 120.00162 * 210.95975 * 12 11 10 15 15 N 1.31624 * 119.99484 * 9.33905 * 14 12 11 16 16 Si 1.86794 * 120.00116 * 189.34454 * 14 12 11 17 17 H 1.48501 * 109.47057 * 89.99644 * 16 14 12 18 18 H 1.48499 * 109.46963 * 209.99794 * 16 14 12 19 19 H 1.48497 * 109.47337 * 329.99605 * 16 14 12 20 20 C 1.46969 * 118.81176 * 55.48154 * 11 10 9 21 21 C 1.46970 * 120.59678 * 184.67865 * 8 6 5 22 22 N 1.31863 * 108.03885 * 359.56044 * 5 4 3 23 23 N 1.35841 * 126.08651 * 357.61045 * 3 2 1 24 24 C 1.46506 * 125.94457 * 0.02829 * 23 3 2 25 25 H 1.08991 * 109.47212 * 52.21763 * 1 2 3 26 26 H 1.09000 * 109.47090 * 172.22172 * 1 2 3 27 27 H 1.09000 * 109.46645 * 292.22086 * 1 2 3 28 28 H 1.07999 * 126.10491 * 359.97438 * 4 3 2 29 29 H 1.08995 * 109.61330 * 115.45652 * 9 8 6 30 30 H 1.09001 * 109.60624 * 354.94358 * 9 8 6 31 31 H 1.09005 * 109.61026 * 190.82763 * 10 9 8 32 32 H 1.08999 * 109.61728 * 70.31783 * 10 9 8 33 33 H 0.97003 * 119.99568 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.60841 * 64.26170 * 20 11 10 35 35 H 1.08992 * 109.61565 * 184.77790 * 20 11 10 36 36 H 1.08992 * 109.61602 * 244.54468 * 21 8 6 37 37 H 1.09005 * 109.60571 * 5.05805 * 21 8 6 38 38 H 1.08994 * 109.47396 * 277.12294 * 24 23 3 39 39 H 1.08999 * 109.46652 * 37.12821 * 24 23 3 40 40 H 1.09002 * 109.46180 * 157.11865 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3837 1.4241 0.0395 5 6 3.5976 2.8184 0.0273 6 6 4.9100 3.4954 0.0633 7 8 5.9257 2.8448 0.2140 8 7 4.9812 4.8346 -0.0710 9 6 3.7575 5.6446 -0.1505 10 6 3.8072 6.4827 -1.4340 11 7 5.1100 7.1592 -1.5029 12 6 5.1825 8.5199 -1.6393 13 1 4.4082 9.1464 -1.2218 14 6 6.2481 9.0936 -2.3193 15 7 7.0879 8.3325 -2.9886 16 14 6.4903 10.9454 -2.2842 17 1 7.3520 11.3102 -1.1311 18 1 7.1397 11.3837 -3.5457 19 1 5.1716 11.6146 -2.1479 20 6 6.3338 6.3488 -1.4289 21 6 6.2841 5.5112 -0.1398 22 7 2.4211 3.4114 -0.0278 23 7 1.4314 2.4206 -0.0458 24 6 -0.0145 2.6500 -0.1033 25 1 -0.3633 0.6296 -0.8121 26 1 -0.3633 -1.0182 -0.1391 27 1 -0.3632 0.3886 0.9514 28 1 4.1493 0.6632 0.0770 29 1 3.6985 6.3042 0.7151 30 1 2.8864 4.9898 -0.1748 31 1 3.0097 7.2256 -1.4170 32 1 3.6863 5.8325 -2.3005 33 1 7.8328 8.7334 -3.4634 34 1 6.3887 5.6892 -2.2950 35 1 7.2053 7.0031 -1.4085 36 1 6.4050 6.1613 0.7266 37 1 7.0816 4.7683 -0.1569 38 1 -0.3557 2.5615 -1.1347 39 1 -0.5245 1.9097 0.5130 40 1 -0.2387 3.6495 0.2693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311957771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:35 Heat of formation + Delta-G solvation = 53.237201 kcal Electronic energy + Delta-G solvation = -24149.838724 eV Core-core repulsion = 20582.713569 eV Total energy + Delta-G solvation = -3567.125155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77559 -40.90878 -39.21480 -38.42966 -35.71595 -34.49178 -33.07497 -32.26400 -30.93571 -29.21216 -28.58421 -27.21192 -25.75370 -24.61172 -23.76529 -22.53294 -21.76851 -20.31095 -19.15510 -18.31953 -17.71375 -17.66405 -16.95826 -16.75737 -16.40928 -16.30436 -16.14630 -15.45591 -15.33279 -15.20451 -14.99330 -14.84095 -14.60562 -14.19134 -13.90534 -13.80331 -13.49812 -13.04679 -12.83347 -12.51708 -12.45008 -12.29712 -12.13342 -12.01642 -11.95441 -11.75494 -11.47799 -10.87885 -10.59421 -10.23564 -9.84445 -9.54064 -8.62418 -7.85294 -5.40717 0.17145 1.04911 1.06778 1.49886 1.50953 1.59961 1.74126 2.18892 2.25959 2.52013 3.02658 3.29584 3.62749 3.70977 4.02162 4.08142 4.27189 4.27914 4.29657 4.34838 4.40139 4.44045 4.51576 4.57591 4.66293 4.70629 4.75670 4.79609 4.95435 5.02039 5.04215 5.24411 5.34105 5.55482 5.61528 5.70985 6.18120 6.32202 6.39028 6.45027 7.00267 7.11515 7.78431 8.33814 9.18852 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.003663 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.074947 B = 7641.848274 C = 8283.343066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.298 6.298 3 C 0.288 3.712 4 C -0.261 4.261 5 C 0.050 3.950 6 C 0.585 3.415 7 O -0.570 6.570 8 N -0.585 5.585 9 C 0.071 3.929 10 C 0.134 3.866 11 N -0.610 5.610 12 C -0.263 4.263 13 H 0.075 0.925 14 C -0.051 4.051 15 N -0.939 5.939 16 Si 0.976 3.024 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.266 1.266 20 C 0.169 3.831 21 C 0.099 3.901 22 N -0.260 5.260 23 N -0.384 5.384 24 C 0.059 3.941 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.008 0.992 33 H 0.251 0.749 34 H -0.007 1.007 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.192 -14.433 7.584 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.204 6.204 3 C 0.119 3.881 4 C -0.291 4.291 5 C -0.114 4.114 6 C 0.372 3.628 7 O -0.448 6.448 8 N -0.316 5.316 9 C -0.053 4.053 10 C 0.008 3.992 11 N -0.334 5.334 12 C -0.393 4.393 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.585 5.585 16 Si 0.804 3.196 17 H -0.211 1.211 18 H -0.223 1.223 19 H -0.190 1.190 20 C 0.042 3.958 21 C -0.024 4.024 22 N -0.091 5.091 23 N -0.180 5.180 24 C -0.079 4.079 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.011 0.989 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.238 -13.919 7.518 24.907 hybrid contribution 0.877 0.349 -0.426 1.036 sum -18.361 -13.570 7.093 23.908 Atomic orbital electron populations 1.24116 0.75194 1.07496 1.03201 1.86336 1.24506 1.20133 1.89433 1.19386 0.90524 0.79956 0.98248 1.20356 0.93500 0.94859 1.20406 1.21548 0.92034 0.93681 1.04159 1.17442 0.86784 0.81657 0.76911 1.90717 1.36207 1.65483 1.52439 1.48019 1.09130 1.05377 1.69054 1.23301 0.87712 0.95522 0.98796 1.21386 0.88649 0.94777 0.94381 1.44282 1.00665 1.03169 1.85285 1.19601 1.08871 0.82762 1.28075 0.90762 1.25996 0.99528 1.02330 0.96762 1.70118 1.17547 1.35607 1.35246 0.85138 0.78115 0.79887 0.76477 1.21077 1.22342 1.19024 1.21073 0.91608 0.91901 0.91181 1.22391 0.84323 0.95707 1.00024 1.77143 0.95379 1.10750 1.25838 1.49716 1.08346 1.02240 1.57722 1.23094 0.71826 1.07320 1.05677 0.90100 0.85029 0.90019 0.82245 0.91315 0.83517 0.90321 0.97365 0.93954 0.98930 0.90031 0.91115 0.90089 0.88274 0.85509 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 9.41 113.37 1.07 1.03 16 2 O -0.30 -5.19 10.57 -90.97 -0.96 -6.16 16 3 C 0.29 6.67 7.78 83.46 0.65 7.32 16 4 C -0.26 -7.84 10.60 22.35 0.24 -7.60 16 5 C 0.05 1.72 6.88 42.34 0.29 2.01 16 6 C 0.59 23.73 7.70 86.75 0.67 24.39 16 7 O -0.57 -25.82 16.33 -3.92 -0.06 -25.89 16 8 N -0.59 -23.88 2.95 -820.68 -2.42 -26.30 16 9 C 0.07 2.61 6.49 86.41 0.56 3.17 16 10 C 0.13 5.73 6.67 86.41 0.58 6.30 16 11 N -0.61 -31.47 2.96 -697.34 -2.07 -33.54 16 12 C -0.26 -14.38 9.59 84.04 0.81 -13.57 16 13 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 14 C -0.05 -2.85 5.09 84.86 0.43 -2.41 16 15 N -0.94 -55.94 10.88 21.66 0.24 -55.70 16 16 Si 0.98 44.57 29.56 68.60 2.03 46.60 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 C 0.17 8.71 5.50 86.57 0.48 9.19 16 21 C 0.10 4.35 6.60 86.57 0.57 4.92 16 22 N -0.26 -7.55 8.88 -48.42 -0.43 -7.98 16 23 N -0.38 -8.03 4.04 -480.56 -1.94 -9.97 16 24 C 0.06 0.51 9.58 127.77 1.22 1.73 16 25 H 0.08 0.24 5.82 -2.39 -0.01 0.23 16 26 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.08 0.18 6.57 -2.39 -0.02 0.17 16 28 H 0.16 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.15 4.82 3.63 -98.98 -0.36 4.46 16 31 H 0.08 3.09 7.93 -2.38 -0.02 3.07 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 4.62 5.90 -2.39 -0.01 4.61 16 36 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.08 3.53 7.02 -2.38 -0.02 3.51 16 38 H 0.10 0.54 7.61 -2.39 -0.02 0.52 16 39 H 0.13 0.27 4.66 -2.39 -0.01 0.26 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.59 321.57 2.66 -72.92 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.72 Total: 9.54 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: 7.56 Total: 36.47 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -6.62 Total: -133.49 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.03 Total: -32.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.59 2.66 -72.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311957771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.161 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds