Wall clock time and date at job start Tue Mar 31 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36961 * 120.00318 * 2 1 4 4 H 1.07999 * 120.00094 * 173.51626 * 3 2 1 5 5 C 1.38992 * 119.99544 * 353.51827 * 3 2 1 6 6 N 1.31397 * 119.99949 * 5.11489 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 185.11556 * 5 3 2 8 8 H 1.48502 * 109.47300 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46795 * 119.99760 * 7 5 3 10 10 H 1.48497 * 109.47080 * 239.99697 * 7 5 3 11 11 C 1.34781 * 119.99773 * 179.97438 * 2 1 3 12 12 O 1.21625 * 119.99957 * 5.75161 * 11 2 1 13 13 C 1.47441 * 119.99680 * 185.74441 * 11 2 1 14 14 C 1.36667 * 125.77744 * 174.18395 * 13 11 2 15 15 N 1.34829 * 106.82980 * 179.74011 * 14 13 11 16 16 C 1.46504 * 126.59591 * 180.26387 * 15 14 13 17 17 C 1.50701 * 109.47169 * 125.00147 * 16 15 14 18 18 O 1.20755 * 120.00243 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46768 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47055 * 299.99827 * 19 17 16 22 22 C 1.53003 * 109.47248 * 59.99823 * 19 17 16 23 23 N 1.40210 * 106.81552 * 0.26518 * 15 14 13 24 24 N 1.28756 * 108.38297 * 359.97438 * 23 15 14 25 25 H 1.09003 * 109.47321 * 184.64612 * 1 2 3 26 26 H 1.09003 * 109.46994 * 304.64938 * 1 2 3 27 27 H 1.08997 * 109.47075 * 64.64937 * 1 2 3 28 28 H 0.97000 * 119.99707 * 179.97438 * 6 5 3 29 29 H 1.08004 * 126.58309 * 0.02562 * 14 13 11 30 30 H 1.09000 * 109.46808 * 245.00064 * 16 15 14 31 31 H 1.09001 * 109.46608 * 4.99854 * 16 15 14 32 32 H 1.09000 * 109.47163 * 60.00159 * 20 19 17 33 33 H 1.09006 * 109.47055 * 179.97438 * 20 19 17 34 34 H 1.09000 * 109.47142 * 299.99710 * 20 19 17 35 35 H 1.08999 * 109.47238 * 60.00151 * 21 19 17 36 36 H 1.08996 * 109.47022 * 180.02562 * 21 19 17 37 37 H 1.09000 * 109.47181 * 300.00028 * 21 19 17 38 38 H 1.08997 * 109.46871 * 59.99957 * 22 19 17 39 39 H 1.08996 * 109.46986 * 179.97438 * 22 19 17 40 40 H 1.08999 * 109.47128 * 299.99899 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.2246 1.1890 0.1056 5 6 1.4615 2.3859 -0.1359 6 7 0.1478 2.3902 -0.1633 7 14 2.4041 3.9922 -0.2796 8 1 3.8624 3.7173 -0.2224 9 1 2.0744 4.6457 -1.5717 10 1 2.0249 4.8905 0.8404 11 6 2.1388 -1.1673 0.0005 12 8 1.5352 -2.2179 -0.1046 13 6 3.6077 -1.1704 0.1283 14 6 4.3964 -2.2794 0.2547 15 7 5.6702 -1.8452 0.3369 16 6 6.8688 -2.6759 0.4766 17 6 7.8383 -2.3491 -0.6298 18 8 7.5570 -1.5093 -1.4507 19 6 9.1585 -3.0711 -0.7125 20 6 9.9470 -2.5557 -1.9181 21 6 9.9589 -2.8187 0.5668 22 6 8.9097 -4.5725 -0.8705 23 7 5.6273 -0.4457 0.2629 24 7 4.3976 -0.0829 0.1436 25 1 -0.3634 -1.0243 0.0832 26 1 -0.3633 0.5843 0.8454 27 1 -0.3633 0.4400 -0.9287 28 1 -0.3325 3.2276 -0.2577 29 1 4.0635 -3.3066 0.2789 30 1 7.3375 -2.4781 1.4406 31 1 6.5905 -3.7281 0.4170 32 1 10.1243 -1.4860 -1.8059 33 1 10.9022 -3.0776 -1.9777 34 1 9.3767 -2.7359 -2.8293 35 1 9.3969 -3.1862 1.4254 36 1 10.9139 -3.3405 0.5068 37 1 10.1361 -1.7491 0.6794 38 1 8.3395 -4.7523 -1.7819 39 1 9.8646 -5.0946 -0.9307 40 1 8.3478 -4.9400 -0.0119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330910753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:49 Heat of formation + Delta-G solvation = 26.824672 kcal Electronic energy + Delta-G solvation = -23775.263755 eV Core-core repulsion = 20206.993267 eV Total energy + Delta-G solvation = -3568.270488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08997 -41.10888 -40.02337 -36.81138 -36.80434 -35.50904 -33.37272 -31.85759 -30.26826 -28.36555 -28.18135 -27.80801 -26.60171 -24.68005 -23.65722 -22.69568 -21.16519 -19.94590 -19.36151 -18.11633 -17.53455 -17.40822 -16.60577 -16.35282 -16.19671 -16.00473 -15.96713 -15.52735 -15.16859 -14.82507 -14.67557 -14.55333 -13.70864 -13.54260 -13.43421 -13.39009 -13.32369 -13.04120 -13.02637 -12.77471 -12.70162 -12.55941 -12.53078 -12.06502 -11.89875 -11.84191 -11.55630 -11.17329 -10.99456 -10.55528 -10.49577 -10.13658 -9.88374 -8.23511 -5.81548 0.27803 0.82104 0.88107 1.16592 1.41851 1.44250 1.59289 2.29467 2.48078 2.64202 2.87782 3.23405 3.52453 3.58639 3.69658 3.92409 3.92960 4.09795 4.12248 4.24604 4.37082 4.50605 4.64127 4.71334 4.74958 4.86991 4.96835 4.98136 4.99785 5.04068 5.16627 5.23633 5.32918 5.40273 5.41028 5.54798 5.70709 5.86448 6.39610 6.61783 7.00662 7.22238 7.60051 7.90368 8.71448 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.003978 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.853055 B = 7036.502734 C = 7952.506904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.437 5.437 3 C -0.356 4.356 4 H 0.155 0.845 5 C -0.014 4.014 6 N -0.902 5.902 7 Si 0.988 3.012 8 H -0.267 1.267 9 H -0.276 1.276 10 H -0.270 1.270 11 C 0.502 3.498 12 O -0.636 6.636 13 C -0.089 4.089 14 C 0.092 3.908 15 N -0.349 5.349 16 C 0.057 3.943 17 C 0.348 3.652 18 O -0.474 6.474 19 C -0.100 4.100 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.142 4.142 23 N -0.095 5.095 24 N -0.226 5.226 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.269 0.731 29 H 0.240 0.760 30 H 0.162 0.838 31 H 0.185 0.815 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.210 -15.056 3.315 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.151 5.151 3 C -0.485 4.485 4 H 0.171 0.829 5 C -0.215 4.215 6 N -0.543 5.543 7 Si 0.812 3.188 8 H -0.192 1.192 9 H -0.201 1.201 10 H -0.195 1.195 11 C 0.291 3.709 12 O -0.527 6.527 13 C -0.228 4.228 14 C -0.065 4.065 15 N -0.136 5.136 16 C -0.062 4.062 17 C 0.222 3.778 18 O -0.346 6.346 19 C -0.101 4.101 20 C -0.195 4.195 21 C -0.199 4.199 22 C -0.199 4.199 23 N -0.074 5.074 24 N -0.098 5.098 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.179 0.821 31 H 0.202 0.798 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.466 -13.651 2.820 25.595 hybrid contribution -0.759 0.446 -0.358 0.950 sum 20.707 -13.205 2.462 24.682 Atomic orbital electron populations 1.21445 0.79407 0.97482 1.02505 1.43964 1.06799 1.05647 1.58739 1.21834 0.96508 0.82735 1.47410 0.82921 1.26252 0.96547 1.02746 0.95922 1.70346 1.07054 1.28001 1.48895 0.84921 0.78626 0.77193 0.78073 1.19154 1.20114 1.19537 1.16913 0.85091 0.83601 0.85306 1.90557 1.69268 1.31627 1.61223 1.21516 0.95632 0.89857 1.15785 1.23633 0.82752 1.01714 0.98393 1.50272 1.06959 1.07193 1.49153 1.23164 0.82397 0.97668 1.03012 1.25481 0.89291 0.80173 0.82854 1.90544 1.76733 1.28423 1.38911 1.21182 0.91611 0.98134 0.99203 1.21762 1.00544 1.00828 0.96336 1.21942 1.01206 1.02242 0.94480 1.21955 1.04419 0.90207 1.03289 1.81894 1.13410 0.89200 1.22866 1.74611 0.97463 1.26011 1.11692 0.94028 0.91977 0.92997 0.92111 0.74353 0.82076 0.79764 0.94033 0.89288 0.93827 0.89290 0.89173 0.93437 0.93027 0.89260 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.33 8.85 127.77 1.13 8.47 16 2 N -0.44 -25.08 3.02 -662.60 -2.00 -27.08 16 3 C -0.36 -20.62 9.34 84.07 0.79 -19.84 16 4 H 0.15 8.83 4.02 -39.28 -0.16 8.68 16 5 C -0.01 -0.80 5.46 84.94 0.46 -0.33 16 6 N -0.90 -50.65 9.45 21.67 0.20 -50.45 16 7 Si 0.99 45.16 29.56 68.60 2.03 47.19 16 8 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 C 0.50 27.03 7.62 86.67 0.66 27.69 16 12 O -0.64 -34.82 16.23 -4.11 -0.07 -34.88 16 13 C -0.09 -4.13 6.74 40.81 0.28 -3.86 16 14 C 0.09 3.03 11.28 83.86 0.95 3.97 16 15 N -0.35 -10.41 3.41 -350.74 -1.20 -11.60 16 16 C 0.06 0.85 6.29 85.63 0.54 1.39 16 17 C 0.35 6.81 6.00 29.10 0.17 6.98 16 18 O -0.47 -15.39 15.36 -1.43 -0.02 -15.41 16 19 C -0.10 -1.11 0.87 -52.93 -0.05 -1.16 16 20 C -0.14 -2.05 7.76 71.98 0.56 -1.49 16 21 C -0.14 -0.93 8.26 71.98 0.59 -0.33 16 22 C -0.14 -0.75 8.25 71.98 0.59 -0.15 16 23 N -0.09 -3.94 12.89 37.02 0.48 -3.46 16 24 N -0.23 -11.02 8.72 -50.00 -0.44 -11.46 16 25 H 0.04 2.15 6.94 -2.39 -0.02 2.14 16 26 H 0.06 3.44 7.00 -2.39 -0.02 3.42 16 27 H 0.05 2.91 7.10 -2.39 -0.02 2.90 16 28 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.24 5.54 8.06 -2.91 -0.02 5.52 16 30 H 0.16 1.35 7.38 -2.39 -0.02 1.33 16 31 H 0.19 0.81 7.32 -2.39 -0.02 0.79 16 32 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 35 H 0.09 0.17 7.28 -2.39 -0.02 0.15 16 36 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.09 0.01 7.28 -2.39 -0.02 0.00 16 Total: -1.00 -84.60 334.29 6.58 -78.02 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.91 Total: 7.80 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.68 Total: 21.33 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -2.95 Total: -104.05 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.09 Total: -50.29 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -84.60 6.58 -78.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330910753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.845 kcal (2) G-P(sol) polarization free energy of solvation -84.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds