Wall clock time and date at job start Tue Mar 31 2020 03:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.47224 * 2 1
4 4 H 1.08988 * 109.47344 * 54.99448 * 3 2 1
5 5 C 1.50702 * 109.47065 * 174.99821 * 3 2 1
6 6 H 1.07997 * 119.99729 * 119.99479 * 5 3 2
7 7 C 1.37872 * 120.00031 * 299.99770 * 5 3 2
8 8 N 1.31516 * 120.00009 * 179.97438 * 7 5 3
9 9 Si 1.86798 * 119.99873 * 359.97438 * 7 5 3
10 10 H 1.48504 * 109.46980 * 90.00314 * 9 7 5
11 11 H 1.48501 * 109.47206 * 209.99795 * 9 7 5
12 12 H 1.48499 * 109.47178 * 330.00159 * 9 7 5
13 13 N 1.46507 * 109.46551 * 294.99613 * 3 2 1
14 14 C 1.34768 * 120.00145 * 85.00629 * 13 3 2
15 15 O 1.21678 * 119.99698 * 359.97438 * 14 13 3
16 16 C 1.46910 * 120.00226 * 179.97438 * 14 13 3
17 17 C 1.38843 * 121.22975 * 359.97438 * 16 14 13
18 18 N 1.33056 * 119.82895 * 179.72063 * 17 16 14
19 19 C 1.30521 * 122.86060 * 0.25494 * 18 17 16
20 20 C 1.50700 * 118.64339 * 179.97438 * 19 18 17
21 21 O 1.42902 * 109.46961 * 180.02562 * 20 19 18
22 22 C 1.42894 * 114.00169 * 180.02562 * 21 20 19
23 23 N 1.34632 * 122.70364 * 0.02562 * 19 18 17
24 24 H 0.97003 * 120.18433 * 179.97438 * 23 19 18
25 25 C 1.38240 * 119.62793 * 359.97081 * 23 19 18
26 26 N 1.31025 * 121.27993 * 180.02562 * 25 23 19
27 27 H 1.08999 * 109.47207 * 300.01054 * 1 2 3
28 28 H 1.09002 * 109.46478 * 60.00324 * 1 2 3
29 29 H 1.08993 * 109.47092 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47501 * 239.99666 * 2 1 3
31 31 H 1.09002 * 109.46478 * 119.99676 * 2 1 3
32 32 H 0.97000 * 119.99866 * 179.97438 * 8 7 5
33 33 H 0.96999 * 119.99599 * 264.99872 * 13 3 2
34 34 H 1.08002 * 120.08782 * 0.02562 * 17 16 14
35 35 H 1.08995 * 109.47777 * 300.00345 * 20 19 18
36 36 H 1.09002 * 109.47111 * 60.00317 * 20 19 18
37 37 H 1.08999 * 109.47364 * 179.97438 * 22 21 20
38 38 H 1.08997 * 109.47316 * 300.00468 * 22 21 20
39 39 H 1.09005 * 109.47442 * 59.99904 * 22 21 20
40 40 H 0.96998 * 120.00611 * 359.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6054 1.9816 0.8416
5 6 3.5420 1.4443 0.1239
6 1 4.1473 1.8887 -0.6523
7 6 4.1433 0.8784 1.2280
8 7 5.4540 0.8795 1.3359
9 14 3.0963 0.1102 2.5708
10 1 2.8744 -1.3259 2.2647
11 1 3.7940 0.2361 3.8756
12 1 1.7881 0.8096 2.6394
13 7 1.6525 2.0974 -1.2519
14 6 0.4353 2.6643 -1.3672
15 8 -0.3419 2.6319 -0.4316
16 6 0.0469 3.3215 -2.6224
17 6 0.9137 3.3739 -3.7057
18 7 0.5310 3.9714 -4.8313
19 6 -0.6408 4.5283 -4.9744
20 6 -0.9750 5.1796 -6.2916
21 8 -2.2954 5.7229 -6.2329
22 6 -2.7134 6.3663 -7.4383
23 7 -1.5626 4.5457 -3.9933
24 1 -2.4223 4.9705 -4.1394
25 6 -1.2771 3.9546 -2.7767
26 7 -2.1504 3.9522 -1.7999
27 1 -0.3633 0.5140 0.8899
28 1 -0.3632 0.5138 -0.8901
29 1 -0.3633 -1.0276 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 5.8770 0.4817 2.1129
33 1 2.2721 2.1230 -1.9979
34 1 1.8943 2.9265 -3.6367
35 1 -0.2622 5.9792 -6.4930
36 1 -0.9224 4.4370 -7.0878
37 1 -3.7254 6.7512 -7.3128
38 1 -2.0363 7.1902 -7.6641
39 1 -2.6974 5.6480 -8.2581
40 1 -3.0167 4.3709 -1.9227
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356080826.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:22
Heat of formation + Delta-G solvation = -5.126091 kcal
Electronic energy + Delta-G solvation = -23622.408773 eV
Core-core repulsion = 20052.752796 eV
Total energy + Delta-G solvation = -3569.655978 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.12818 -38.94257 -38.28860 -35.66432 -35.04495 -33.61958 -32.24859 -31.46318
-30.24671 -28.80251 -27.27795 -26.55698 -24.16998 -23.01074 -22.32518 -21.05610
-19.67474 -18.70600 -18.31667 -17.40149 -16.81955 -16.77908 -16.44373 -15.92856
-15.46383 -15.30216 -15.09433 -14.35177 -14.06209 -13.62251 -13.24751 -13.11743
-12.85954 -12.71213 -12.22682 -12.15993 -11.81665 -11.78404 -11.65539 -10.98363
-10.79939 -10.63306 -10.52114 -10.34123 -10.24373 -9.81389 -9.72806 -9.40025
-9.11976 -8.77574 -8.66001 -7.94715 -7.68084 -6.13351 -4.14955 0.36889
1.88476 2.47868 2.64299 3.13293 3.31224 3.42768 3.50175 3.90988
4.11724 4.14195 4.34254 4.40120 4.45594 4.63857 4.68277 4.74803
4.79428 5.07650 5.21073 5.28211 5.41108 5.72579 5.91877 6.11059
6.14594 6.15794 6.30435 6.35174 6.79285 6.84277 6.87455 6.98441
7.12628 7.40671 7.44854 7.64250 7.68151 8.25566 8.32740 8.66435
8.85713 9.17578 9.48880 10.98722
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.032139 B = 0.003497 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 871.009633 B = 8005.202881 C = 8543.483731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.138 4.138
3 C 0.246 3.754
4 H 0.050 0.950
5 C -0.532 4.532
6 H 0.080 0.920
7 C 0.078 3.922
8 N -0.894 5.894
9 Si 0.882 3.118
10 H -0.276 1.276
11 H -0.296 1.296
12 H -0.259 1.259
13 N -0.703 5.703
14 C 0.556 3.444
15 O -0.509 6.509
16 C -0.207 4.207
17 C 0.168 3.832
18 N -0.557 5.557
19 C 0.414 3.586
20 C 0.106 3.894
21 O -0.403 6.403
22 C 0.037 3.963
23 N -0.644 5.644
24 H 0.420 0.580
25 C 0.421 3.579
26 N -0.687 5.687
27 H 0.053 0.947
28 H 0.053 0.947
29 H 0.029 0.971
30 H 0.058 0.942
31 H 0.053 0.947
32 H 0.266 0.734
33 H 0.389 0.611
34 H 0.175 0.825
35 H 0.098 0.902
36 H 0.098 0.902
37 H 0.093 0.907
38 H 0.050 0.950
39 H 0.050 0.950
40 H 0.326 0.674
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.241 9.408 -19.994 26.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.176 4.176
3 C 0.142 3.858
4 H 0.068 0.932
5 C -0.570 4.570
6 H 0.098 0.902
7 C -0.125 4.125
8 N -0.531 5.531
9 Si 0.712 3.288
10 H -0.203 1.203
11 H -0.223 1.223
12 H -0.183 1.183
13 N -0.353 5.353
14 C 0.340 3.660
15 O -0.385 6.385
16 C -0.219 4.219
17 C 0.029 3.971
18 N -0.282 5.282
19 C 0.146 3.854
20 C 0.027 3.973
21 O -0.321 6.321
22 C -0.059 4.059
23 N -0.273 5.273
24 H 0.260 0.740
25 C 0.146 3.854
26 N -0.315 5.315
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.048 0.952
30 H 0.076 0.924
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.223 0.777
34 H 0.192 0.808
35 H 0.116 0.884
36 H 0.115 0.885
37 H 0.111 0.889
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -14.097 8.818 -18.450 24.837
hybrid contribution -1.293 0.222 -0.112 1.316
sum -15.390 9.040 -18.562 25.751
Atomic orbital electron populations
1.21870 0.96825 0.98824 1.02525 1.22286 0.94436 0.99982 1.00926
1.19113 0.95431 0.88404 0.82806 0.93224 1.21067 0.88677 1.39503
1.07753 0.90177 1.24820 0.94839 0.95187 0.97666 1.69872 1.08681
1.44769 1.29818 0.86914 0.81105 0.79959 0.80835 1.20295 1.22321
1.18310 1.46036 1.14529 1.56847 1.17912 1.17255 0.82801 0.79583
0.86337 1.90844 1.50680 1.58007 1.38921 1.21693 0.92631 1.09214
0.98383 1.22997 0.98467 0.89843 0.85786 1.67432 1.14369 1.19169
1.27226 1.22434 0.85262 0.88487 0.89185 1.21379 0.85377 0.98652
0.91880 1.87654 1.30766 1.75658 1.38061 1.22824 1.00938 0.96425
0.85724 1.44607 1.18612 1.51223 1.12863 0.74039 1.21171 0.94386
0.90032 0.79784 1.70758 1.06930 1.28402 1.25437 0.92834 0.92758
0.95233 0.92365 0.92924 0.92384 0.77744 0.80782 0.88430 0.88455
0.88879 0.93153 0.93181 0.85748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16
2 C -0.14 -3.17 5.11 -26.73 -0.14 -3.31 16
3 C 0.25 6.00 1.83 -69.08 -0.13 5.88 16
4 H 0.05 1.35 6.63 -51.94 -0.34 1.01 16
5 C -0.53 -14.55 9.31 -34.44 -0.32 -14.87 16
6 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16
7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16
8 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16
9 Si 0.88 22.31 24.41 -169.99 -4.15 18.16 16
10 H -0.28 -6.77 6.83 56.52 0.39 -6.38 16
11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16
12 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16
13 N -0.70 -14.47 4.98 -56.17 -0.28 -14.75 16
14 C 0.56 11.47 6.33 -12.75 -0.08 11.39 16
15 O -0.51 -12.29 12.60 5.21 0.07 -12.23 16
16 C -0.21 -3.46 6.09 -102.36 -0.62 -4.09 16
17 C 0.17 2.27 10.78 -16.80 -0.18 2.09 16
18 N -0.56 -6.53 10.16 -10.14 -0.10 -6.63 16
19 C 0.41 4.09 7.68 -155.77 -1.20 2.89 16
20 C 0.11 0.60 6.45 36.01 0.23 0.83 16
21 O -0.40 -2.28 9.29 -35.23 -0.33 -2.60 16
22 C 0.04 0.10 11.01 101.05 1.11 1.21 16
23 N -0.64 -7.03 5.32 -8.01 -0.04 -7.07 16
24 H 0.42 3.63 7.44 -40.82 -0.30 3.33 16
25 C 0.42 6.53 8.03 -153.45 -1.23 5.30 16
26 N -0.69 -11.85 12.50 32.62 0.41 -11.44 16
27 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16
28 H 0.05 1.17 5.64 -51.93 -0.29 0.88 16
29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
31 H 0.05 1.27 3.22 -51.93 -0.17 1.10 16
32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
33 H 0.39 6.90 6.66 -40.82 -0.27 6.63 16
34 H 0.18 2.03 6.49 -52.49 -0.34 1.69 16
35 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16
36 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16
37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16
38 H 0.05 0.10 8.14 -51.93 -0.42 -0.33 16
39 H 0.05 0.09 8.14 -51.93 -0.42 -0.33 16
40 H 0.33 4.56 8.90 -40.82 -0.36 4.20 16
LS Contribution 326.36 15.07 4.92 4.92
Total: -1.00 -35.70 326.36 -6.12 -41.83
By element:
Atomic # 1 Polarization: 14.20 SS G_CDS: -5.05 Total: 9.15 kcal
Atomic # 6 Polarization: 9.03 SS G_CDS: -2.33 Total: 6.70 kcal
Atomic # 7 Polarization: -66.68 SS G_CDS: 0.76 Total: -65.92 kcal
Atomic # 8 Polarization: -14.57 SS G_CDS: -0.26 Total: -14.83 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -4.15 Total: 18.16 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -35.70 -6.12 -41.83 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356080826.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.700 kcal
(2) G-P(sol) polarization free energy of solvation -35.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.126 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds