Wall clock time and date at job start Tue Mar 31 2020 03:23:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.47224 * 2 1
4 4 H 1.08988 * 109.47344 * 54.99448 * 3 2 1
5 5 C 1.50702 * 109.47065 * 174.99821 * 3 2 1
6 6 H 1.07997 * 119.99729 * 119.99479 * 5 3 2
7 7 C 1.37872 * 120.00031 * 299.99770 * 5 3 2
8 8 N 1.31516 * 120.00009 * 179.97438 * 7 5 3
9 9 Si 1.86798 * 119.99873 * 359.97438 * 7 5 3
10 10 H 1.48504 * 109.46980 * 90.00314 * 9 7 5
11 11 H 1.48501 * 109.47206 * 209.99795 * 9 7 5
12 12 H 1.48499 * 109.47178 * 330.00159 * 9 7 5
13 13 N 1.46507 * 109.46551 * 294.99613 * 3 2 1
14 14 C 1.34768 * 120.00145 * 85.00629 * 13 3 2
15 15 O 1.21678 * 119.99698 * 359.97438 * 14 13 3
16 16 C 1.46910 * 120.00226 * 179.97438 * 14 13 3
17 17 C 1.38843 * 121.22975 * 359.97438 * 16 14 13
18 18 N 1.33056 * 119.82895 * 179.72063 * 17 16 14
19 19 C 1.30521 * 122.86060 * 0.25494 * 18 17 16
20 20 C 1.50700 * 118.64339 * 179.97438 * 19 18 17
21 21 O 1.42902 * 109.46961 * 180.02562 * 20 19 18
22 22 C 1.42894 * 114.00169 * 180.02562 * 21 20 19
23 23 N 1.34632 * 122.70364 * 0.02562 * 19 18 17
24 24 H 0.97003 * 120.18433 * 179.97438 * 23 19 18
25 25 C 1.38240 * 119.62793 * 359.97081 * 23 19 18
26 26 N 1.31025 * 121.27993 * 180.02562 * 25 23 19
27 27 H 1.08999 * 109.47207 * 300.01054 * 1 2 3
28 28 H 1.09002 * 109.46478 * 60.00324 * 1 2 3
29 29 H 1.08993 * 109.47092 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47501 * 239.99666 * 2 1 3
31 31 H 1.09002 * 109.46478 * 119.99676 * 2 1 3
32 32 H 0.97000 * 119.99866 * 179.97438 * 8 7 5
33 33 H 0.96999 * 119.99599 * 264.99872 * 13 3 2
34 34 H 1.08002 * 120.08782 * 0.02562 * 17 16 14
35 35 H 1.08995 * 109.47777 * 300.00345 * 20 19 18
36 36 H 1.09002 * 109.47111 * 60.00317 * 20 19 18
37 37 H 1.08999 * 109.47364 * 179.97438 * 22 21 20
38 38 H 1.08997 * 109.47316 * 300.00468 * 22 21 20
39 39 H 1.09005 * 109.47442 * 59.99904 * 22 21 20
40 40 H 0.96998 * 120.00611 * 359.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6054 1.9816 0.8416
5 6 3.5420 1.4443 0.1239
6 1 4.1473 1.8887 -0.6523
7 6 4.1433 0.8784 1.2280
8 7 5.4540 0.8795 1.3359
9 14 3.0963 0.1102 2.5708
10 1 2.8744 -1.3259 2.2647
11 1 3.7940 0.2361 3.8756
12 1 1.7881 0.8096 2.6394
13 7 1.6525 2.0974 -1.2519
14 6 0.4353 2.6643 -1.3672
15 8 -0.3419 2.6319 -0.4316
16 6 0.0469 3.3215 -2.6224
17 6 0.9137 3.3739 -3.7057
18 7 0.5310 3.9714 -4.8313
19 6 -0.6408 4.5283 -4.9744
20 6 -0.9750 5.1796 -6.2916
21 8 -2.2954 5.7229 -6.2329
22 6 -2.7134 6.3663 -7.4383
23 7 -1.5626 4.5457 -3.9933
24 1 -2.4223 4.9705 -4.1394
25 6 -1.2771 3.9546 -2.7767
26 7 -2.1504 3.9522 -1.7999
27 1 -0.3633 0.5140 0.8899
28 1 -0.3632 0.5138 -0.8901
29 1 -0.3633 -1.0276 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 5.8770 0.4817 2.1129
33 1 2.2721 2.1230 -1.9979
34 1 1.8943 2.9265 -3.6367
35 1 -0.2622 5.9792 -6.4930
36 1 -0.9224 4.4370 -7.0878
37 1 -3.7254 6.7512 -7.3128
38 1 -2.0363 7.1902 -7.6641
39 1 -2.6974 5.6480 -8.2581
40 1 -3.0167 4.3709 -1.9227
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356080826.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:23:21
Heat of formation + Delta-G solvation = -33.699591 kcal
Electronic energy + Delta-G solvation = -23623.647813 eV
Core-core repulsion = 20052.752796 eV
Total energy + Delta-G solvation = -3570.895017 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.14265 -40.41517 -38.84976 -37.04787 -36.55535 -34.75569 -34.27109 -33.12929
-31.31859 -29.80708 -28.92877 -27.06770 -25.09569 -24.72884 -23.75381 -22.46364
-21.39144 -20.06253 -19.33896 -18.78658 -17.95159 -17.61924 -17.30795 -17.17869
-16.81842 -16.41374 -16.18454 -15.87040 -15.68556 -14.97617 -14.76189 -14.41654
-14.03164 -13.73489 -13.62493 -13.53852 -13.47131 -12.92423 -12.75955 -12.73359
-12.40143 -12.37354 -11.82514 -11.53876 -11.45908 -11.30887 -11.17970 -10.94055
-10.81400 -10.79362 -10.25497 -9.67442 -8.87747 -8.34402 -6.38478 -0.66685
0.81022 1.28811 1.37233 1.48406 1.53282 1.90512 2.08202 2.29627
2.55582 2.76883 3.02103 3.20568 3.41523 3.60930 3.98853 4.19947
4.28321 4.29474 4.36108 4.43990 4.49513 4.56267 4.64052 4.68160
4.78119 4.93519 4.95645 5.03150 5.11644 5.17797 5.29890 5.46972
5.56850 5.75607 5.87254 6.01939 6.22314 6.63257 6.68486 6.99957
7.24410 7.27202 7.64370 8.80608
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.032139 B = 0.003497 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 871.009633 B = 8005.202881 C = 8543.483731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.135 4.135
3 C 0.254 3.746
4 H 0.018 0.982
5 C -0.528 4.528
6 H 0.062 0.938
7 C 0.032 3.968
8 N -0.933 5.933
9 Si 0.932 3.068
10 H -0.259 1.259
11 H -0.294 1.294
12 H -0.265 1.265
13 N -0.701 5.701
14 C 0.558 3.442
15 O -0.553 6.553
16 C -0.265 4.265
17 C 0.212 3.788
18 N -0.567 5.567
19 C 0.431 3.569
20 C 0.108 3.892
21 O -0.420 6.420
22 C 0.031 3.969
23 N -0.629 5.629
24 H 0.432 0.568
25 C 0.426 3.574
26 N -0.734 5.734
27 H 0.032 0.968
28 H 0.050 0.950
29 H 0.056 0.944
30 H 0.072 0.928
31 H 0.043 0.957
32 H 0.269 0.731
33 H 0.402 0.598
34 H 0.191 0.809
35 H 0.122 0.878
36 H 0.123 0.877
37 H 0.099 0.901
38 H 0.061 0.939
39 H 0.062 0.938
40 H 0.336 0.664
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.285 9.740 -22.872 29.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.173 4.173
3 C 0.149 3.851
4 H 0.036 0.964
5 C -0.566 4.566
6 H 0.080 0.920
7 C -0.168 4.168
8 N -0.572 5.572
9 Si 0.760 3.240
10 H -0.184 1.184
11 H -0.221 1.221
12 H -0.190 1.190
13 N -0.353 5.353
14 C 0.346 3.654
15 O -0.432 6.432
16 C -0.278 4.278
17 C 0.070 3.930
18 N -0.292 5.292
19 C 0.165 3.835
20 C 0.030 3.970
21 O -0.339 6.339
22 C -0.064 4.064
23 N -0.257 5.257
24 H 0.275 0.725
25 C 0.151 3.849
26 N -0.364 5.364
27 H 0.051 0.949
28 H 0.069 0.931
29 H 0.075 0.925
30 H 0.090 0.910
31 H 0.061 0.939
32 H 0.079 0.921
33 H 0.238 0.762
34 H 0.208 0.792
35 H 0.139 0.861
36 H 0.141 0.859
37 H 0.117 0.883
38 H 0.080 0.920
39 H 0.080 0.920
40 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -15.185 9.188 -21.411 27.811
hybrid contribution -0.985 0.290 0.512 1.147
sum -16.170 9.478 -20.900 28.073
Atomic orbital electron populations
1.21723 0.95569 1.00152 1.01362 1.22200 0.95455 0.98629 1.01062
1.18731 0.93236 0.89455 0.83693 0.96448 1.21285 0.90143 1.38236
1.06974 0.92033 1.25472 0.95650 0.95951 0.99680 1.69966 1.10074
1.46341 1.30816 0.86102 0.79289 0.80053 0.78570 1.18441 1.22128
1.18980 1.45804 1.15314 1.57097 1.17056 1.17711 0.81830 0.78637
0.87242 1.90808 1.51787 1.59771 1.40845 1.21234 0.94716 1.13873
0.97979 1.23287 0.98046 0.86727 0.84952 1.67622 1.15295 1.20304
1.26023 1.23452 0.84077 0.85864 0.90070 1.21603 0.86241 0.99770
0.89379 1.87630 1.30525 1.76064 1.39723 1.23018 1.01502 0.96938
0.84953 1.44517 1.19435 1.49996 1.11734 0.72521 1.20968 0.93687
0.89504 0.80761 1.70746 1.08102 1.30358 1.27202 0.94880 0.93123
0.92469 0.90975 0.93856 0.92137 0.76208 0.79230 0.86050 0.85912
0.88289 0.92048 0.91979 0.84647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.57 8.51 71.98 0.61 -4.96 16
2 C -0.14 -6.15 5.11 30.60 0.16 -5.99 16
3 C 0.25 12.57 1.83 44.25 0.08 12.65 16
4 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16
5 C -0.53 -29.35 9.31 25.60 0.24 -29.11 16
6 H 0.06 3.57 7.98 -2.91 -0.02 3.55 16
7 C 0.03 1.85 5.45 84.65 0.46 2.31 16
8 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16
9 Si 0.93 46.39 24.41 68.60 1.67 48.07 16
10 H -0.26 -12.08 6.83 99.48 0.68 -11.40 16
11 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16
12 H -0.26 -13.38 6.53 99.48 0.65 -12.73 16
13 N -0.70 -29.15 4.98 -449.85 -2.24 -31.39 16
14 C 0.56 23.43 6.33 86.52 0.55 23.98 16
15 O -0.55 -27.64 12.60 -4.28 -0.05 -27.69 16
16 C -0.27 -8.76 6.09 -18.40 -0.11 -8.87 16
17 C 0.21 5.32 10.78 84.65 0.91 6.23 16
18 N -0.57 -11.56 10.16 -186.00 -1.89 -13.45 16
19 C 0.43 7.14 7.68 138.25 1.06 8.20 16
20 C 0.11 0.77 6.45 71.24 0.46 1.23 16
21 O -0.42 -3.23 9.29 -148.98 -1.38 -4.61 16
22 C 0.03 0.06 11.01 113.37 1.25 1.31 16
23 N -0.63 -12.45 5.32 -179.25 -0.95 -13.40 16
24 H 0.43 6.56 7.44 -92.71 -0.69 5.87 16
25 C 0.43 12.99 8.03 135.97 1.09 14.08 16
26 N -0.73 -25.71 12.50 -50.72 -0.63 -26.34 16
27 H 0.03 1.51 7.84 -2.39 -0.02 1.50 16
28 H 0.05 2.19 5.64 -2.39 -0.01 2.17 16
29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
30 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16
31 H 0.04 2.05 3.22 -2.39 -0.01 2.04 16
32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16
33 H 0.40 14.18 6.66 -92.71 -0.62 13.56 16
34 H 0.19 4.02 6.49 -2.91 -0.02 4.00 16
35 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16
36 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16
37 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16
38 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16
39 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16
40 H 0.34 9.56 8.90 -92.71 -0.82 8.73 16
Total: -1.00 -79.48 326.36 0.48 -79.00
By element:
Atomic # 1 Polarization: 26.21 SS G_CDS: -1.10 Total: 25.11 kcal
Atomic # 6 Polarization: 14.31 SS G_CDS: 6.76 Total: 21.07 kcal
Atomic # 7 Polarization: -135.52 SS G_CDS: -5.42 Total: -140.94 kcal
Atomic # 8 Polarization: -30.87 SS G_CDS: -1.44 Total: -32.31 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.07 kcal
Total: -79.48 0.48 -79.00 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356080826.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.304 kcal
(2) G-P(sol) polarization free energy of solvation -79.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds