Wall clock time and date at job start Tue Mar 31 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47542 * 2 1 4 4 N 1.46505 * 109.46934 * 120.00028 * 2 1 3 5 5 C 1.36219 * 125.85882 * 324.97315 * 4 2 1 6 6 C 1.35299 * 108.88188 * 180.02562 * 5 4 2 7 7 C 1.40853 * 108.22228 * 359.97438 * 6 5 4 8 8 N 1.33386 * 126.35135 * 179.97438 * 7 6 5 9 9 C 1.33169 * 120.00115 * 0.02562 * 8 7 6 10 10 O 1.21753 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.49241 * 119.99992 * 180.02562 * 9 8 7 12 12 O 1.21380 * 120.00115 * 359.97438 * 11 9 8 13 13 N 1.34773 * 119.99605 * 179.72372 * 11 9 8 14 14 C 1.46503 * 119.99835 * 179.97438 * 13 11 9 15 15 H 1.09006 * 109.47107 * 35.00402 * 14 13 11 16 16 C 1.52994 * 109.47276 * 275.00319 * 14 13 11 17 17 C 1.50701 * 109.47317 * 154.99893 * 14 13 11 18 18 H 1.08001 * 119.99691 * 5.46271 * 17 14 13 19 19 C 1.37878 * 119.99855 * 185.46233 * 17 14 13 20 20 N 1.31508 * 120.00326 * 9.55953 * 19 17 14 21 21 Si 1.86802 * 119.99670 * 189.55782 * 19 17 14 22 22 H 1.48503 * 109.46797 * 84.99346 * 21 19 17 23 23 H 1.48500 * 109.47075 * 204.99401 * 21 19 17 24 24 H 1.48496 * 109.47221 * 324.99671 * 21 19 17 25 25 N 1.37282 * 107.29526 * 0.22630 * 7 6 5 26 26 H 0.97001 * 126.33467 * 179.74981 * 25 7 6 27 27 H 1.09004 * 109.46464 * 60.00076 * 1 2 3 28 28 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47292 * 300.00427 * 1 2 3 30 30 H 1.08995 * 109.47292 * 239.99572 * 2 1 3 31 31 H 1.08995 * 109.47177 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47137 * 299.99895 * 3 2 1 33 33 H 1.09002 * 109.46863 * 59.99590 * 3 2 1 34 34 H 1.08004 * 125.56285 * 0.02562 * 5 4 2 35 35 H 1.08000 * 125.88930 * 180.02562 * 6 5 4 36 36 H 0.96991 * 120.00597 * 359.97438 * 13 11 9 37 37 H 1.09005 * 109.47082 * 303.67659 * 16 14 13 38 38 H 1.09000 * 109.47512 * 63.67588 * 16 14 13 39 39 H 1.09000 * 109.47557 * 183.67658 * 16 14 13 40 40 H 0.97002 * 120.00300 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.4319 -0.6687 2.4255 6 6 2.1686 -1.4207 3.2755 7 6 3.2659 -1.9431 2.5635 8 7 4.2223 -2.7334 3.0532 9 6 4.1925 -3.1002 4.3331 10 8 3.2925 -2.7137 5.0563 11 6 5.2630 -3.9840 4.8811 12 8 6.1605 -4.3689 4.1602 13 7 5.2358 -4.3506 6.1778 14 6 6.2863 -5.2186 6.7157 15 1 7.2349 -4.9828 6.2333 16 6 5.9269 -6.6811 6.4465 17 6 6.4095 -4.9968 8.2012 18 1 5.7122 -4.3476 8.7099 19 6 7.4125 -5.6226 8.9108 20 7 8.3706 -6.2588 8.2732 21 14 7.4102 -5.5667 10.7780 22 1 6.5514 -6.6577 11.3047 23 1 8.7967 -5.7417 11.2801 24 1 6.8806 -4.2562 11.2333 25 7 3.1715 -1.4834 1.2734 26 1 3.7881 -1.6732 0.5490 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.5266 -0.1377 2.6803 35 1 1.9520 -1.5917 4.3197 36 1 4.5209 -4.0398 6.7548 37 1 4.9478 -6.8992 6.8732 38 1 5.9019 -6.8572 5.3711 39 1 6.6748 -7.3292 6.9034 40 1 9.0764 -6.6988 8.7724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361927723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:53 Heat of formation + Delta-G solvation = 42.355317 kcal Electronic energy + Delta-G solvation = -22893.191768 eV Core-core repulsion = 19325.594739 eV Total energy + Delta-G solvation = -3567.597029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79436 -39.38005 -37.62783 -36.29987 -34.62656 -33.20881 -32.09299 -31.85313 -29.30596 -28.86989 -28.09394 -25.12584 -24.77988 -23.02489 -21.96106 -21.55006 -20.08733 -18.93853 -18.04090 -17.00168 -16.36404 -15.99720 -15.84562 -15.45870 -15.05514 -14.92166 -14.57054 -14.39661 -13.90533 -13.73995 -13.56005 -13.15025 -13.02328 -12.84643 -12.70924 -12.21047 -12.15971 -11.95873 -11.64270 -10.92748 -10.87812 -10.73925 -10.69288 -10.57223 -10.20519 -10.12343 -9.81631 -9.06838 -8.96869 -8.39272 -8.34832 -7.74983 -7.64859 -6.01160 -4.05533 0.78242 0.96805 2.15495 3.17610 3.29878 3.36135 3.41582 3.44710 3.80756 3.98921 4.05059 4.18964 4.24770 4.47811 4.60639 4.72205 4.78344 4.90744 4.96337 5.11399 5.17745 5.32308 5.33765 5.38653 5.50170 5.87384 5.96966 6.53387 6.82886 6.91615 7.06067 7.16147 7.22647 7.57703 7.63487 7.73906 7.82117 7.99892 8.20461 8.67375 8.91249 9.05315 9.32837 9.59859 11.07544 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.002648 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.704510 B =10569.616317 C =10852.115188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.173 4.173 4 N -0.383 5.383 5 C 0.145 3.855 6 C -0.298 4.298 7 C 0.479 3.521 8 N -0.644 5.644 9 C 0.495 3.505 10 O -0.554 6.554 11 C 0.508 3.492 12 O -0.522 6.522 13 N -0.686 5.686 14 C 0.261 3.739 15 H 0.058 0.942 16 C -0.142 4.142 17 C -0.532 4.532 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.274 1.274 25 N -0.476 5.476 26 H 0.449 0.551 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.397 0.603 37 H 0.030 0.970 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 16.391 -19.498 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.231 4.231 4 N -0.175 5.175 5 C 0.008 3.992 6 C -0.330 4.330 7 C 0.225 3.775 8 N -0.403 5.403 9 C 0.278 3.722 10 O -0.433 6.433 11 C 0.288 3.712 12 O -0.398 6.398 13 N -0.337 5.337 14 C 0.160 3.840 15 H 0.075 0.925 16 C -0.200 4.200 17 C -0.571 4.571 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.199 1.199 25 N -0.202 5.202 26 H 0.297 0.703 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.209 0.791 35 H 0.210 0.790 36 H 0.231 0.769 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.202 15.943 -20.262 31.560 hybrid contribution -0.431 0.258 1.249 1.347 sum -18.632 16.201 -19.012 31.163 Atomic orbital electron populations 1.22215 0.91796 1.04023 1.04236 1.21522 0.95598 0.92814 0.84563 1.22366 1.02550 0.94445 1.03738 1.46887 1.16061 1.43829 1.10714 1.22789 0.97471 0.96557 0.82374 1.22878 0.98587 1.07691 1.03794 1.19369 0.89621 0.86180 0.82283 1.68992 1.28175 1.26009 1.17131 1.21198 0.85286 0.81080 0.84662 1.90563 1.36228 1.53633 1.62921 1.19503 0.85996 0.82137 0.83591 1.90663 1.35758 1.55036 1.58337 1.46390 1.29445 1.49277 1.08549 1.18836 0.86237 0.85444 0.93529 0.92462 1.22016 1.00253 1.00065 0.97704 1.21201 1.14610 1.29402 0.91881 0.91885 1.24889 0.94591 0.95320 0.98808 1.69993 1.11607 1.34805 1.35572 0.86501 0.77126 0.78552 0.85162 1.20445 1.21255 1.19872 1.44351 1.18765 1.45263 1.11835 0.70288 0.89452 0.90952 0.90951 0.88196 0.91576 0.90065 0.91211 0.79115 0.79000 0.76910 0.95117 0.96017 0.90760 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.14 8.84 37.16 0.33 0.19 16 2 C 0.16 0.38 3.93 -67.93 -0.27 0.11 16 3 C -0.17 -0.36 9.52 37.16 0.35 0.00 16 4 N -0.38 -2.40 3.56 -54.54 -0.19 -2.60 16 5 C 0.15 1.03 10.57 -16.65 -0.18 0.85 16 6 C -0.30 -3.71 9.52 -39.64 -0.38 -4.09 16 7 C 0.48 7.10 8.07 -155.17 -1.25 5.84 16 8 N -0.64 -12.80 10.33 -11.99 -0.12 -12.92 16 9 C 0.50 11.00 7.77 -12.40 -0.10 10.91 16 10 O -0.55 -11.83 13.39 5.14 0.07 -11.76 16 11 C 0.51 12.82 7.85 -11.69 -0.09 12.73 16 12 O -0.52 -14.62 16.57 5.47 0.09 -14.53 16 13 N -0.69 -17.25 5.06 -55.43 -0.28 -17.53 16 14 C 0.26 7.33 2.43 -69.08 -0.17 7.16 16 15 H 0.06 1.82 7.52 -51.93 -0.39 1.43 16 16 C -0.14 -3.77 9.36 37.15 0.35 -3.42 16 17 C -0.53 -15.26 8.66 -34.44 -0.30 -15.56 16 18 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 19 C 0.07 1.92 5.17 -17.82 -0.09 1.83 16 20 N -0.88 -26.31 12.16 55.43 0.67 -25.64 16 21 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 N -0.48 -4.56 7.37 31.31 0.23 -4.33 16 26 H 0.45 3.36 8.96 -182.56 -1.64 1.72 16 27 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.02 7.13 -51.93 -0.37 -0.35 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.19 0.50 7.23 -52.48 -0.38 0.12 16 35 H 0.19 2.79 5.77 -52.49 -0.30 2.49 16 36 H 0.40 9.27 7.99 -40.82 -0.33 8.94 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 2.07 6.83 -51.93 -0.35 1.72 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -38.77 343.59 -7.85 -46.62 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.68 Total: 4.24 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: -1.79 Total: 16.55 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.31 Total: -63.02 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.16 Total: -26.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.77 -7.85 -46.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361927723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.972 kcal (2) G-P(sol) polarization free energy of solvation -38.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds