Wall clock time and date at job start Tue Mar 31 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46800 * 2 1 4 4 C 1.53005 * 109.47299 * 240.00335 * 2 1 3 5 5 N 1.46505 * 109.47530 * 119.99768 * 2 1 3 6 6 N 1.40067 * 126.09352 * 0.02911 * 5 2 1 7 7 C 1.30857 * 108.41976 * 179.97438 * 6 5 2 8 8 C 1.39696 * 108.45734 * 0.26599 * 7 6 5 9 9 C 1.35848 * 126.09967 * 179.97438 * 5 2 1 10 10 N 1.39205 * 126.27129 * 0.04413 * 9 5 2 11 11 C 1.34777 * 120.00062 * 179.97438 * 10 9 5 12 12 O 1.21388 * 119.99917 * 359.97438 * 11 10 9 13 13 C 1.49305 * 120.00015 * 180.02562 * 11 10 9 14 14 O 1.21366 * 120.00126 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00015 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00267 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47405 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00324 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47311 * 60.00325 * 21 19 17 23 23 H 1.48497 * 109.46932 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47135 * 300.00007 * 21 19 17 25 25 H 1.09001 * 109.46778 * 299.99658 * 1 2 3 26 26 H 1.08996 * 109.47437 * 59.99919 * 1 2 3 27 27 H 1.09006 * 109.46699 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46697 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46740 * 299.99947 * 3 2 1 30 30 H 1.09001 * 109.47176 * 60.00586 * 3 2 1 31 31 H 1.09000 * 109.46303 * 299.99892 * 4 2 1 32 32 H 1.08996 * 109.47083 * 59.99530 * 4 2 1 33 33 H 1.08997 * 109.47092 * 179.97438 * 4 2 1 34 34 H 1.08002 * 125.76843 * 179.97438 * 7 6 5 35 35 H 1.07996 * 126.06894 * 179.71164 * 8 7 6 36 36 H 0.97001 * 120.00166 * 359.97438 * 10 9 5 37 37 H 0.97001 * 119.99771 * 359.97438 * 15 13 11 38 38 H 1.08996 * 109.47618 * 300.00133 * 16 15 13 39 39 H 1.09000 * 109.47006 * 60.00083 * 16 15 13 40 40 H 0.97002 * 119.99978 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 7 1.2265 -1.2687 2.1964 7 6 2.0167 -1.7904 3.0996 8 6 3.3400 -1.5610 2.7151 9 6 3.3201 -0.8853 1.5326 10 7 4.4303 -0.4652 0.8054 11 6 5.6719 -0.7274 1.2595 12 8 5.8221 -1.3295 2.3028 13 6 6.8627 -0.2763 0.4799 14 8 6.7126 0.3261 -0.5630 15 7 8.1043 -0.5390 0.9337 16 6 9.2727 -0.0969 0.1685 17 6 10.5304 -0.5120 0.8873 18 1 10.4659 -1.0516 1.8207 19 6 11.7636 -0.2029 0.3535 20 7 11.8421 0.4545 -0.7827 21 14 13.3226 -0.7181 1.2443 22 1 13.3503 -2.1968 1.3787 23 1 14.5069 -0.2699 0.4686 24 1 13.3499 -0.0979 2.5932 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.6995 -2.3067 3.9936 35 1 4.2220 -1.8676 3.2576 36 1 4.3104 0.0162 -0.0281 37 1 8.2242 -1.0207 1.7670 38 1 9.2524 -0.5525 -0.8215 39 1 9.2527 0.9884 0.0694 40 1 12.7096 0.6717 -1.1585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427847876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:56 Heat of formation + Delta-G solvation = 11.659598 kcal Electronic energy + Delta-G solvation = -23556.834048 eV Core-core repulsion = 19987.905953 eV Total energy + Delta-G solvation = -3568.928095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.78821 -40.13137 -38.14457 -37.06616 -35.35066 -34.25946 -32.44129 -30.37903 -29.33070 -27.83057 -27.81826 -27.65921 -24.95362 -22.81386 -22.38202 -21.20256 -20.06274 -19.72712 -18.20648 -17.28458 -16.55911 -16.03511 -15.97887 -15.44250 -15.31684 -15.12667 -14.54989 -14.39782 -14.21072 -13.76172 -13.54740 -13.34223 -13.15531 -12.70974 -12.59528 -12.38963 -12.16646 -12.10780 -12.01532 -11.65295 -11.57977 -11.21874 -11.12517 -11.05908 -10.93697 -10.58085 -10.35476 -9.55486 -9.26942 -9.06258 -8.88880 -8.23073 -8.15140 -6.26519 -4.34297 1.28208 1.87863 2.09479 2.68677 2.88868 3.22620 3.27303 3.29324 3.53901 3.83779 4.09685 4.27464 4.36609 4.47937 4.81154 4.90579 5.06892 5.07776 5.10436 5.26380 5.26855 5.30889 5.39213 5.43322 5.50575 5.65240 5.78186 5.81415 5.94551 6.07049 6.69688 6.81568 6.92264 6.98545 7.10728 7.29050 7.47361 7.68131 7.72962 7.81045 8.26953 8.45502 8.75536 9.32247 10.83463 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.003125 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.154901 B = 8958.825757 C = 9677.615273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.176 3.824 3 C -0.166 4.166 4 C -0.166 4.166 5 N -0.378 5.378 6 N -0.289 5.289 7 C 0.056 3.944 8 C -0.280 4.280 9 C 0.309 3.691 10 N -0.630 5.630 11 C 0.513 3.487 12 O -0.487 6.487 13 C 0.496 3.504 14 O -0.536 6.536 15 N -0.666 5.666 16 C 0.247 3.753 17 C -0.549 4.549 18 H 0.067 0.933 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.420 0.580 37 H 0.406 0.594 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.861 -1.053 1.818 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.093 3.907 3 C -0.225 4.225 4 C -0.225 4.225 5 N -0.168 5.168 6 N -0.111 5.111 7 C -0.130 4.130 8 C -0.312 4.312 9 C 0.090 3.910 10 N -0.281 5.281 11 C 0.295 3.705 12 O -0.357 6.357 13 C 0.274 3.726 14 O -0.415 6.415 15 N -0.315 5.315 16 C 0.127 3.873 17 C -0.587 4.587 18 H 0.085 0.915 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.202 0.798 35 H 0.190 0.810 36 H 0.261 0.739 37 H 0.241 0.759 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.828 -0.692 1.194 21.871 hybrid contribution 1.756 -0.331 0.568 1.875 sum -20.072 -1.022 1.762 20.175 Atomic orbital electron populations 1.21832 0.91081 1.03643 1.02858 1.20785 0.96868 0.91501 0.81538 1.22362 1.01900 0.94217 1.03996 1.22360 1.01899 1.01738 0.96480 1.49108 1.01252 1.46782 1.19646 1.77364 1.17217 1.17169 0.99309 1.23739 0.91592 0.99007 0.98689 1.21705 0.99335 1.12036 0.98097 1.18116 0.80242 0.99116 0.93557 1.42852 1.03138 1.56201 1.25914 1.20887 0.83844 0.79788 0.85966 1.90685 1.85466 1.37324 1.22270 1.19464 0.84389 0.82678 0.86085 1.90744 1.85852 1.41549 1.23313 1.46429 1.05114 1.53639 1.26286 1.19382 0.79776 0.96293 0.91862 1.21157 0.90146 1.38806 1.08579 0.91511 1.24933 0.99379 0.94557 0.94933 1.69949 1.25712 1.38319 1.18241 0.86409 0.81504 0.79119 0.79560 1.19916 1.21017 1.19910 0.91235 0.90928 0.91230 0.91970 0.89654 0.91174 0.91175 0.89653 0.91969 0.79817 0.80979 0.73947 0.75912 0.94579 0.94581 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 7.99 37.16 0.30 -0.79 16 2 C 0.18 1.66 1.06 -131.81 -0.14 1.52 16 3 C -0.17 -1.42 8.48 37.16 0.31 -1.11 16 4 C -0.17 -1.42 8.48 37.16 0.31 -1.11 16 5 N -0.38 -4.69 3.48 -47.60 -0.17 -4.86 16 6 N -0.29 -3.75 11.64 30.59 0.36 -3.39 16 7 C 0.06 0.68 12.00 -17.42 -0.21 0.47 16 8 C -0.28 -3.97 9.65 -39.77 -0.38 -4.35 16 9 C 0.31 4.34 7.02 -152.86 -1.07 3.27 16 10 N -0.63 -8.90 4.72 -11.80 -0.06 -8.95 16 11 C 0.51 8.47 7.85 -11.65 -0.09 8.38 16 12 O -0.49 -8.45 13.60 5.46 0.07 -8.38 16 13 C 0.50 9.51 7.88 -11.65 -0.09 9.42 16 14 O -0.54 -11.27 16.48 5.48 0.09 -11.18 16 15 N -0.67 -13.76 5.54 -61.96 -0.34 -14.11 16 16 C 0.25 6.18 5.43 -5.20 -0.03 6.15 16 17 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 18 H 0.07 1.66 7.60 -52.48 -0.40 1.26 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 21 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.60 5.90 -51.92 -0.31 0.29 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 5.90 -51.93 -0.31 0.29 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.17 2.59 5.83 -52.49 -0.31 2.28 16 36 H 0.42 5.38 4.43 -40.82 -0.18 5.20 16 37 H 0.41 7.73 7.79 -40.82 -0.32 7.41 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -30.48 337.26 -5.93 -36.41 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.18 Total: 9.54 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.51 Total: 8.81 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.53 Total: -55.65 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.16 Total: -19.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.48 -5.93 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427847876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.070 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds